Wall clock time and date at job start Tue Mar 31 2020 11:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99600 * 2 1 4 4 C 1.38737 * 120.05249 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94063 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05706 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 O 1.42902 * 109.46976 * 90.00421 * 7 6 5 9 9 C 1.42901 * 113.99925 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47139 * 179.97438 * 9 8 7 11 11 N 1.46501 * 109.46962 * 179.97438 * 10 9 8 12 12 C 1.35310 * 125.86415 * 124.71931 * 11 10 9 13 13 C 1.35354 * 106.17145 * 179.90354 * 12 11 10 14 14 C 1.50702 * 126.74900 * 180.12436 * 13 12 11 15 15 C 1.50704 * 109.46734 * 125.24741 * 14 13 12 16 16 H 1.07996 * 120.00482 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99735 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99738 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00181 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46806 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47031 * 119.99962 * 19 17 15 22 22 H 1.48498 * 109.47345 * 240.00182 * 19 17 15 23 23 N 1.33774 * 106.49691 * 0.34765 * 13 12 11 24 24 N 1.28634 * 108.88613 * 359.77871 * 23 13 12 25 25 C 1.38263 * 120.11156 * 0.25962 * 6 5 4 26 26 C 1.38143 * 120.05579 * 359.44512 * 25 6 5 27 27 H 1.08995 * 109.47478 * 299.99538 * 1 2 3 28 28 H 1.08998 * 109.47227 * 59.99807 * 1 2 3 29 29 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 30 30 H 1.07994 * 120.02908 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.97159 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.46646 * 209.99692 * 7 6 5 33 33 H 1.09000 * 109.47248 * 330.00409 * 7 6 5 34 34 H 1.08997 * 109.46882 * 299.99956 * 9 8 7 35 35 H 1.09001 * 109.46995 * 59.99661 * 9 8 7 36 36 H 1.09001 * 109.47182 * 300.00347 * 10 9 8 37 37 H 1.08997 * 109.46799 * 60.00189 * 10 9 8 38 38 H 1.07996 * 126.91509 * 0.02562 * 12 11 10 39 39 H 1.09002 * 109.47076 * 245.24114 * 14 13 12 40 40 H 1.08995 * 109.47570 * 5.24414 * 14 13 12 41 41 H 0.97003 * 119.99481 * 179.97438 * 18 17 15 42 42 H 1.08001 * 119.97259 * 179.69844 * 25 6 5 43 43 H 1.07992 * 120.02912 * 180.24892 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0187 0.0028 8 8 4.2015 5.4446 -1.3442 9 6 4.8476 6.7143 -1.4559 10 6 5.0266 7.0671 -2.9339 11 7 5.6885 8.3691 -3.0484 12 6 6.8278 8.6216 -3.7332 13 6 7.0774 9.9426 -3.5756 14 6 8.2364 10.7160 -4.1498 15 6 7.7154 11.8898 -4.9385 16 1 6.6516 12.0590 -5.0158 17 6 8.5970 12.7482 -5.5605 18 7 9.8926 12.5429 -5.4651 19 14 7.9514 14.2028 -6.5387 20 1 6.4671 14.2114 -6.4913 21 1 8.4722 15.4638 -5.9525 22 1 8.4014 14.0897 -7.9493 23 7 6.0958 10.4254 -2.8057 24 7 5.2891 9.4680 -2.5103 25 6 1.9209 3.6048 0.0081 26 6 1.2914 2.3752 0.0014 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 4.0208 0.3801 -0.0005 31 1 5.1344 2.5752 -0.0008 32 1 3.3580 5.7459 0.5176 33 1 4.9441 4.9378 0.5160 34 1 4.2373 7.4764 -0.9713 35 1 5.8236 6.6690 -0.9727 36 1 5.6370 6.3049 -3.4181 37 1 4.0507 7.1123 -3.4173 38 1 7.4180 7.9124 -4.2945 39 1 8.8705 11.0755 -3.3394 40 1 8.8173 10.0670 -4.8051 41 1 10.5128 13.1467 -5.9030 42 1 1.3340 4.5114 0.0143 43 1 0.2129 2.3202 0.0024 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603220583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:27 Heat of formation + Delta-G solvation = 16.793554 kcal Electronic energy + Delta-G solvation = -24124.202201 eV Core-core repulsion = 20364.470360 eV Total energy + Delta-G solvation = -3759.731840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.07399 -41.13662 -39.46466 -38.17494 -36.21421 -35.14258 -32.90802 -32.49907 -32.03120 -30.59245 -29.22801 -28.45620 -26.34794 -25.51366 -24.85844 -23.65015 -22.66066 -22.21543 -21.50144 -19.15170 -18.65249 -18.24324 -17.69877 -17.44967 -17.03627 -16.70229 -16.65860 -16.55753 -16.46120 -15.54232 -15.46765 -14.98777 -14.69463 -14.54679 -14.33199 -14.30460 -13.96670 -13.73260 -13.58491 -12.99872 -12.89744 -12.70512 -12.67227 -12.64906 -12.41885 -12.31018 -11.92365 -11.87590 -11.76216 -11.65858 -11.36436 -10.90213 -10.72330 -10.57502 -9.99505 -9.87126 -9.19649 -8.17955 -6.26343 0.26870 0.36189 0.72387 1.38196 1.40990 1.42465 1.55469 1.75867 2.34680 2.45551 2.52337 3.02537 3.15077 3.50808 3.72251 3.77370 3.79352 3.91336 4.06759 4.14039 4.17478 4.24764 4.31663 4.36930 4.37671 4.44828 4.47255 4.48094 4.59298 4.61708 4.72497 4.73543 4.85268 5.05203 5.23449 5.30894 5.33461 5.44701 5.55709 5.60234 5.75435 5.77258 5.78217 6.02688 6.23623 6.40134 6.82286 7.40432 7.68928 8.93092 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.044391 B = 0.001616 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.613276 B =17326.366241 C =17486.985584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.119 3.881 4 C -0.168 4.168 5 C -0.062 4.062 6 C -0.141 4.141 7 C 0.107 3.893 8 O -0.387 6.387 9 C 0.061 3.939 10 C 0.117 3.883 11 N -0.286 5.286 12 C -0.045 4.045 13 C -0.009 4.009 14 C 0.102 3.898 15 C -0.524 4.524 16 H 0.044 0.956 17 C 0.009 3.991 18 N -0.926 5.926 19 Si 0.962 3.038 20 H -0.275 1.275 21 H -0.277 1.277 22 H -0.271 1.271 23 N -0.305 5.305 24 N -0.119 5.119 25 C -0.065 4.065 26 C -0.215 4.215 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.118 0.882 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.143 0.857 37 H 0.114 0.886 38 H 0.227 0.773 39 H 0.009 0.991 40 H 0.036 0.964 41 H 0.266 0.734 42 H 0.139 0.861 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.393 -28.593 11.921 35.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.074 3.926 4 C -0.187 4.187 5 C -0.080 4.080 6 C -0.142 4.142 7 C 0.031 3.969 8 O -0.306 6.306 9 C -0.017 4.017 10 C -0.003 4.003 11 N -0.082 5.082 12 C -0.194 4.194 13 C -0.147 4.147 14 C 0.063 3.937 15 C -0.563 4.563 16 H 0.063 0.937 17 C -0.189 4.189 18 N -0.566 5.566 19 Si 0.787 3.213 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.196 1.196 23 N -0.172 5.172 24 N -0.097 5.097 25 C -0.083 4.083 26 C -0.234 4.234 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.136 0.864 30 H 0.158 0.842 31 H 0.163 0.837 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.161 0.839 37 H 0.132 0.868 38 H 0.244 0.756 39 H 0.027 0.973 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.157 0.843 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.337 -28.212 12.613 35.934 hybrid contribution 0.501 0.656 -0.861 1.193 sum -17.837 -27.556 11.752 34.865 Atomic orbital electron populations 1.23343 0.76450 1.05592 1.02271 1.86054 1.23489 1.26941 1.88505 1.19334 0.92841 0.84702 0.95729 1.20654 0.91723 0.99233 1.07086 1.21101 1.00834 0.90646 0.95394 1.19619 0.93948 0.94245 1.06360 1.21381 0.99887 0.92672 0.82959 1.87838 1.80046 1.35001 1.27719 1.22434 0.97984 0.86164 0.95145 1.22004 1.01031 0.78697 0.98532 1.47324 1.17902 1.09763 1.33241 1.23799 0.92387 0.98434 1.04815 1.22696 0.99000 0.93150 0.99838 1.17401 0.88690 0.93481 0.94135 1.21330 0.92739 1.10911 1.31317 0.93749 1.25777 0.95020 1.00547 0.97563 1.70047 1.02222 1.39230 1.45150 0.85448 0.78310 0.79023 0.78539 1.19921 1.20251 1.19627 1.74991 1.03773 1.22766 1.15653 1.78066 1.22428 0.89070 1.20186 1.21107 0.93955 0.97934 0.95294 1.21454 1.01176 0.91847 1.08922 0.91607 0.91836 0.86382 0.84203 0.83684 0.91389 0.91049 0.92236 0.92071 0.83912 0.86812 0.75638 0.97279 0.94588 0.92511 0.84330 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.24 16 2 O -0.34 -5.08 10.50 -92.47 -0.97 -6.05 16 3 C 0.12 1.92 6.69 22.51 0.15 2.07 16 4 C -0.17 -2.61 9.99 22.37 0.22 -2.39 16 5 C -0.06 -0.91 9.69 22.25 0.22 -0.69 16 6 C -0.14 -2.19 5.51 -19.85 -0.11 -2.30 16 7 C 0.11 1.56 6.06 71.24 0.43 2.00 16 8 O -0.39 -6.93 10.33 -148.98 -1.54 -8.46 16 9 C 0.06 1.12 6.06 71.98 0.44 1.56 16 10 C 0.12 2.27 6.82 86.38 0.59 2.86 16 11 N -0.29 -8.81 3.44 -347.74 -1.20 -10.01 16 12 C -0.04 -1.51 11.49 83.49 0.96 -0.55 16 13 C -0.01 -0.41 6.44 41.60 0.27 -0.14 16 14 C 0.10 5.46 5.55 29.10 0.16 5.62 16 15 C -0.52 -31.05 9.09 25.60 0.23 -30.81 16 16 H 0.04 2.70 7.74 -2.91 -0.02 2.68 16 17 C 0.01 0.53 5.46 84.66 0.46 0.99 16 18 N -0.93 -55.42 13.29 21.45 0.28 -55.14 16 19 Si 0.96 45.67 29.54 68.60 2.03 47.69 16 20 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 23 N -0.31 -14.73 12.40 -48.60 -0.60 -15.34 16 24 N -0.12 -4.72 12.91 37.02 0.48 -4.24 16 25 C -0.06 -0.94 9.69 22.25 0.22 -0.73 16 26 C -0.22 -2.99 9.04 22.37 0.20 -2.79 16 27 H 0.07 0.33 7.66 -2.39 -0.02 0.32 16 28 H 0.06 0.36 7.66 -2.39 -0.02 0.34 16 29 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 31 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 33 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 34 H 0.06 1.23 8.12 -2.39 -0.02 1.21 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.14 1.88 8.07 -2.39 -0.02 1.86 16 37 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.23 5.48 8.06 -2.91 -0.02 5.46 16 39 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.04 1.89 8.12 -2.39 -0.02 1.87 16 41 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 42 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 43 H 0.15 1.36 6.30 -2.91 -0.02 1.34 16 Total: -1.00 -76.75 374.07 5.04 -71.71 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: 1.00 Total: 3.91 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 5.55 Total: -24.07 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -1.04 Total: -84.73 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -2.51 Total: -14.52 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -76.75 5.04 -71.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603220583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.501 kcal (2) G-P(sol) polarization free energy of solvation -76.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds