Wall clock time and date at job start Tue Mar 31 2020 11:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99600 * 2 1 4 4 C 1.38737 * 120.05249 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94063 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05706 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 O 1.42902 * 109.46976 * 90.00421 * 7 6 5 9 9 C 1.42901 * 113.99925 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47139 * 179.97438 * 9 8 7 11 11 N 1.46501 * 109.46962 * 179.97438 * 10 9 8 12 12 C 1.35310 * 125.86415 * 124.71931 * 11 10 9 13 13 C 1.35354 * 106.17145 * 179.90354 * 12 11 10 14 14 C 1.50702 * 126.74900 * 180.12436 * 13 12 11 15 15 C 1.50704 * 109.46734 * 125.24741 * 14 13 12 16 16 H 1.07996 * 120.00482 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99735 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99738 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00181 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46806 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47031 * 119.99962 * 19 17 15 22 22 H 1.48498 * 109.47345 * 240.00182 * 19 17 15 23 23 N 1.33774 * 106.49691 * 0.34765 * 13 12 11 24 24 N 1.28634 * 108.88613 * 359.77871 * 23 13 12 25 25 C 1.38263 * 120.11156 * 0.25962 * 6 5 4 26 26 C 1.38143 * 120.05579 * 359.44512 * 25 6 5 27 27 H 1.08995 * 109.47478 * 299.99538 * 1 2 3 28 28 H 1.08998 * 109.47227 * 59.99807 * 1 2 3 29 29 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 30 30 H 1.07994 * 120.02908 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.97159 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.46646 * 209.99692 * 7 6 5 33 33 H 1.09000 * 109.47248 * 330.00409 * 7 6 5 34 34 H 1.08997 * 109.46882 * 299.99956 * 9 8 7 35 35 H 1.09001 * 109.46995 * 59.99661 * 9 8 7 36 36 H 1.09001 * 109.47182 * 300.00347 * 10 9 8 37 37 H 1.08997 * 109.46799 * 60.00189 * 10 9 8 38 38 H 1.07996 * 126.91509 * 0.02562 * 12 11 10 39 39 H 1.09002 * 109.47076 * 245.24114 * 14 13 12 40 40 H 1.08995 * 109.47570 * 5.24414 * 14 13 12 41 41 H 0.97003 * 119.99481 * 179.97438 * 18 17 15 42 42 H 1.08001 * 119.97259 * 179.69844 * 25 6 5 43 43 H 1.07992 * 120.02912 * 180.24892 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0187 0.0028 8 8 4.2015 5.4446 -1.3442 9 6 4.8476 6.7143 -1.4559 10 6 5.0266 7.0671 -2.9339 11 7 5.6885 8.3691 -3.0484 12 6 6.8278 8.6216 -3.7332 13 6 7.0774 9.9426 -3.5756 14 6 8.2364 10.7160 -4.1498 15 6 7.7154 11.8898 -4.9385 16 1 6.6516 12.0590 -5.0158 17 6 8.5970 12.7482 -5.5605 18 7 9.8926 12.5429 -5.4651 19 14 7.9514 14.2028 -6.5387 20 1 6.4671 14.2114 -6.4913 21 1 8.4722 15.4638 -5.9525 22 1 8.4014 14.0897 -7.9493 23 7 6.0958 10.4254 -2.8057 24 7 5.2891 9.4680 -2.5103 25 6 1.9209 3.6048 0.0081 26 6 1.2914 2.3752 0.0014 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 4.0208 0.3801 -0.0005 31 1 5.1344 2.5752 -0.0008 32 1 3.3580 5.7459 0.5176 33 1 4.9441 4.9378 0.5160 34 1 4.2373 7.4764 -0.9713 35 1 5.8236 6.6690 -0.9727 36 1 5.6370 6.3049 -3.4181 37 1 4.0507 7.1123 -3.4173 38 1 7.4180 7.9124 -4.2945 39 1 8.8705 11.0755 -3.3394 40 1 8.8173 10.0670 -4.8051 41 1 10.5128 13.1467 -5.9030 42 1 1.3340 4.5114 0.0143 43 1 0.2129 2.3202 0.0024 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603220583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:28 Heat of formation + Delta-G solvation = 39.243443 kcal Electronic energy + Delta-G solvation = -24123.228700 eV Core-core repulsion = 20364.470360 eV Total energy + Delta-G solvation = -3758.758340 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.55118 -40.59728 -38.79191 -37.53484 -34.81342 -33.21147 -31.84139 -31.45021 -31.05723 -29.51824 -28.06106 -27.33403 -25.70251 -23.98759 -23.30844 -23.10150 -21.67523 -21.14750 -19.99646 -18.63001 -17.44568 -16.95345 -16.60662 -16.29100 -16.19008 -16.02389 -15.92449 -15.46332 -14.90181 -14.52047 -14.29794 -14.03905 -13.95998 -13.78576 -13.40744 -13.10752 -12.66154 -12.47432 -12.23357 -12.08817 -11.79558 -11.75449 -11.62217 -11.36816 -11.24136 -11.00657 -10.72724 -10.65977 -10.11500 -9.98200 -9.71337 -9.46546 -9.42696 -9.29287 -8.62021 -8.44170 -8.14597 -5.98689 -3.99127 0.86996 0.93303 2.15669 2.52453 2.79261 3.22230 3.36052 3.41487 3.45213 3.52767 3.76510 4.30312 4.38405 4.43059 4.51867 4.53253 4.57931 4.65242 4.76372 4.80199 4.88501 4.97025 4.99338 5.04392 5.13040 5.16792 5.26313 5.34550 5.38813 5.42950 5.59490 5.79776 5.84604 5.89960 6.05284 6.18467 6.28508 6.29497 6.71872 6.91162 7.10673 7.15483 7.52970 7.62134 7.99452 8.37507 9.04651 9.26930 9.63827 11.12458 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.044391 B = 0.001616 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.613276 B =17326.366241 C =17486.985584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.132 3.868 4 C -0.155 4.155 5 C -0.057 4.057 6 C -0.128 4.128 7 C 0.110 3.890 8 O -0.380 6.380 9 C 0.052 3.948 10 C 0.126 3.874 11 N -0.305 5.305 12 C -0.077 4.077 13 C 0.035 3.965 14 C 0.091 3.909 15 C -0.503 4.503 16 H 0.060 0.940 17 C 0.057 3.943 18 N -0.898 5.898 19 Si 0.896 3.104 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.285 1.285 23 N -0.258 5.258 24 N -0.111 5.111 25 C -0.056 4.056 26 C -0.212 4.212 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.183 0.817 39 H 0.040 0.960 40 H 0.037 0.963 41 H 0.261 0.739 42 H 0.128 0.872 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.331 -27.103 12.448 34.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.087 3.913 4 C -0.174 4.174 5 C -0.075 4.075 6 C -0.128 4.128 7 C 0.033 3.967 8 O -0.299 6.299 9 C -0.025 4.025 10 C 0.004 3.996 11 N -0.102 5.102 12 C -0.226 4.226 13 C -0.102 4.102 14 C 0.053 3.947 15 C -0.542 4.542 16 H 0.078 0.922 17 C -0.144 4.144 18 N -0.538 5.538 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.211 1.211 23 N -0.125 5.125 24 N -0.089 5.089 25 C -0.074 4.074 26 C -0.230 4.230 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.200 0.800 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.145 0.855 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.242 -26.696 13.119 34.381 hybrid contribution 0.258 0.375 -1.081 1.173 sum -16.984 -26.321 12.038 33.559 Atomic orbital electron populations 1.23082 0.78187 1.04085 1.01512 1.86078 1.21577 1.26958 1.88534 1.19110 0.92449 0.84183 0.95598 1.20433 0.91379 0.98709 1.06835 1.20903 1.00047 0.90830 0.95730 1.19485 0.93564 0.94070 1.05705 1.21253 0.99099 0.92584 0.83714 1.87858 1.80070 1.35529 1.26478 1.22612 0.97958 0.86044 0.95905 1.21524 1.00038 0.80708 0.97337 1.46987 1.18754 1.08978 1.35434 1.23405 0.92742 0.99751 1.06680 1.23056 0.98805 0.91053 0.97330 1.17745 0.87743 0.93813 0.95420 1.21094 0.93357 1.09334 1.30428 0.92207 1.24975 0.94807 0.97950 0.96685 1.69959 1.01232 1.38119 1.44470 0.86455 0.79188 0.82434 0.79500 1.19707 1.20947 1.21098 1.75079 1.02658 1.20648 1.14155 1.78182 1.22782 0.88401 1.19572 1.20877 0.93818 0.97281 0.95450 1.21231 1.00166 0.92224 1.09399 0.92541 0.92480 0.88133 0.84951 0.85022 0.92098 0.92134 0.91225 0.92318 0.87299 0.88113 0.79953 0.94247 0.94467 0.92978 0.85452 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.32 -2.55 10.50 -19.44 -0.20 -2.75 16 3 C 0.13 1.12 6.69 -39.21 -0.26 0.86 16 4 C -0.15 -1.26 9.99 -39.43 -0.39 -1.66 16 5 C -0.06 -0.45 9.69 -39.61 -0.38 -0.84 16 6 C -0.13 -1.08 5.51 -104.60 -0.58 -1.66 16 7 C 0.11 0.90 6.06 36.01 0.22 1.12 16 8 O -0.38 -3.86 10.33 -35.23 -0.36 -4.22 16 9 C 0.05 0.55 6.06 37.16 0.23 0.77 16 10 C 0.13 1.43 6.82 -4.04 -0.03 1.40 16 11 N -0.30 -5.04 3.44 -61.26 -0.21 -5.25 16 12 C -0.08 -1.40 11.49 -17.05 -0.20 -1.59 16 13 C 0.03 0.79 6.44 -82.77 -0.53 0.26 16 14 C 0.09 2.39 5.55 -29.03 -0.16 2.23 16 15 C -0.50 -14.57 9.09 -34.44 -0.31 -14.89 16 16 H 0.06 1.77 7.74 -52.49 -0.41 1.37 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 19 Si 0.90 22.16 29.54 -169.99 -5.02 17.13 16 20 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 N -0.26 -6.14 12.40 33.29 0.41 -5.73 16 24 N -0.11 -2.24 12.91 60.35 0.78 -1.46 16 25 C -0.06 -0.45 9.69 -39.61 -0.38 -0.83 16 26 C -0.21 -1.60 9.04 -39.43 -0.36 -1.96 16 27 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 28 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 29 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 31 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 33 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 34 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.11 0.97 8.07 -51.93 -0.42 0.56 16 37 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.18 2.59 8.06 -52.49 -0.42 2.17 16 39 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.04 0.96 8.12 -51.93 -0.42 0.54 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.13 0.71 6.30 -52.49 -0.33 0.37 16 LS Contribution 374.07 15.07 5.64 5.64 Total: -1.00 -34.85 374.07 -6.64 -41.48 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -6.15 Total: -4.81 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -2.25 Total: -14.14 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 1.72 Total: -38.33 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.57 Total: -6.97 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.85 -6.64 -41.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603220583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.728 kcal (2) G-P(sol) polarization free energy of solvation -34.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds