Wall clock time and date at job start Tue Mar 31 2020 11:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46896 * 111.00294 * 2 1 4 4 C 1.50700 * 109.47272 * 294.42288 * 3 2 1 5 5 C 1.35318 * 126.04309 * 100.52625 * 4 3 2 6 6 N 1.34940 * 107.74734 * 179.87871 * 5 4 3 7 7 C 1.46507 * 126.03797 * 180.14673 * 6 5 4 8 8 N 1.40086 * 107.92690 * 0.38861 * 6 5 4 9 9 C 1.30841 * 108.20163 * 359.75879 * 8 6 5 10 10 C 1.50698 * 125.89355 * 179.97438 * 9 8 6 11 11 F 1.39903 * 109.46972 * 272.45254 * 10 9 8 12 12 F 1.39900 * 109.47457 * 32.45544 * 10 9 8 13 13 F 1.39901 * 109.46784 * 152.45871 * 10 9 8 14 14 C 1.46906 * 110.99958 * 123.95217 * 2 1 3 15 15 C 1.52999 * 109.46926 * 74.94923 * 14 2 1 16 16 C 1.50694 * 115.55083 * 56.77479 * 15 14 2 17 17 H 1.08004 * 119.99935 * 264.26200 * 16 15 14 18 18 C 1.37877 * 120.00161 * 84.26157 * 16 15 14 19 19 N 1.31512 * 119.99811 * 357.83698 * 18 16 15 20 20 Si 1.86797 * 119.99928 * 177.83020 * 18 16 15 21 21 H 1.48502 * 109.47160 * 180.02562 * 20 18 16 22 22 H 1.48494 * 109.47627 * 300.00301 * 20 18 16 23 23 H 1.48506 * 109.47272 * 60.00552 * 20 18 16 24 24 C 1.53003 * 117.49948 * 202.44299 * 15 14 2 25 25 C 1.53003 * 117.49941 * 271.10237 * 15 14 2 26 26 H 1.08996 * 109.47632 * 300.45243 * 1 2 3 27 27 H 1.09006 * 109.46795 * 60.44970 * 1 2 3 28 28 H 1.09005 * 109.47286 * 180.44718 * 1 2 3 29 29 H 1.09001 * 109.47294 * 54.41853 * 3 2 1 30 30 H 1.09002 * 109.47611 * 174.42046 * 3 2 1 31 31 H 1.08007 * 126.12253 * 0.02607 * 5 4 3 32 32 H 1.08997 * 109.47149 * 270.25972 * 7 6 5 33 33 H 1.08999 * 109.46806 * 30.26136 * 7 6 5 34 34 H 1.09000 * 109.46870 * 150.25750 * 7 6 5 35 35 H 1.09005 * 109.46653 * 314.95209 * 14 2 1 36 36 H 1.08991 * 109.47362 * 194.95033 * 14 2 1 37 37 H 0.96992 * 120.00132 * 355.86606 * 19 18 16 38 38 H 1.08995 * 117.50315 * 215.00520 * 24 15 14 39 39 H 1.09004 * 117.49544 * 0.02617 * 24 15 14 40 40 H 1.09007 * 117.49837 * 359.97438 * 25 15 14 41 41 H 1.08996 * 117.50027 * 144.97774 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6271 2.0509 -1.2937 5 6 0.6113 2.9271 -1.4717 6 7 0.6178 3.3066 -2.7666 7 6 -0.3118 4.2501 -3.3928 8 7 1.6667 2.6350 -3.4076 9 6 2.2709 1.8827 -2.5239 10 6 3.4555 0.9890 -2.7865 11 9 3.0074 -0.2663 -3.2116 12 9 4.2584 1.5588 -3.7804 13 9 4.2003 0.8447 -1.6110 14 6 1.9954 -0.7660 1.1377 15 6 1.8285 -2.2624 0.8659 16 6 2.4710 -2.7688 -0.3996 17 1 1.8852 -2.8640 -1.3020 18 6 3.8067 -3.1106 -0.4056 19 7 4.5302 -2.9546 0.6815 20 14 4.5886 -3.7955 -1.9577 21 1 6.0235 -4.0821 -1.7042 22 1 3.8957 -5.0491 -2.3494 23 1 4.4682 -2.8003 -3.0533 24 6 1.8094 -3.2019 2.0734 25 6 0.5171 -2.9179 1.3037 26 1 -0.3634 0.5208 0.8858 27 1 -0.3633 0.5069 -0.8941 28 1 -0.3634 -1.0277 0.0080 29 1 1.5675 1.9249 0.8358 30 1 3.0806 1.3441 0.0999 31 1 -0.0792 3.2641 -0.7127 32 1 -1.1770 3.7083 -3.7748 33 1 -0.6385 4.9824 -2.6545 34 1 0.1886 4.7615 -4.2151 35 1 1.4477 -0.4974 2.0410 36 1 3.0525 -0.5368 1.2720 37 1 4.1402 -2.5437 1.4688 38 1 2.2616 -4.1862 1.9524 39 1 1.9154 -2.7538 3.0614 40 1 -0.2265 -2.2831 1.7857 41 1 0.1190 -3.7152 0.6761 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602801845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:44 Heat of formation + Delta-G solvation = -52.193330 kcal Electronic energy + Delta-G solvation = -28636.518734 eV Core-core repulsion = 24331.938657 eV Total energy + Delta-G solvation = -4304.580076 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.12440 -48.69172 -48.60858 -42.54313 -39.41536 -37.01110 -34.66248 -33.76684 -32.05278 -29.51667 -28.48112 -27.92483 -26.75266 -25.55847 -23.18634 -22.98120 -22.22916 -21.50367 -21.06624 -19.49543 -19.19821 -18.69738 -18.34984 -17.22680 -16.81620 -16.21026 -15.97945 -15.96419 -15.61809 -15.52949 -15.43761 -15.08086 -14.98551 -14.79349 -14.75240 -14.55709 -14.30235 -14.19538 -13.84155 -13.61649 -13.41953 -13.26443 -12.87159 -12.66825 -12.57637 -12.41680 -12.35640 -12.09326 -11.95704 -11.91872 -11.15903 -10.70795 -10.43272 -10.24855 -10.06617 -9.65279 -8.84545 -8.32605 -6.00366 0.47854 1.04411 1.20453 1.52314 1.61249 1.77147 1.89082 2.64950 2.71419 2.99068 3.16917 3.40201 3.42067 3.55807 3.73493 3.82350 4.12632 4.25688 4.38381 4.41623 4.44664 4.49347 4.57013 4.59759 4.63404 4.71087 4.75443 4.81651 4.89299 4.93291 5.01954 5.08297 5.14607 5.21213 5.53919 5.64130 5.91186 6.23480 6.30495 6.43909 6.46829 6.56071 6.96444 7.73005 9.08331 Molecular weight = 317.14amu Principal moments of inertia in cm(-1) A = 0.013874 B = 0.006216 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.730625 B = 4503.182511 C = 5854.622246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.535 5.535 3 C 0.123 3.877 4 C -0.199 4.199 5 C 0.089 3.911 6 N -0.347 5.347 7 C 0.088 3.912 8 N -0.277 5.277 9 C -0.013 4.013 10 C 0.549 3.451 11 F -0.176 7.176 12 F -0.180 7.180 13 F -0.168 7.168 14 C 0.117 3.883 15 C 0.009 3.991 16 C -0.530 4.530 17 H 0.027 0.973 18 C -0.013 4.013 19 N -0.941 5.941 20 Si 1.080 2.920 21 H -0.286 1.286 22 H -0.275 1.275 23 H -0.283 1.283 24 C -0.184 4.184 25 C -0.173 4.173 26 H 0.037 0.963 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.232 0.768 32 H 0.094 0.906 33 H 0.132 0.868 34 H 0.095 0.905 35 H 0.025 0.975 36 H 0.037 0.963 37 H 0.265 0.735 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.232 17.879 -3.208 21.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.258 5.258 3 C -0.006 4.006 4 C -0.211 4.211 5 C -0.059 4.059 6 N -0.130 5.130 7 C -0.051 4.051 8 N -0.103 5.103 9 C -0.178 4.178 10 C 0.492 3.508 11 F -0.158 7.158 12 F -0.162 7.162 13 F -0.149 7.149 14 C -0.011 4.011 15 C 0.008 3.992 16 C -0.569 4.569 17 H 0.045 0.955 18 C -0.212 4.212 19 N -0.579 5.579 20 Si 0.906 3.094 21 H -0.211 1.211 22 H -0.201 1.201 23 H -0.209 1.209 24 C -0.222 4.222 25 C -0.210 4.210 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.248 0.752 32 H 0.112 0.888 33 H 0.150 0.850 34 H 0.114 0.886 35 H 0.043 0.957 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.773 17.513 -5.571 21.302 hybrid contribution -0.970 0.061 1.899 2.133 sum -11.743 17.573 -3.673 21.453 Atomic orbital electron populations 1.22292 0.86945 1.01586 1.00102 1.61532 1.08223 1.11768 1.44294 1.20484 0.99957 0.87915 0.92204 1.19814 1.00803 1.05542 0.94976 1.22971 0.98620 0.96459 0.87823 1.48905 1.23235 1.33677 1.07221 1.22496 0.90523 0.90842 1.01203 1.77225 1.01889 1.10875 1.20349 1.21688 0.99072 1.01366 0.95672 1.17197 0.81489 0.78253 0.73826 1.93258 1.89157 1.43470 1.89898 1.93163 1.75775 1.84646 1.62581 1.93195 1.78024 1.95825 1.47862 1.21406 0.97153 0.93300 0.89264 1.19157 0.96389 0.90036 0.93618 1.21176 0.96102 1.44734 0.94846 0.95482 1.26351 0.94970 0.96232 1.03633 1.70811 1.39779 1.43514 1.03785 0.83418 0.75693 0.76666 0.73635 1.21133 1.20120 1.20940 1.22680 1.02466 1.00924 0.96178 1.22859 0.90834 1.03562 1.03716 0.94476 0.91870 0.92657 0.91708 0.91733 0.75175 0.88764 0.84972 0.88641 0.95658 0.94412 0.92494 0.92620 0.90038 0.88760 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.20 9.12 127.69 1.16 2.36 16 2 N -0.53 -20.40 4.43 -927.04 -4.10 -24.50 16 3 C 0.12 3.93 4.85 85.56 0.41 4.34 16 4 C -0.20 -5.82 4.63 -20.14 -0.09 -5.91 16 5 C 0.09 1.69 10.76 83.54 0.90 2.59 16 6 N -0.35 -6.97 4.01 -369.55 -1.48 -8.45 16 7 C 0.09 0.70 11.47 127.77 1.47 2.16 16 8 N -0.28 -8.55 12.53 -47.39 -0.59 -9.14 16 9 C -0.01 -0.47 6.56 43.10 0.28 -0.18 16 10 C 0.55 22.40 3.51 71.24 0.25 22.65 16 11 F -0.18 -8.26 17.30 44.97 0.78 -7.48 16 12 F -0.18 -6.93 17.27 44.97 0.78 -6.15 16 13 F -0.17 -7.35 14.75 44.97 0.66 -6.68 16 14 C 0.12 4.99 4.82 86.30 0.42 5.41 16 15 C 0.01 0.43 0.82 -52.93 -0.04 0.38 16 16 C -0.53 -30.14 8.57 25.60 0.22 -29.92 16 17 H 0.03 1.62 7.81 -2.91 -0.02 1.60 16 18 C -0.01 -0.74 5.41 84.65 0.46 -0.28 16 19 N -0.94 -57.71 13.49 21.45 0.29 -57.42 16 20 Si 1.08 54.87 29.90 68.60 2.05 56.92 16 21 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.28 -14.26 7.11 99.48 0.71 -13.55 16 24 C -0.18 -8.48 8.68 30.62 0.27 -8.22 16 25 C -0.17 -7.21 8.41 30.62 0.26 -6.95 16 26 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 1.79 6.80 -2.38 -0.02 1.78 16 28 H 0.05 1.92 5.91 -2.38 -0.01 1.91 16 29 H 0.06 1.63 8.12 -2.39 -0.02 1.61 16 30 H 0.06 2.40 5.94 -2.39 -0.01 2.39 16 31 H 0.23 1.92 8.06 -2.91 -0.02 1.89 16 32 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.03 0.96 7.97 -2.38 -0.02 0.94 16 36 H 0.04 1.82 7.40 -2.39 -0.02 1.80 16 37 H 0.26 16.02 6.17 -92.71 -0.57 15.45 16 38 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.08 3.39 8.14 -2.38 -0.02 3.37 16 40 H 0.09 3.32 7.83 -2.38 -0.02 3.30 16 41 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -75.70 351.62 5.58 -70.12 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: 1.25 Total: 4.35 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 5.96 Total: -11.56 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -5.89 Total: -99.52 kcal Atomic # 9 Polarization: -22.53 SS G_CDS: 2.22 Total: -20.32 kcal Atomic # 14 Polarization: 54.87 SS G_CDS: 2.05 Total: 56.92 kcal Total: -75.70 5.58 -70.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602801845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.928 kcal (2) G-P(sol) polarization free energy of solvation -75.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds