Wall clock time and date at job start Tue Mar 31 2020 11:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35987 * 117.00257 * 2 1 4 4 C 1.38694 * 120.00297 * 180.02562 * 3 2 1 5 5 C 1.38133 * 120.00142 * 180.02562 * 4 3 2 6 6 C 1.38690 * 119.99721 * 359.97438 * 5 4 3 7 7 O 1.35991 * 119.99568 * 179.97438 * 6 5 4 8 8 C 1.42908 * 116.99760 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47054 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47181 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.47215 * 180.02562 * 10 9 8 12 12 C 1.35309 * 125.87027 * 124.97307 * 11 10 9 13 13 C 1.35353 * 106.17498 * 179.97438 * 12 11 10 14 14 C 1.50706 * 126.75076 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46793 * 124.99895 * 14 13 12 16 16 H 1.08001 * 119.99975 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99507 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00130 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99689 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47236 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46973 * 119.99908 * 19 17 15 22 22 H 1.48501 * 109.47442 * 240.00147 * 19 17 15 23 23 N 1.33775 * 106.49785 * 359.97438 * 13 12 11 24 24 N 1.28637 * 108.88137 * 0.02562 * 23 13 12 25 25 C 1.38692 * 120.00540 * 0.25337 * 6 5 4 26 26 C 1.38136 * 119.99526 * 359.49317 * 25 6 5 27 27 H 1.09003 * 109.47558 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47328 * 300.00224 * 1 2 3 29 29 H 1.09003 * 109.47211 * 59.99675 * 1 2 3 30 30 H 1.08004 * 120.00194 * 359.97438 * 4 3 2 31 31 H 1.08002 * 120.00188 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.46687 * 60.00077 * 8 7 6 33 33 H 1.09004 * 109.46932 * 300.00573 * 8 7 6 34 34 H 1.09001 * 109.46985 * 59.99804 * 9 8 7 35 35 H 1.09007 * 109.47030 * 300.00000 * 9 8 7 36 36 H 1.08997 * 109.46834 * 59.99681 * 10 9 8 37 37 H 1.09007 * 109.46928 * 299.99805 * 10 9 8 38 38 H 1.08002 * 126.91313 * 0.02562 * 12 11 10 39 39 H 1.08997 * 109.46870 * 244.99788 * 14 13 12 40 40 H 1.09004 * 109.46999 * 5.00398 * 14 13 12 41 41 H 0.97003 * 119.99723 * 180.02562 * 18 17 15 42 42 H 1.08000 * 120.00249 * 179.72399 * 25 6 5 43 43 H 1.08007 * 120.00032 * 180.22761 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4314 1.2842 -0.0005 5 6 4.0585 2.5150 0.0000 6 6 3.3031 3.6781 0.0005 7 8 3.9205 4.8898 0.0016 8 6 3.0806 6.0459 0.0015 9 6 3.9478 7.3063 0.0021 10 6 3.0485 8.5442 0.0027 11 7 3.8789 9.7511 0.0027 12 6 3.8102 10.7607 -0.8955 13 6 4.7477 11.6625 -0.5215 14 6 5.0662 12.9679 -1.2041 15 6 4.9622 14.0940 -0.2080 16 1 4.6928 13.8853 0.8168 17 6 5.2109 15.3907 -0.6052 18 7 5.5384 15.6448 -1.8533 19 14 5.0827 16.7865 0.6296 20 1 4.7022 16.2399 1.9568 21 1 6.3940 17.4753 0.7359 22 1 4.0506 17.7539 0.1778 23 7 5.3359 11.1673 0.5731 24 7 4.7986 10.0337 0.8577 25 6 1.9181 3.6056 0.0058 26 6 1.2910 2.3748 0.0000 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 4.0196 0.3784 -0.0005 31 1 5.1370 2.5715 0.0000 32 1 2.4507 6.0373 0.8910 33 1 2.4519 6.0382 -0.8889 34 1 4.5774 7.3146 -0.8876 35 1 4.5767 7.3142 0.8924 36 1 2.4192 8.5356 0.8926 37 1 2.4192 8.5365 -0.8874 38 1 3.1413 10.8329 -1.7404 39 1 6.0788 12.9302 -1.6056 40 1 4.3591 13.1350 -2.0166 41 1 5.7137 16.5571 -2.1325 42 1 1.3299 4.5114 0.0108 43 1 0.2124 2.3183 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603176713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:04 Heat of formation + Delta-G solvation = 19.723330 kcal Electronic energy + Delta-G solvation = -24149.728639 eV Core-core repulsion = 20390.123844 eV Total energy + Delta-G solvation = -3759.604796 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.03339 -41.38303 -40.01322 -37.59282 -36.61605 -35.34993 -33.20102 -32.74262 -32.14580 -30.28415 -29.38099 -28.00070 -27.44450 -25.47369 -24.45581 -23.08817 -22.61132 -22.53465 -21.40581 -19.44335 -18.77496 -18.47650 -17.95281 -17.48313 -17.31732 -16.97042 -16.57982 -16.51997 -15.79281 -15.63489 -15.31687 -15.23476 -14.64526 -14.47719 -14.37264 -14.26272 -13.83653 -13.64981 -13.53764 -13.37346 -12.89504 -12.85889 -12.73418 -12.64332 -12.47189 -12.41791 -12.01973 -11.83089 -11.64455 -11.61861 -11.35657 -11.29007 -10.84722 -10.57873 -10.08424 -9.84852 -8.73611 -8.18405 -6.26944 0.25216 0.45322 0.76410 1.40137 1.41988 1.50623 1.55316 1.78100 2.23572 2.44928 2.45091 2.72755 3.14512 3.53329 3.69601 3.77155 3.80675 3.85161 3.94758 4.12249 4.16497 4.27521 4.29290 4.33727 4.37430 4.41641 4.49332 4.50834 4.52310 4.69687 4.75706 4.88250 4.93072 5.02841 5.08824 5.28049 5.31550 5.32710 5.45900 5.55620 5.58418 5.77684 5.85800 6.23502 6.33715 6.53163 6.81744 7.39893 7.72743 8.92648 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.048898 B = 0.001595 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.481798 B =17545.498183 C =17693.556506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.076 3.924 4 C -0.122 4.122 5 C -0.125 4.125 6 C 0.080 3.920 7 O -0.334 6.334 8 C 0.067 3.933 9 C -0.126 4.126 10 C 0.116 3.884 11 N -0.286 5.286 12 C -0.047 4.047 13 C -0.012 4.012 14 C 0.102 3.898 15 C -0.524 4.524 16 H 0.044 0.956 17 C 0.009 3.991 18 N -0.927 5.927 19 Si 0.962 3.038 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.270 1.270 23 N -0.311 5.311 24 N -0.120 5.120 25 C -0.170 4.170 26 C -0.170 4.170 27 H 0.116 0.884 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.120 0.880 37 H 0.149 0.851 38 H 0.229 0.771 39 H 0.006 0.994 40 H 0.036 0.964 41 H 0.266 0.734 42 H 0.155 0.845 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.844 -32.419 0.644 36.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.031 3.969 4 C -0.140 4.140 5 C -0.143 4.143 6 C 0.035 3.965 7 O -0.249 6.249 8 C -0.009 4.009 9 C -0.165 4.165 10 C -0.003 4.003 11 N -0.082 5.082 12 C -0.198 4.198 13 C -0.150 4.150 14 C 0.063 3.937 15 C -0.563 4.563 16 H 0.062 0.938 17 C -0.189 4.189 18 N -0.567 5.567 19 Si 0.787 3.213 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.195 1.195 23 N -0.177 5.177 24 N -0.099 5.099 25 C -0.188 4.188 26 C -0.188 4.188 27 H 0.134 0.866 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.164 0.836 31 H 0.159 0.841 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.138 0.862 37 H 0.167 0.833 38 H 0.245 0.755 39 H 0.024 0.976 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.173 0.827 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.796 -32.935 1.812 36.151 hybrid contribution -0.519 1.388 -0.412 1.538 sum -15.315 -31.546 1.400 35.095 Atomic orbital electron populations 1.23313 0.76668 1.05452 1.02169 1.86053 1.23241 1.26673 1.89259 1.19139 0.92609 0.84924 1.00251 1.20426 0.91871 0.98139 1.03590 1.20446 1.00863 0.89338 1.03701 1.19087 0.91815 0.85275 1.00328 1.86044 1.36939 1.12628 1.89315 1.22710 0.92564 0.81704 1.03887 1.21623 0.98893 0.91687 1.04253 1.22289 0.91464 0.78098 1.08490 1.47532 1.25434 1.17206 1.18023 1.23801 1.05478 0.89818 1.00658 1.22708 0.97360 0.99643 0.95316 1.17393 0.96080 0.85884 0.94361 1.21328 1.46827 0.92223 0.95887 0.93770 1.25782 0.94715 1.01233 0.97210 1.70044 1.48153 1.21031 1.17454 0.85444 0.78069 0.78824 0.78954 1.19907 1.20321 1.19524 1.74993 1.24121 1.03193 1.15441 1.78054 1.03583 1.11961 1.16304 1.21341 0.92852 0.99587 1.05026 1.21326 1.01251 0.91183 1.05049 0.86616 0.91796 0.91751 0.83597 0.84066 0.89641 0.89031 0.91090 0.91248 0.86196 0.83330 0.75505 0.97557 0.94575 0.92510 0.82706 0.82907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.23 16 2 O -0.34 -4.95 10.50 -93.40 -0.98 -5.93 16 3 C 0.08 1.18 6.69 22.49 0.15 1.33 16 4 C -0.12 -1.94 9.98 22.35 0.22 -1.72 16 5 C -0.12 -2.13 9.98 22.35 0.22 -1.90 16 6 C 0.08 1.37 6.68 22.49 0.15 1.52 16 7 O -0.33 -6.21 10.14 -93.44 -0.95 -7.16 16 8 C 0.07 0.77 4.74 71.98 0.34 1.11 16 9 C -0.13 -2.07 5.71 30.59 0.17 -1.89 16 10 C 0.12 1.75 6.46 86.38 0.56 2.30 16 11 N -0.29 -8.51 3.44 -347.73 -1.20 -9.70 16 12 C -0.05 -1.58 11.49 83.49 0.96 -0.62 16 13 C -0.01 -0.56 6.44 41.60 0.27 -0.29 16 14 C 0.10 5.48 5.55 29.10 0.16 5.65 16 15 C -0.52 -31.12 9.09 25.60 0.23 -30.88 16 16 H 0.04 2.70 7.74 -2.91 -0.02 2.67 16 17 C 0.01 0.51 5.46 84.66 0.46 0.97 16 18 N -0.93 -55.57 13.29 21.45 0.28 -55.29 16 19 Si 0.96 45.69 29.54 68.60 2.03 47.72 16 20 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 N -0.31 -15.21 12.40 -48.59 -0.60 -15.81 16 24 N -0.12 -4.81 12.92 37.02 0.48 -4.33 16 25 C -0.17 -2.21 9.03 22.35 0.20 -2.00 16 26 C -0.17 -2.12 9.03 22.35 0.20 -1.92 16 27 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.06 0.29 7.66 -2.38 -0.02 0.27 16 29 H 0.06 0.28 7.66 -2.39 -0.02 0.26 16 30 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 31 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.09 0.69 7.65 -2.39 -0.02 0.67 16 33 H 0.09 0.61 7.67 -2.39 -0.02 0.59 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.50 8.12 -2.38 -0.02 1.48 16 36 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.15 0.99 8.07 -2.38 -0.02 0.97 16 38 H 0.23 5.22 8.06 -2.91 -0.02 5.20 16 39 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.04 1.90 8.12 -2.39 -0.02 1.88 16 41 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 42 H 0.16 1.15 6.29 -2.91 -0.02 1.14 16 43 H 0.15 1.10 6.29 -2.91 -0.02 1.08 16 Total: -1.00 -81.30 370.00 5.50 -75.81 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: 1.01 Total: 1.82 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 5.42 Total: -27.12 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -1.04 Total: -85.13 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -1.93 Total: -13.09 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -81.30 5.50 -75.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603176713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.531 kcal (2) G-P(sol) polarization free energy of solvation -81.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds