Wall clock time and date at job start Tue Mar 31 2020 11:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35987 * 117.00257 * 2 1 4 4 C 1.38694 * 120.00297 * 180.02562 * 3 2 1 5 5 C 1.38133 * 120.00142 * 180.02562 * 4 3 2 6 6 C 1.38690 * 119.99721 * 359.97438 * 5 4 3 7 7 O 1.35991 * 119.99568 * 179.97438 * 6 5 4 8 8 C 1.42908 * 116.99760 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47054 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47181 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.47215 * 180.02562 * 10 9 8 12 12 C 1.35309 * 125.87027 * 124.97307 * 11 10 9 13 13 C 1.35353 * 106.17498 * 179.97438 * 12 11 10 14 14 C 1.50706 * 126.75076 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46793 * 124.99895 * 14 13 12 16 16 H 1.08001 * 119.99975 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99507 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00130 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99689 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47236 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46973 * 119.99908 * 19 17 15 22 22 H 1.48501 * 109.47442 * 240.00147 * 19 17 15 23 23 N 1.33775 * 106.49785 * 359.97438 * 13 12 11 24 24 N 1.28637 * 108.88137 * 0.02562 * 23 13 12 25 25 C 1.38692 * 120.00540 * 0.25337 * 6 5 4 26 26 C 1.38136 * 119.99526 * 359.49317 * 25 6 5 27 27 H 1.09003 * 109.47558 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47328 * 300.00224 * 1 2 3 29 29 H 1.09003 * 109.47211 * 59.99675 * 1 2 3 30 30 H 1.08004 * 120.00194 * 359.97438 * 4 3 2 31 31 H 1.08002 * 120.00188 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.46687 * 60.00077 * 8 7 6 33 33 H 1.09004 * 109.46932 * 300.00573 * 8 7 6 34 34 H 1.09001 * 109.46985 * 59.99804 * 9 8 7 35 35 H 1.09007 * 109.47030 * 300.00000 * 9 8 7 36 36 H 1.08997 * 109.46834 * 59.99681 * 10 9 8 37 37 H 1.09007 * 109.46928 * 299.99805 * 10 9 8 38 38 H 1.08002 * 126.91313 * 0.02562 * 12 11 10 39 39 H 1.08997 * 109.46870 * 244.99788 * 14 13 12 40 40 H 1.09004 * 109.46999 * 5.00398 * 14 13 12 41 41 H 0.97003 * 119.99723 * 180.02562 * 18 17 15 42 42 H 1.08000 * 120.00249 * 179.72399 * 25 6 5 43 43 H 1.08007 * 120.00032 * 180.22761 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4314 1.2842 -0.0005 5 6 4.0585 2.5150 0.0000 6 6 3.3031 3.6781 0.0005 7 8 3.9205 4.8898 0.0016 8 6 3.0806 6.0459 0.0015 9 6 3.9478 7.3063 0.0021 10 6 3.0485 8.5442 0.0027 11 7 3.8789 9.7511 0.0027 12 6 3.8102 10.7607 -0.8955 13 6 4.7477 11.6625 -0.5215 14 6 5.0662 12.9679 -1.2041 15 6 4.9622 14.0940 -0.2080 16 1 4.6928 13.8853 0.8168 17 6 5.2109 15.3907 -0.6052 18 7 5.5384 15.6448 -1.8533 19 14 5.0827 16.7865 0.6296 20 1 4.7022 16.2399 1.9568 21 1 6.3940 17.4753 0.7359 22 1 4.0506 17.7539 0.1778 23 7 5.3359 11.1673 0.5731 24 7 4.7986 10.0337 0.8577 25 6 1.9181 3.6056 0.0058 26 6 1.2910 2.3748 0.0000 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 4.0196 0.3784 -0.0005 31 1 5.1370 2.5715 0.0000 32 1 2.4507 6.0373 0.8910 33 1 2.4519 6.0382 -0.8889 34 1 4.5774 7.3146 -0.8876 35 1 4.5767 7.3142 0.8924 36 1 2.4192 8.5356 0.8926 37 1 2.4192 8.5365 -0.8874 38 1 3.1413 10.8329 -1.7404 39 1 6.0788 12.9302 -1.6056 40 1 4.3591 13.1350 -2.0166 41 1 5.7137 16.5571 -2.1325 42 1 1.3299 4.5114 0.0108 43 1 0.2124 2.3183 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603176713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:05 Heat of formation + Delta-G solvation = 43.173523 kcal Electronic energy + Delta-G solvation = -24148.711763 eV Core-core repulsion = 20390.123844 eV Total energy + Delta-G solvation = -3758.587919 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.54437 -40.82201 -39.44834 -36.97413 -35.54369 -33.39278 -31.99285 -31.56336 -31.04150 -29.68233 -27.67496 -27.47162 -26.53502 -23.79619 -23.35786 -22.42569 -21.90415 -21.17690 -20.01142 -18.85766 -18.10118 -17.13058 -16.76890 -16.59585 -16.21807 -16.12388 -15.67354 -15.24663 -14.81122 -14.59621 -14.36294 -14.16267 -13.97957 -13.73591 -13.19640 -13.09271 -12.88332 -12.50823 -12.37882 -12.25802 -12.04458 -11.90843 -11.63716 -11.38460 -11.10493 -10.99851 -10.76074 -10.72807 -10.64547 -10.08607 -9.71456 -9.51873 -9.46590 -9.29305 -8.44417 -8.15316 -8.14568 -5.99233 -3.99733 0.81391 1.04882 2.15685 2.51260 2.84378 3.02925 3.30679 3.35359 3.41365 3.45159 3.52512 4.24356 4.31273 4.34075 4.50430 4.51563 4.54199 4.61366 4.66899 4.70540 4.72055 4.85440 4.94744 4.97311 5.04222 5.07252 5.17198 5.37781 5.42419 5.51506 5.60234 5.75490 5.83574 5.85831 5.90673 6.05809 6.14283 6.28790 6.85308 7.07026 7.10948 7.15461 7.52478 7.61976 7.98820 8.37067 9.04058 9.28276 9.63246 11.11914 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.048898 B = 0.001595 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.481798 B =17545.498183 C =17693.556506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.087 3.913 4 C -0.111 4.111 5 C -0.111 4.111 6 C 0.098 3.902 7 O -0.311 6.311 8 C 0.066 3.934 9 C -0.134 4.134 10 C 0.128 3.872 11 N -0.306 5.306 12 C -0.082 4.082 13 C 0.035 3.965 14 C 0.091 3.909 15 C -0.503 4.503 16 H 0.060 0.940 17 C 0.057 3.943 18 N -0.898 5.898 19 Si 0.896 3.104 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.285 1.285 23 N -0.259 5.259 24 N -0.107 5.107 25 C -0.170 4.170 26 C -0.168 4.168 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.182 0.818 39 H 0.039 0.961 40 H 0.037 0.963 41 H 0.261 0.739 42 H 0.132 0.868 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.842 -31.476 0.717 34.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.043 3.957 4 C -0.129 4.129 5 C -0.130 4.130 6 C 0.053 3.947 7 O -0.225 6.225 8 C -0.010 4.010 9 C -0.172 4.172 10 C 0.006 3.994 11 N -0.102 5.102 12 C -0.230 4.230 13 C -0.102 4.102 14 C 0.053 3.947 15 C -0.542 4.542 16 H 0.078 0.922 17 C -0.144 4.144 18 N -0.538 5.538 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.211 1.211 23 N -0.127 5.127 24 N -0.086 5.086 25 C -0.189 4.189 26 C -0.187 4.187 27 H 0.118 0.882 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.156 0.844 31 H 0.158 0.842 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.199 0.801 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.150 0.850 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.781 -31.949 1.868 34.103 hybrid contribution -1.376 1.279 -0.410 1.923 sum -13.157 -30.671 1.458 33.405 Atomic orbital electron populations 1.23042 0.78480 1.03959 1.01282 1.86076 1.21258 1.26686 1.89288 1.18922 0.92343 0.84250 1.00232 1.20252 0.91351 0.97918 1.03405 1.20292 1.00487 0.88959 1.03247 1.18899 0.90964 0.85530 0.99292 1.86091 1.35603 1.11842 1.88934 1.22630 0.93133 0.83527 1.01740 1.21761 0.98912 0.90410 1.06113 1.21635 0.91923 0.80969 1.04920 1.47067 1.26802 1.16256 1.20068 1.23378 1.07507 0.91479 1.00627 1.23052 0.94147 0.99089 0.93928 1.17744 0.97992 0.84276 0.94730 1.21093 1.46385 0.90710 0.96023 0.92217 1.24972 0.95289 0.98824 0.95330 1.69955 1.47750 1.20161 1.15909 0.86457 0.77627 0.81929 0.81573 1.19711 1.20928 1.21113 1.75089 1.22018 1.01429 1.14121 1.78185 1.02279 1.12981 1.15152 1.21073 0.93357 0.98505 1.05919 1.21040 1.00061 0.91682 1.05889 0.88234 0.92713 0.92719 0.84409 0.84242 0.91495 0.91628 0.89740 0.88719 0.88694 0.87914 0.80080 0.94253 0.94519 0.92974 0.85046 0.85189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.53 10.50 -19.70 -0.21 -2.74 16 3 C 0.09 0.73 6.69 -39.24 -0.26 0.47 16 4 C -0.11 -0.90 9.98 -39.45 -0.39 -1.29 16 5 C -0.11 -0.95 9.98 -39.45 -0.39 -1.35 16 6 C 0.10 0.91 6.68 -39.25 -0.26 0.64 16 7 O -0.31 -3.08 10.14 -19.71 -0.20 -3.28 16 8 C 0.07 0.48 4.74 37.15 0.18 0.66 16 9 C -0.13 -1.24 5.71 -26.73 -0.15 -1.39 16 10 C 0.13 1.22 6.46 -4.04 -0.03 1.20 16 11 N -0.31 -4.90 3.44 -61.26 -0.21 -5.11 16 12 C -0.08 -1.45 11.49 -17.05 -0.20 -1.64 16 13 C 0.03 0.80 6.44 -82.77 -0.53 0.26 16 14 C 0.09 2.38 5.55 -29.03 -0.16 2.22 16 15 C -0.50 -14.56 9.09 -34.44 -0.31 -14.87 16 16 H 0.06 1.77 7.74 -52.49 -0.41 1.36 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 19 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 23 N -0.26 -6.19 12.40 33.29 0.41 -5.77 16 24 N -0.11 -2.16 12.92 60.35 0.78 -1.38 16 25 C -0.17 -1.32 9.03 -39.45 -0.36 -1.68 16 26 C -0.17 -1.24 9.03 -39.45 -0.36 -1.60 16 27 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.05 0.19 7.66 -51.93 -0.40 -0.21 16 29 H 0.05 0.18 7.66 -51.93 -0.40 -0.21 16 30 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 31 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.07 0.40 7.65 -51.93 -0.40 0.00 16 33 H 0.07 0.37 7.67 -51.93 -0.40 -0.03 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.05 8.12 -51.93 -0.42 0.63 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.66 8.07 -51.93 -0.42 0.24 16 38 H 0.18 2.50 8.06 -52.49 -0.42 2.07 16 39 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.04 0.94 8.12 -51.93 -0.42 0.52 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.13 0.76 6.29 -52.49 -0.33 0.42 16 43 H 0.13 0.67 6.29 -52.48 -0.33 0.34 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -35.63 370.00 -6.48 -42.11 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -6.01 Total: -4.89 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -2.34 Total: -15.73 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 1.72 Total: -38.15 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.41 Total: -6.02 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.63 -6.48 -42.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603176713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.285 kcal (2) G-P(sol) polarization free energy of solvation -35.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds