Wall clock time and date at job start Tue Mar 31 2020 11:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42898 * 114.00063 * 2 1 4 4 C 1.53006 * 109.47039 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46935 * 64.99799 * 4 3 2 6 6 C 1.46495 * 120.00246 * 270.00008 * 5 4 3 7 7 C 1.50705 * 109.46920 * 269.99918 * 6 5 4 8 8 H 1.07996 * 120.00064 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99760 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99968 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99753 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46876 * 60.00207 * 11 9 7 13 13 H 1.48497 * 109.46948 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47210 * 299.99942 * 11 9 7 15 15 C 1.34780 * 119.99709 * 89.99888 * 5 4 3 16 16 O 1.21282 * 120.00308 * 0.02562 * 15 5 4 17 17 C 1.50702 * 119.99864 * 179.97438 * 15 5 4 18 18 C 1.50698 * 109.46990 * 180.02562 * 17 15 5 19 19 C 1.35108 * 125.68613 * 125.00185 * 18 17 15 20 20 N 1.36838 * 107.18141 * 180.02562 * 19 18 17 21 21 C 1.36482 * 132.57179 * 179.97438 * 20 19 18 22 22 C 1.34948 * 120.61123 * 179.97438 * 21 20 19 23 23 C 1.40477 * 120.29984 * 0.03985 * 22 21 20 24 24 C 1.36025 * 119.69114 * 359.97438 * 23 22 21 25 25 C 1.37081 * 106.99516 * 0.02562 * 20 19 18 26 26 N 1.32556 * 108.04019 * 359.97438 * 25 20 19 27 27 H 1.09006 * 109.46949 * 60.00140 * 1 2 3 28 28 H 1.09003 * 109.47296 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47829 * 300.00149 * 1 2 3 30 30 H 1.08999 * 109.47456 * 59.99883 * 3 2 1 31 31 H 1.08998 * 109.47445 * 299.99532 * 3 2 1 32 32 H 1.09003 * 109.46981 * 304.99749 * 4 3 2 33 33 H 1.08996 * 109.46840 * 184.99891 * 4 3 2 34 34 H 1.08994 * 109.47486 * 29.99810 * 6 5 4 35 35 H 1.08995 * 109.47359 * 150.00430 * 6 5 4 36 36 H 0.97006 * 119.99914 * 179.97438 * 10 9 7 37 37 H 1.08999 * 109.46706 * 60.00311 * 17 15 5 38 38 H 1.09004 * 109.47466 * 300.00276 * 17 15 5 39 39 H 1.08005 * 126.41030 * 0.02562 * 19 18 17 40 40 H 1.08003 * 119.69297 * 0.03648 * 21 20 19 41 41 H 1.07998 * 119.85026 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.15010 * 180.25917 * 23 22 21 43 43 H 1.08000 * 120.33361 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5638 -1.2508 6 6 4.1061 -0.8926 -1.3403 7 6 5.5016 -1.2982 -0.9412 8 1 6.2202 -0.5462 -0.6505 9 6 5.8609 -2.6294 -0.9472 10 7 4.9860 -3.5450 -1.3017 11 14 7.5905 -3.1322 -0.4519 12 1 7.8522 -2.6963 0.9434 13 1 7.7219 -4.6086 -0.5426 14 1 8.5724 -2.4915 -1.3632 15 6 4.2632 1.3328 -2.3200 16 8 4.1564 2.5386 -2.2459 17 6 4.7176 0.6943 -3.6072 18 6 4.9713 1.7651 -4.6369 19 6 6.1224 1.9435 -5.3213 20 7 5.9380 3.0169 -6.1497 21 6 6.7519 3.6365 -7.0532 22 6 6.3127 4.7009 -7.7569 23 6 5.0083 5.1866 -7.5672 24 6 4.1867 4.5785 -6.6697 25 6 4.6604 3.4684 -5.9421 26 7 4.0963 2.6962 -5.0241 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3635 0.5138 0.8899 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8507 0.5685 0.8428 33 1 3.9784 2.1764 0.0902 34 1 3.3857 -1.3633 -0.6713 35 1 3.9138 -1.2123 -2.3644 36 1 5.2389 -4.4815 -1.3063 37 1 3.9442 0.0172 -3.9697 38 1 5.6366 0.1352 -3.4310 39 1 7.0202 1.3499 -5.2315 40 1 7.7565 3.2710 -7.2071 41 1 6.9670 5.1817 -8.4690 42 1 4.6578 6.0361 -8.1347 43 1 3.1818 4.9431 -6.5159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609136870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:10 Heat of formation + Delta-G solvation = -7.079156 kcal Electronic energy + Delta-G solvation = -26290.057501 eV Core-core repulsion = 22529.290462 eV Total energy + Delta-G solvation = -3760.767039 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.70641 -40.75263 -38.78112 -38.20678 -36.54406 -34.59495 -34.49208 -33.09187 -31.28569 -30.08393 -28.98136 -28.46172 -27.04490 -24.80782 -24.46096 -23.72800 -23.57209 -21.76422 -19.86623 -18.74383 -18.43854 -18.10953 -17.63804 -17.42003 -17.08583 -16.70746 -16.65972 -16.36752 -16.08006 -15.95165 -15.53934 -15.29708 -14.93153 -14.42275 -14.26900 -13.86980 -13.57363 -13.50796 -13.25420 -13.07085 -12.95643 -12.75967 -12.69369 -12.57012 -12.54983 -12.39592 -12.09672 -11.94204 -11.89695 -11.65060 -11.00513 -10.75023 -10.60498 -10.44697 -9.61370 -9.38733 -8.76683 -8.12583 -6.28047 -0.09317 0.38505 1.46261 1.47362 1.55295 1.69943 1.81305 1.87596 2.37543 2.51580 2.67290 2.93730 3.16794 3.27272 3.53479 3.84705 3.96386 4.02863 4.14588 4.24159 4.25785 4.33190 4.35326 4.41022 4.52426 4.54362 4.58734 4.62397 4.68655 4.82916 4.88270 4.90929 4.98471 5.07241 5.18489 5.30832 5.37177 5.61730 5.66727 5.73684 5.92748 6.14293 6.22689 6.27996 6.64525 6.88228 6.99363 7.37124 7.48467 8.92894 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010954 B = 0.004031 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.474786 B = 6945.350563 C = 8964.615953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.057 3.943 4 C 0.119 3.881 5 N -0.594 5.594 6 C 0.260 3.740 7 C -0.548 4.548 8 H 0.054 0.946 9 C 0.022 3.978 10 N -0.920 5.920 11 Si 0.958 3.042 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.267 1.267 15 C 0.518 3.482 16 O -0.583 6.583 17 C -0.048 4.048 18 C 0.056 3.944 19 C -0.097 4.097 20 N -0.369 5.369 21 C 0.041 3.959 22 C -0.139 4.139 23 C -0.081 4.081 24 C -0.114 4.114 25 C 0.197 3.803 26 N -0.520 5.520 27 H 0.038 0.962 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.026 0.974 35 H 0.022 0.978 36 H 0.267 0.733 37 H 0.098 0.902 38 H 0.119 0.881 39 H 0.210 0.790 40 H 0.194 0.806 41 H 0.195 0.805 42 H 0.180 0.820 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.239 14.083 -11.251 18.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C -0.021 4.021 4 C -0.005 4.005 5 N -0.324 5.324 6 C 0.139 3.861 7 C -0.586 4.586 8 H 0.073 0.927 9 C -0.179 4.179 10 N -0.559 5.559 11 Si 0.783 3.217 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.192 1.192 15 C 0.307 3.693 16 O -0.464 6.464 17 C -0.088 4.088 18 C -0.077 4.077 19 C -0.228 4.228 20 N -0.041 5.041 21 C -0.080 4.080 22 C -0.160 4.160 23 C -0.105 4.105 24 C -0.134 4.134 25 C -0.047 4.047 26 N -0.240 5.240 27 H 0.057 0.943 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.044 0.956 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.137 0.863 39 H 0.227 0.773 40 H 0.211 0.789 41 H 0.212 0.788 42 H 0.197 0.803 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.513 14.336 -10.890 18.011 hybrid contribution 1.045 -0.789 0.387 1.365 sum 1.558 13.548 -10.503 17.213 Atomic orbital electron populations 1.22875 0.80047 1.03395 1.00523 1.87997 1.21144 1.28164 1.95453 1.22909 0.93853 0.84740 1.00549 1.21438 0.92693 0.99221 0.87115 1.48126 1.64315 1.08961 1.11045 1.19029 0.95914 0.74086 0.97025 1.21690 0.97904 0.92556 1.46472 0.92738 1.25671 1.01088 0.96249 0.94846 1.70041 1.36222 1.01484 1.48166 0.85614 0.80094 0.77037 0.78951 1.19976 1.20820 1.19157 1.20525 0.76641 0.86469 0.85692 1.90585 1.55776 1.15450 1.84632 1.19879 1.04554 0.94921 0.89469 1.20368 0.91418 0.97087 0.98794 1.22672 1.02908 0.96407 1.00790 1.42975 1.12767 1.21333 1.26983 1.22447 0.97748 0.96359 0.91446 1.21390 0.97521 0.95866 1.01185 1.21540 0.93075 0.99892 0.95952 1.20545 1.02580 0.93090 0.97202 1.21573 0.83343 1.00254 0.99487 1.70531 1.32485 1.07547 1.13458 0.94292 0.89087 0.92286 0.90013 0.94757 0.89965 0.89305 0.95616 0.96051 0.92427 0.88399 0.86318 0.77344 0.78894 0.78844 0.80265 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.03 16 2 O -0.41 -15.69 9.53 -148.98 -1.42 -17.11 16 3 C 0.06 2.04 6.28 71.98 0.45 2.49 16 4 C 0.12 4.78 5.81 86.38 0.50 5.28 16 5 N -0.59 -27.48 2.42 -826.16 -2.00 -29.48 16 6 C 0.26 13.33 4.78 85.64 0.41 13.74 16 7 C -0.55 -29.31 9.28 25.60 0.24 -29.08 16 8 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 9 C 0.02 1.16 5.46 84.66 0.46 1.63 16 10 N -0.92 -52.07 13.29 21.45 0.28 -51.78 16 11 Si 0.96 42.09 29.54 68.60 2.03 44.11 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 14 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 15 C 0.52 24.26 7.66 87.66 0.67 24.93 16 16 O -0.58 -29.58 15.13 -3.03 -0.05 -29.63 16 17 C -0.05 -2.02 4.81 29.10 0.14 -1.88 16 18 C 0.06 2.24 5.85 41.58 0.24 2.49 16 19 C -0.10 -3.14 11.63 83.19 0.97 -2.17 16 20 N -0.37 -10.64 2.95 -352.15 -1.04 -11.68 16 21 C 0.04 0.73 10.95 83.21 0.91 1.64 16 22 C -0.14 -1.71 9.99 22.06 0.22 -1.49 16 23 C -0.08 -1.20 10.07 22.30 0.22 -0.97 16 24 C -0.11 -2.79 10.11 22.42 0.23 -2.57 16 25 C 0.20 6.73 7.81 134.11 1.05 7.77 16 26 N -0.52 -22.07 10.67 -182.40 -1.95 -24.01 16 27 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 2.33 8.14 -2.39 -0.02 2.32 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 3.32 8.07 -2.39 -0.02 3.30 16 33 H 0.09 3.47 7.42 -2.39 -0.02 3.45 16 34 H 0.03 1.44 7.11 -2.39 -0.02 1.42 16 35 H 0.02 1.14 6.44 -2.39 -0.02 1.13 16 36 H 0.27 14.29 8.31 -92.70 -0.77 13.52 16 37 H 0.10 4.14 7.40 -2.39 -0.02 4.12 16 38 H 0.12 4.84 7.96 -2.38 -0.02 4.83 16 39 H 0.21 5.24 8.06 -2.91 -0.02 5.21 16 40 H 0.19 1.93 8.06 -2.91 -0.02 1.91 16 41 H 0.19 0.58 8.06 -2.91 -0.02 0.56 16 42 H 0.18 1.16 8.06 -2.91 -0.02 1.13 16 43 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -78.59 367.87 4.84 -73.75 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 1.01 Total: 21.98 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: 7.96 Total: 23.85 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -4.70 Total: -116.95 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -1.47 Total: -46.74 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Total: -78.59 4.84 -73.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.675 kcal (2) G-P(sol) polarization free energy of solvation -78.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds