Wall clock time and date at job start Tue Mar 31 2020 11:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46896 * 111.00294 * 2 1 4 4 C 1.50700 * 109.47272 * 294.42288 * 3 2 1 5 5 C 1.35318 * 126.04309 * 100.52625 * 4 3 2 6 6 N 1.34940 * 107.74734 * 179.87871 * 5 4 3 7 7 C 1.46507 * 126.03797 * 180.14673 * 6 5 4 8 8 N 1.40086 * 107.92690 * 0.38861 * 6 5 4 9 9 C 1.30841 * 108.20163 * 359.75879 * 8 6 5 10 10 C 1.50698 * 125.89355 * 179.97438 * 9 8 6 11 11 F 1.39903 * 109.46972 * 272.45254 * 10 9 8 12 12 F 1.39900 * 109.47457 * 32.45544 * 10 9 8 13 13 F 1.39901 * 109.46784 * 152.45871 * 10 9 8 14 14 C 1.46906 * 110.99958 * 123.95217 * 2 1 3 15 15 C 1.52999 * 109.46926 * 74.94923 * 14 2 1 16 16 C 1.50694 * 115.55083 * 56.77479 * 15 14 2 17 17 H 1.08004 * 119.99935 * 264.26200 * 16 15 14 18 18 C 1.37877 * 120.00161 * 84.26157 * 16 15 14 19 19 N 1.31512 * 119.99811 * 357.83698 * 18 16 15 20 20 Si 1.86797 * 119.99928 * 177.83020 * 18 16 15 21 21 H 1.48502 * 109.47160 * 180.02562 * 20 18 16 22 22 H 1.48494 * 109.47627 * 300.00301 * 20 18 16 23 23 H 1.48506 * 109.47272 * 60.00552 * 20 18 16 24 24 C 1.53003 * 117.49948 * 202.44299 * 15 14 2 25 25 C 1.53003 * 117.49941 * 271.10237 * 15 14 2 26 26 H 1.08996 * 109.47632 * 300.45243 * 1 2 3 27 27 H 1.09006 * 109.46795 * 60.44970 * 1 2 3 28 28 H 1.09005 * 109.47286 * 180.44718 * 1 2 3 29 29 H 1.09001 * 109.47294 * 54.41853 * 3 2 1 30 30 H 1.09002 * 109.47611 * 174.42046 * 3 2 1 31 31 H 1.08007 * 126.12253 * 0.02607 * 5 4 3 32 32 H 1.08997 * 109.47149 * 270.25972 * 7 6 5 33 33 H 1.08999 * 109.46806 * 30.26136 * 7 6 5 34 34 H 1.09000 * 109.46870 * 150.25750 * 7 6 5 35 35 H 1.09005 * 109.46653 * 314.95209 * 14 2 1 36 36 H 1.08991 * 109.47362 * 194.95033 * 14 2 1 37 37 H 0.96992 * 120.00132 * 355.86606 * 19 18 16 38 38 H 1.08995 * 117.50315 * 215.00520 * 24 15 14 39 39 H 1.09004 * 117.49544 * 0.02617 * 24 15 14 40 40 H 1.09007 * 117.49837 * 359.97438 * 25 15 14 41 41 H 1.08996 * 117.50027 * 144.97774 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6271 2.0509 -1.2937 5 6 0.6113 2.9271 -1.4717 6 7 0.6178 3.3066 -2.7666 7 6 -0.3118 4.2501 -3.3928 8 7 1.6667 2.6350 -3.4076 9 6 2.2709 1.8827 -2.5239 10 6 3.4555 0.9890 -2.7865 11 9 3.0074 -0.2663 -3.2116 12 9 4.2584 1.5588 -3.7804 13 9 4.2003 0.8447 -1.6110 14 6 1.9954 -0.7660 1.1377 15 6 1.8285 -2.2624 0.8659 16 6 2.4710 -2.7688 -0.3996 17 1 1.8852 -2.8640 -1.3020 18 6 3.8067 -3.1106 -0.4056 19 7 4.5302 -2.9546 0.6815 20 14 4.5886 -3.7955 -1.9577 21 1 6.0235 -4.0821 -1.7042 22 1 3.8957 -5.0491 -2.3494 23 1 4.4682 -2.8003 -3.0533 24 6 1.8094 -3.2019 2.0734 25 6 0.5171 -2.9179 1.3037 26 1 -0.3634 0.5208 0.8858 27 1 -0.3633 0.5069 -0.8941 28 1 -0.3634 -1.0277 0.0080 29 1 1.5675 1.9249 0.8358 30 1 3.0806 1.3441 0.0999 31 1 -0.0792 3.2641 -0.7127 32 1 -1.1770 3.7083 -3.7748 33 1 -0.6385 4.9824 -2.6545 34 1 0.1886 4.7615 -4.2151 35 1 1.4477 -0.4974 2.0410 36 1 3.0525 -0.5368 1.2720 37 1 4.1402 -2.5437 1.4688 38 1 2.2616 -4.1862 1.9524 39 1 1.9154 -2.7538 3.0614 40 1 -0.2265 -2.2831 1.7857 41 1 0.1190 -3.7152 0.6761 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602801845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:44 Heat of formation + Delta-G solvation = -31.165048 kcal Electronic energy + Delta-G solvation = -28635.606879 eV Core-core repulsion = 24331.938657 eV Total energy + Delta-G solvation = -4303.668222 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.56203 -47.15338 -46.97278 -41.49844 -37.75302 -35.45974 -33.68271 -31.63602 -30.88539 -28.55165 -27.00601 -26.54973 -24.75398 -24.28468 -21.81938 -21.21473 -21.08061 -20.26612 -19.11459 -17.92229 -17.68442 -17.46623 -16.46488 -16.14526 -15.78408 -14.77375 -14.70419 -14.42223 -14.01767 -13.87467 -13.65807 -13.53291 -13.44562 -13.38675 -13.16110 -13.13718 -13.07893 -12.89765 -12.53410 -12.32698 -12.00228 -11.94995 -11.32299 -11.12785 -10.86074 -10.82140 -10.67801 -10.55995 -10.29954 -9.92498 -9.71794 -9.34237 -8.61826 -8.33575 -8.28946 -8.04721 -7.44337 -6.07586 -3.77122 1.53089 2.03179 2.33412 3.15080 3.59806 3.65755 3.80680 4.00819 4.30259 4.56835 4.63724 4.74094 4.76181 4.84298 4.94729 5.08747 5.16104 5.28833 5.35082 5.58119 5.60998 5.77815 5.85849 5.98170 6.02303 6.16710 6.20224 6.25755 6.38318 6.46291 6.50827 6.64920 6.74217 6.80008 6.98011 7.30030 7.37161 7.41248 7.81525 7.94178 8.53597 8.71761 9.15141 9.92885 11.31657 Molecular weight = 317.14amu Principal moments of inertia in cm(-1) A = 0.013874 B = 0.006216 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.730625 B = 4503.182511 C = 5854.622246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.506 5.506 3 C 0.116 3.884 4 C -0.170 4.170 5 C 0.056 3.944 6 N -0.363 5.363 7 C 0.101 3.899 8 N -0.248 5.248 9 C 0.011 3.989 10 C 0.556 3.444 11 F -0.152 7.152 12 F -0.182 7.182 13 F -0.155 7.155 14 C 0.101 3.899 15 C 0.037 3.963 16 C -0.534 4.534 17 H 0.050 0.950 18 C 0.029 3.971 19 N -0.916 5.916 20 Si 1.052 2.948 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.283 1.283 24 C -0.181 4.181 25 C -0.201 4.201 26 H 0.008 0.992 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.033 0.967 30 H 0.092 0.908 31 H 0.181 0.819 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.003 0.997 36 H 0.069 0.931 37 H 0.270 0.730 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.178 15.443 -3.717 18.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.229 5.229 3 C -0.013 4.013 4 C -0.182 4.182 5 C -0.090 4.090 6 N -0.146 5.146 7 C -0.040 4.040 8 N -0.072 5.072 9 C -0.156 4.156 10 C 0.500 3.500 11 F -0.134 7.134 12 F -0.163 7.163 13 F -0.136 7.136 14 C -0.027 4.027 15 C 0.036 3.964 16 C -0.572 4.572 17 H 0.068 0.932 18 C -0.175 4.175 19 N -0.552 5.552 20 Si 0.882 3.118 21 H -0.211 1.211 22 H -0.219 1.219 23 H -0.209 1.209 24 C -0.220 4.220 25 C -0.238 4.238 26 H 0.026 0.974 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.111 0.889 31 H 0.198 0.802 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.021 0.979 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.698 15.068 -6.054 17.971 hybrid contribution -1.807 0.716 2.127 2.882 sum -9.505 15.785 -3.927 18.839 Atomic orbital electron populations 1.22359 0.88739 1.02277 0.98246 1.61673 1.06434 1.09869 1.44920 1.20623 1.01430 0.88985 0.90248 1.19801 0.98879 1.03364 0.96166 1.22350 1.00113 0.99196 0.87294 1.48415 1.24466 1.34707 1.07019 1.21946 0.91317 0.90916 0.99771 1.77302 1.00167 1.10044 1.19676 1.21999 0.99069 1.00408 0.94157 1.16826 0.80405 0.78460 0.74335 1.93323 1.88872 1.41525 1.89631 1.93179 1.75569 1.84891 1.62661 1.93228 1.77455 1.95720 1.47179 1.21766 0.98523 0.94891 0.87492 1.19074 0.94414 0.88252 0.94647 1.21035 0.96365 1.45692 0.94101 0.93217 1.25500 0.93994 0.95693 1.02343 1.70739 1.39469 1.41647 1.03331 0.83792 0.76081 0.76395 0.75561 1.21121 1.21852 1.20946 1.22774 1.01332 1.02431 0.95426 1.22897 0.91319 1.04373 1.05220 0.97408 0.92974 0.90647 0.94867 0.88949 0.80210 0.90299 0.89083 0.88981 0.97854 0.91250 0.91866 0.89787 0.92005 0.92064 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.12 60.06 0.55 1.10 16 2 N -0.51 -9.95 4.43 -244.37 -1.08 -11.03 16 3 C 0.12 1.94 4.85 -4.98 -0.02 1.92 16 4 C -0.17 -2.66 4.63 -105.05 -0.49 -3.14 16 5 C 0.06 0.66 10.76 -17.23 -0.19 0.48 16 6 N -0.36 -4.32 4.01 -68.16 -0.27 -4.59 16 7 C 0.10 0.64 11.47 59.85 0.69 1.33 16 8 N -0.25 -3.98 12.53 33.67 0.42 -3.56 16 9 C 0.01 0.19 6.56 -82.41 -0.54 -0.35 16 10 C 0.56 10.91 3.51 36.00 0.13 11.03 16 11 F -0.15 -3.40 17.30 2.25 0.04 -3.36 16 12 F -0.18 -3.34 17.27 2.25 0.04 -3.31 16 13 F -0.15 -3.20 14.75 2.25 0.03 -3.17 16 14 C 0.10 2.18 4.82 -3.82 -0.02 2.17 16 15 C 0.04 0.90 0.82 -155.66 -0.13 0.77 16 16 C -0.53 -14.81 8.57 -34.44 -0.30 -15.10 16 17 H 0.05 1.45 7.81 -52.48 -0.41 1.04 16 18 C 0.03 0.82 5.41 -17.82 -0.10 0.73 16 19 N -0.92 -27.24 13.49 55.43 0.75 -26.50 16 20 Si 1.05 26.44 29.90 -169.99 -5.08 21.36 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 24 C -0.18 -4.20 8.68 -26.69 -0.23 -4.44 16 25 C -0.20 -4.35 8.41 -26.69 -0.22 -4.58 16 26 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 27 H 0.05 0.83 6.80 -51.93 -0.35 0.48 16 28 H 0.07 1.41 5.91 -51.93 -0.31 1.10 16 29 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 30 H 0.09 1.68 5.94 -51.93 -0.31 1.37 16 31 H 0.18 1.41 8.06 -52.48 -0.42 0.99 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.00 0.07 7.97 -51.93 -0.41 -0.35 16 36 H 0.07 1.64 7.40 -51.93 -0.38 1.25 16 37 H 0.27 7.92 6.17 -40.82 -0.25 7.66 16 38 H 0.08 2.11 8.14 -51.93 -0.42 1.69 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.19 7.83 -51.93 -0.41 0.78 16 41 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 351.62 15.07 5.30 5.30 Total: -1.00 -32.85 351.62 -6.16 -39.02 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -5.43 Total: -2.06 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -0.87 Total: -8.10 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -0.19 Total: -45.68 kcal Atomic # 9 Polarization: -9.94 SS G_CDS: 0.11 Total: -9.83 kcal Atomic # 14 Polarization: 26.44 SS G_CDS: -5.08 Total: 21.36 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.85 -6.16 -39.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602801845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.852 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds