Wall clock time and date at job start Tue Mar 31 2020 11:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00001 * 2 1 4 4 C 1.52996 * 109.46925 * 184.72914 * 3 2 1 5 5 N 1.46902 * 109.47307 * 69.41045 * 4 3 2 6 6 C 1.46901 * 110.99947 * 286.21693 * 5 4 3 7 7 C 1.50708 * 109.47083 * 302.85796 * 6 5 4 8 8 H 1.08001 * 119.99841 * 4.35543 * 7 6 5 9 9 C 1.37871 * 119.99997 * 184.35592 * 7 6 5 10 10 N 1.31517 * 120.00133 * 354.85643 * 9 7 6 11 11 Si 1.86801 * 119.99891 * 174.85765 * 9 7 6 12 12 H 1.48499 * 109.47206 * 94.99396 * 11 9 7 13 13 H 1.48498 * 109.47061 * 214.99288 * 11 9 7 14 14 H 1.48497 * 109.46956 * 334.99256 * 11 9 7 15 15 C 1.46895 * 111.00172 * 162.26405 * 5 4 3 16 16 C 1.50705 * 109.47201 * 189.99956 * 15 5 4 17 17 N 1.30974 * 126.43742 * 90.25201 * 16 15 5 18 18 C 1.35223 * 105.57715 * 180.12503 * 17 16 15 19 19 C 1.48420 * 126.41129 * 179.90951 * 18 17 16 20 20 C 1.39329 * 120.11552 * 179.71044 * 19 18 17 21 21 C 1.38026 * 119.87713 * 179.97438 * 20 19 18 22 22 C 1.38319 * 120.11990 * 359.97438 * 21 20 19 23 23 C 1.38324 * 120.24073 * 0.02562 * 22 21 20 24 24 C 1.38017 * 120.12270 * 359.97438 * 23 22 21 25 25 N 1.30756 * 107.17090 * 359.63819 * 18 17 16 26 26 O 1.21294 * 110.10061 * 0.22820 * 25 18 17 27 27 H 1.09005 * 109.47211 * 64.94229 * 1 2 3 28 28 H 1.08992 * 109.47145 * 184.93888 * 1 2 3 29 29 H 1.09000 * 109.47031 * 304.94869 * 1 2 3 30 30 H 1.08998 * 109.47298 * 64.72776 * 3 2 1 31 31 H 1.08997 * 109.47197 * 304.72799 * 3 2 1 32 32 H 1.09000 * 109.47368 * 309.41092 * 4 3 2 33 33 H 1.09006 * 109.47134 * 189.40769 * 4 3 2 34 34 H 1.09001 * 109.47142 * 62.85760 * 6 5 4 35 35 H 1.09000 * 109.47102 * 182.85943 * 6 5 4 36 36 H 0.96997 * 120.00033 * 179.97438 * 10 9 7 37 37 H 1.08999 * 109.47792 * 69.99768 * 15 5 4 38 38 H 1.09000 * 109.47423 * 309.99820 * 15 5 4 39 39 H 1.07998 * 120.06349 * 359.97438 * 20 19 18 40 40 H 1.07997 * 119.94266 * 180.02562 * 21 20 19 41 41 H 1.08002 * 119.88111 * 179.72139 * 22 21 20 42 42 H 1.08008 * 119.93756 * 179.97438 * 23 22 21 43 43 H 1.07994 * 120.06366 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5309 1.1866 -0.1189 5 7 3.8811 0.7067 -1.4625 6 6 3.5712 -0.7218 -1.6086 7 6 4.3016 -1.5052 -0.5483 8 1 4.8763 -0.9878 0.2056 9 6 4.2361 -2.8824 -0.5410 10 7 3.4565 -3.5082 -1.3954 11 14 5.2548 -3.8592 0.6828 12 1 4.4304 -4.1671 1.8789 13 1 5.7048 -5.1262 0.0523 14 1 6.4390 -3.0610 1.0898 15 6 5.2937 0.9726 -1.7649 16 6 5.5560 0.6961 -3.2230 17 7 5.4579 1.5545 -4.2074 18 6 5.7817 0.8645 -5.3244 19 6 5.8182 1.3970 -6.7093 20 6 6.1780 0.5664 -7.7684 21 6 6.2099 1.0666 -9.0545 22 6 5.8849 2.3898 -9.2928 23 6 5.5270 3.2188 -8.2449 24 6 5.4918 2.7291 -6.9551 25 7 6.0623 -0.3581 -4.9552 26 8 5.9374 -0.4698 -3.7539 27 1 -0.3634 0.4353 -0.9310 28 1 -0.3633 -1.0238 0.0885 29 1 -0.3633 0.5887 0.8423 30 1 1.7572 1.8159 0.9293 31 1 1.6232 1.8755 -0.8446 32 1 3.8997 0.4817 0.6262 33 1 3.9859 2.1630 0.0481 34 1 2.4976 -0.8739 -1.4978 35 1 3.8868 -1.0630 -2.5945 36 1 3.4108 -4.4771 -1.3905 37 1 5.9241 0.3268 -1.1536 38 1 5.5221 2.0157 -1.5461 39 1 6.4316 -0.4670 -7.5835 40 1 6.4882 0.4236 -9.8763 41 1 5.9155 2.7784 -10.3000 42 1 5.2746 4.2514 -8.4365 43 1 5.2119 3.3771 -6.1378 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610392331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:47 Heat of formation + Delta-G solvation = 64.053143 kcal Electronic energy + Delta-G solvation = -26325.478620 eV Core-core repulsion = 22567.796109 eV Total energy + Delta-G solvation = -3757.682511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.01211 -39.15466 -37.92596 -36.27887 -35.32369 -32.85401 -32.28884 -31.05367 -30.58019 -29.31911 -27.52802 -25.98625 -24.84727 -24.45800 -23.23978 -22.57027 -21.99491 -20.77727 -19.84204 -17.64324 -17.58941 -16.59519 -16.29558 -15.91158 -15.63429 -15.51821 -15.05344 -14.72311 -14.28171 -14.04898 -13.95350 -13.84052 -13.51296 -13.29299 -13.11639 -12.64420 -12.29929 -11.90688 -11.49577 -11.46466 -11.37983 -11.23585 -11.17942 -11.11998 -10.92581 -10.79947 -10.65485 -10.57366 -10.12443 -10.00329 -9.79523 -9.57792 -9.05862 -8.95581 -8.59725 -8.27962 -7.35349 -5.93705 -3.99310 0.81608 1.29829 1.77191 2.75057 3.33042 3.35602 3.40744 3.41469 3.77439 3.83258 4.33226 4.45343 4.48499 4.83622 4.87903 4.93781 4.99448 5.28125 5.35236 5.39106 5.53518 5.59335 5.66749 5.72900 5.79802 5.82634 5.89354 5.93000 5.94457 6.01451 6.11427 6.15945 6.22537 6.28243 6.36311 6.47207 6.50709 6.64966 6.81825 7.13583 7.63752 7.83647 7.89710 8.01524 8.17947 8.33607 8.62060 9.05704 9.64822 11.13376 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.003638 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.472652 B = 7694.887707 C = 8854.034404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.354 6.354 3 C 0.072 3.928 4 C 0.058 3.942 5 N -0.535 5.535 6 C 0.177 3.823 7 C -0.541 4.541 8 H 0.056 0.944 9 C 0.072 3.928 10 N -0.885 5.885 11 Si 0.883 3.117 12 H -0.283 1.283 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.143 3.857 16 C 0.225 3.775 17 N -0.479 5.479 18 C 0.192 3.808 19 C -0.007 4.007 20 C -0.088 4.088 21 C -0.124 4.124 22 C -0.110 4.110 23 C -0.125 4.125 24 C -0.078 4.078 25 N -0.380 5.380 26 O 0.100 5.900 27 H 0.032 0.968 28 H 0.080 0.920 29 H 0.028 0.972 30 H 0.040 0.960 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.022 0.978 36 H 0.260 0.740 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.128 0.872 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.898 13.142 -7.483 15.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C -0.006 4.006 4 C -0.069 4.069 5 N -0.261 5.261 6 C 0.053 3.947 7 C -0.580 4.580 8 H 0.074 0.926 9 C -0.131 4.131 10 N -0.523 5.523 11 Si 0.711 3.289 12 H -0.209 1.209 13 H -0.213 1.213 14 H -0.200 1.200 15 C 0.013 3.987 16 C 0.005 3.995 17 N -0.213 5.213 18 C -0.078 4.078 19 C -0.009 4.009 20 C -0.107 4.107 21 C -0.142 4.142 22 C -0.129 4.129 23 C -0.143 4.143 24 C -0.098 4.098 25 N -0.086 5.086 26 O 0.039 5.961 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.834 12.799 -8.605 15.531 hybrid contribution 0.664 -1.070 1.400 1.883 sum 2.498 11.729 -7.205 13.990 Atomic orbital electron populations 1.22634 0.83140 1.02074 0.98635 1.88312 1.17671 1.26448 1.94780 1.22437 0.94172 0.85439 0.98534 1.22024 0.93908 0.99417 0.91597 1.62673 1.13996 1.23234 1.26177 1.20097 0.99410 0.79146 0.96092 1.21500 1.31228 0.91833 1.13441 0.92599 1.24839 0.95054 0.97783 0.95448 1.69955 1.37335 1.08507 1.36514 0.86733 0.80675 0.79970 0.81496 1.20880 1.21282 1.19983 1.20482 0.94173 1.01928 0.82100 1.28653 0.92182 0.79531 0.99146 1.71934 1.21287 1.31011 0.97112 1.23840 1.01512 0.87150 0.95325 1.17398 1.02730 0.94087 0.86672 1.21236 0.97665 0.99942 0.91901 1.21061 1.00893 0.95857 0.96349 1.21281 0.98497 0.93902 0.99177 1.21099 1.00792 1.00116 0.92285 1.21246 0.96953 0.94034 0.97559 1.74859 1.20993 1.19438 0.93268 1.85411 1.61114 1.35313 1.14292 0.94897 0.90177 0.95310 0.94170 0.93489 0.91314 0.91337 0.91709 0.96000 0.93043 0.89967 0.88194 0.85161 0.85481 0.85793 0.85439 0.84632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.08 7.96 -35.23 -0.28 -7.36 16 3 C 0.07 1.19 6.20 37.16 0.23 1.42 16 4 C 0.06 1.01 5.32 -3.82 -0.02 0.99 16 5 N -0.53 -10.74 4.65 -237.51 -1.10 -11.84 16 6 C 0.18 4.43 4.57 -4.97 -0.02 4.41 16 7 C -0.54 -14.20 7.35 -34.44 -0.25 -14.45 16 8 H 0.06 1.41 5.95 -52.49 -0.31 1.10 16 9 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 10 N -0.88 -26.08 13.29 55.43 0.74 -25.34 16 11 Si 0.88 21.27 29.54 -169.99 -5.02 16.25 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 15 C 0.14 2.56 5.44 -4.98 -0.03 2.53 16 16 C 0.23 4.43 7.06 -12.99 -0.09 4.34 16 17 N -0.48 -9.13 11.26 -9.88 -0.11 -9.24 16 18 C 0.19 3.62 7.80 -156.12 -1.22 2.40 16 19 C -0.01 -0.11 5.88 -104.89 -0.62 -0.73 16 20 C -0.09 -1.21 9.69 -39.25 -0.38 -1.59 16 21 C -0.12 -1.34 10.03 -39.63 -0.40 -1.74 16 22 C -0.11 -1.07 10.04 -39.52 -0.40 -1.46 16 23 C -0.12 -1.31 10.03 -39.63 -0.40 -1.70 16 24 C -0.08 -1.04 9.70 -39.26 -0.38 -1.42 16 25 N -0.38 -7.86 11.86 30.97 0.37 -7.49 16 26 O 0.10 2.17 10.52 18.05 0.19 2.36 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.34 5.86 -51.93 -0.30 1.03 16 33 H 0.07 0.94 7.77 -51.93 -0.40 0.54 16 34 H 0.07 1.78 5.71 -51.93 -0.30 1.49 16 35 H 0.02 0.61 6.50 -51.93 -0.34 0.28 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.08 1.51 6.86 -51.93 -0.36 1.15 16 38 H 0.10 1.44 7.84 -51.93 -0.41 1.04 16 39 H 0.13 1.82 7.87 -52.49 -0.41 1.41 16 40 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 41 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 43 H 0.14 1.77 7.88 -52.49 -0.41 1.35 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -31.92 361.42 -8.49 -40.42 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.76 Total: 0.30 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -2.96 Total: -3.50 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.11 Total: -53.91 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.09 Total: -5.00 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.92 -8.49 -40.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610392331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.471 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds