Wall clock time and date at job start Tue Mar 31 2020 11:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42898 * 114.00063 * 2 1 4 4 C 1.53006 * 109.47039 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46935 * 64.99799 * 4 3 2 6 6 C 1.46495 * 120.00246 * 270.00008 * 5 4 3 7 7 C 1.50705 * 109.46920 * 269.99918 * 6 5 4 8 8 H 1.07996 * 120.00064 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99760 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99968 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99753 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46876 * 60.00207 * 11 9 7 13 13 H 1.48497 * 109.46948 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47210 * 299.99942 * 11 9 7 15 15 C 1.34780 * 119.99709 * 89.99888 * 5 4 3 16 16 O 1.21282 * 120.00308 * 0.02562 * 15 5 4 17 17 C 1.50702 * 119.99864 * 179.97438 * 15 5 4 18 18 C 1.50698 * 109.46990 * 180.02562 * 17 15 5 19 19 C 1.35108 * 125.68613 * 125.00185 * 18 17 15 20 20 N 1.36838 * 107.18141 * 180.02562 * 19 18 17 21 21 C 1.36482 * 132.57179 * 179.97438 * 20 19 18 22 22 C 1.34948 * 120.61123 * 179.97438 * 21 20 19 23 23 C 1.40477 * 120.29984 * 0.03985 * 22 21 20 24 24 C 1.36025 * 119.69114 * 359.97438 * 23 22 21 25 25 C 1.37081 * 106.99516 * 0.02562 * 20 19 18 26 26 N 1.32556 * 108.04019 * 359.97438 * 25 20 19 27 27 H 1.09006 * 109.46949 * 60.00140 * 1 2 3 28 28 H 1.09003 * 109.47296 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47829 * 300.00149 * 1 2 3 30 30 H 1.08999 * 109.47456 * 59.99883 * 3 2 1 31 31 H 1.08998 * 109.47445 * 299.99532 * 3 2 1 32 32 H 1.09003 * 109.46981 * 304.99749 * 4 3 2 33 33 H 1.08996 * 109.46840 * 184.99891 * 4 3 2 34 34 H 1.08994 * 109.47486 * 29.99810 * 6 5 4 35 35 H 1.08995 * 109.47359 * 150.00430 * 6 5 4 36 36 H 0.97006 * 119.99914 * 179.97438 * 10 9 7 37 37 H 1.08999 * 109.46706 * 60.00311 * 17 15 5 38 38 H 1.09004 * 109.47466 * 300.00276 * 17 15 5 39 39 H 1.08005 * 126.41030 * 0.02562 * 19 18 17 40 40 H 1.08003 * 119.69297 * 0.03648 * 21 20 19 41 41 H 1.07998 * 119.85026 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.15010 * 180.25917 * 23 22 21 43 43 H 1.08000 * 120.33361 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5638 -1.2508 6 6 4.1061 -0.8926 -1.3403 7 6 5.5016 -1.2982 -0.9412 8 1 6.2202 -0.5462 -0.6505 9 6 5.8609 -2.6294 -0.9472 10 7 4.9860 -3.5450 -1.3017 11 14 7.5905 -3.1322 -0.4519 12 1 7.8522 -2.6963 0.9434 13 1 7.7219 -4.6086 -0.5426 14 1 8.5724 -2.4915 -1.3632 15 6 4.2632 1.3328 -2.3200 16 8 4.1564 2.5386 -2.2459 17 6 4.7176 0.6943 -3.6072 18 6 4.9713 1.7651 -4.6369 19 6 6.1224 1.9435 -5.3213 20 7 5.9380 3.0169 -6.1497 21 6 6.7519 3.6365 -7.0532 22 6 6.3127 4.7009 -7.7569 23 6 5.0083 5.1866 -7.5672 24 6 4.1867 4.5785 -6.6697 25 6 4.6604 3.4684 -5.9421 26 7 4.0963 2.6962 -5.0241 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3635 0.5138 0.8899 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8507 0.5685 0.8428 33 1 3.9784 2.1764 0.0902 34 1 3.3857 -1.3633 -0.6713 35 1 3.9138 -1.2123 -2.3644 36 1 5.2389 -4.4815 -1.3063 37 1 3.9442 0.0172 -3.9697 38 1 5.6366 0.1352 -3.4310 39 1 7.0202 1.3499 -5.2315 40 1 7.7565 3.2710 -7.2071 41 1 6.9670 5.1817 -8.4690 42 1 4.6578 6.0361 -8.1347 43 1 3.1818 4.9431 -6.5159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609136870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:10 Heat of formation + Delta-G solvation = 13.803027 kcal Electronic energy + Delta-G solvation = -26289.151982 eV Core-core repulsion = 22529.290462 eV Total energy + Delta-G solvation = -3759.861519 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.60666 -39.04734 -37.49046 -37.05872 -34.72138 -33.52620 -32.56692 -31.70417 -29.86579 -28.97088 -27.43849 -26.88091 -25.71727 -23.41425 -22.78572 -22.56020 -22.37561 -20.46426 -18.24088 -17.55951 -16.82183 -16.48639 -16.40743 -15.89841 -15.78837 -15.55756 -15.32648 -14.85338 -14.66943 -14.45722 -14.25734 -14.02915 -13.71110 -12.87755 -12.56730 -12.43823 -12.29188 -11.97490 -11.78239 -11.73400 -11.60123 -11.37925 -11.32883 -11.12546 -10.92248 -10.89995 -10.79101 -10.44751 -10.07905 -9.74046 -9.65575 -9.28477 -8.91311 -8.53231 -8.39420 -7.71308 -7.55155 -6.08103 -4.15381 0.77741 1.36605 2.71191 3.02361 3.28111 3.33577 3.35612 3.59063 3.65953 4.09166 4.26601 4.30727 4.41370 4.48603 4.74727 4.83217 5.06068 5.23926 5.42138 5.44210 5.48437 5.50739 5.59221 5.67298 5.76092 5.80479 5.83248 5.87764 5.94053 6.01932 6.09876 6.20273 6.24968 6.27945 6.47867 6.53713 6.84361 6.98387 7.22600 7.42707 7.58586 7.71063 7.89792 8.17894 8.19335 8.51395 8.90753 9.19935 9.51689 10.98149 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010954 B = 0.004031 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.474786 B = 6945.350563 C = 8964.615953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.048 3.952 4 C 0.125 3.875 5 N -0.591 5.591 6 C 0.239 3.761 7 C -0.539 4.539 8 H 0.059 0.941 9 C 0.066 3.934 10 N -0.889 5.889 11 Si 0.894 3.106 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.522 3.478 16 O -0.562 6.562 17 C -0.058 4.058 18 C 0.094 3.906 19 C -0.096 4.096 20 N -0.365 5.365 21 C 0.059 3.941 22 C -0.153 4.153 23 C -0.114 4.114 24 C -0.072 4.072 25 C 0.212 3.788 26 N -0.459 5.459 27 H 0.035 0.965 28 H 0.082 0.918 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.106 0.894 38 H 0.119 0.881 39 H 0.184 0.816 40 H 0.159 0.841 41 H 0.146 0.854 42 H 0.138 0.862 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.665 12.315 -9.621 15.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.030 4.030 4 C 0.001 3.999 5 N -0.322 5.322 6 C 0.120 3.880 7 C -0.578 4.578 8 H 0.077 0.923 9 C -0.137 4.137 10 N -0.527 5.527 11 Si 0.721 3.279 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.309 3.691 16 O -0.442 6.442 17 C -0.099 4.099 18 C -0.039 4.039 19 C -0.226 4.226 20 N -0.038 5.038 21 C -0.063 4.063 22 C -0.174 4.174 23 C -0.138 4.138 24 C -0.092 4.092 25 C -0.031 4.031 26 N -0.179 5.179 27 H 0.054 0.946 28 H 0.101 0.899 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.124 0.876 38 H 0.137 0.863 39 H 0.201 0.799 40 H 0.176 0.824 41 H 0.163 0.837 42 H 0.156 0.844 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.391 12.554 -9.259 15.661 hybrid contribution 1.657 -0.406 0.026 1.706 sum 0.265 12.148 -9.232 15.260 Atomic orbital electron populations 1.22670 0.82300 1.02291 0.99124 1.88049 1.18554 1.27521 1.95194 1.23033 0.95439 0.84835 0.99685 1.21271 0.90931 0.99415 0.88304 1.48114 1.64221 1.09842 1.10013 1.19456 0.97097 0.72899 0.98587 1.21529 0.97476 0.92330 1.46427 0.92302 1.24923 0.97331 0.96384 0.95083 1.69929 1.34304 1.01145 1.47359 0.86631 0.84635 0.77336 0.79248 1.20230 1.21244 1.20228 1.20122 0.77156 0.86690 0.85089 1.90619 1.54779 1.14569 1.84199 1.20046 1.05130 0.94577 0.90098 1.20435 0.89721 0.96318 0.97414 1.22439 1.03162 0.95871 1.01140 1.42815 1.12787 1.21653 1.26566 1.21571 0.96608 0.95873 0.92288 1.20704 0.97484 0.97284 1.01951 1.20934 0.93547 1.00589 0.98726 1.20257 1.01141 0.92681 0.95147 1.21051 0.82434 0.99776 0.99809 1.70690 1.30650 1.05738 1.10790 0.94639 0.89938 0.94842 0.93471 0.93271 0.89678 0.89710 0.93260 0.94773 0.92603 0.87582 0.86309 0.79906 0.82356 0.83657 0.84446 0.83519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.37 -7.05 9.53 -35.23 -0.34 -7.39 16 3 C 0.05 0.84 6.28 37.16 0.23 1.08 16 4 C 0.12 2.44 5.81 -4.04 -0.02 2.41 16 5 N -0.59 -13.04 2.42 -175.06 -0.42 -13.46 16 6 C 0.24 5.85 4.78 -5.19 -0.02 5.83 16 7 C -0.54 -14.08 9.28 -34.44 -0.32 -14.40 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -24.73 13.29 55.43 0.74 -23.99 16 11 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 C 0.52 11.57 7.66 -10.98 -0.08 11.49 16 16 O -0.56 -13.57 15.13 5.56 0.08 -13.49 16 17 C -0.06 -1.14 4.81 -29.03 -0.14 -1.28 16 18 C 0.09 1.80 5.85 -82.97 -0.49 1.32 16 19 C -0.10 -1.53 11.63 -16.43 -0.19 -1.72 16 20 N -0.37 -5.42 2.95 -62.66 -0.18 -5.61 16 21 C 0.06 0.62 10.95 -16.65 -0.18 0.44 16 22 C -0.15 -1.32 9.99 -39.91 -0.40 -1.72 16 23 C -0.11 -1.07 10.07 -39.53 -0.40 -1.47 16 24 C -0.07 -0.91 10.11 -39.36 -0.40 -1.31 16 25 C 0.21 3.56 7.81 -156.04 -1.22 2.34 16 26 N -0.46 -9.21 10.67 -9.01 -0.10 -9.31 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.66 8.07 -51.93 -0.42 1.24 16 33 H 0.08 1.61 7.42 -51.93 -0.39 1.22 16 34 H 0.05 1.31 7.11 -51.93 -0.37 0.94 16 35 H 0.03 0.86 6.44 -51.93 -0.33 0.52 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.11 2.04 7.40 -51.93 -0.38 1.66 16 38 H 0.12 2.28 7.96 -51.93 -0.41 1.86 16 39 H 0.18 2.34 8.06 -52.48 -0.42 1.91 16 40 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 41 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 367.87 15.07 5.54 5.54 Total: -1.00 -34.23 367.87 -8.39 -42.62 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.08 Total: 3.35 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -2.61 Total: 6.22 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.03 Total: -52.37 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.25 Total: -20.88 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.23 -8.39 -42.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.426 kcal (2) G-P(sol) polarization free energy of solvation -34.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds