Wall clock time and date at job start Tue Mar 31 2020 11:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00001 * 2 1 4 4 C 1.52996 * 109.46925 * 184.72914 * 3 2 1 5 5 N 1.46902 * 109.47307 * 69.41045 * 4 3 2 6 6 C 1.46901 * 110.99947 * 286.21693 * 5 4 3 7 7 C 1.50708 * 109.47083 * 302.85796 * 6 5 4 8 8 H 1.08001 * 119.99841 * 4.35543 * 7 6 5 9 9 C 1.37871 * 119.99997 * 184.35592 * 7 6 5 10 10 N 1.31517 * 120.00133 * 354.85643 * 9 7 6 11 11 Si 1.86801 * 119.99891 * 174.85765 * 9 7 6 12 12 H 1.48499 * 109.47206 * 94.99396 * 11 9 7 13 13 H 1.48498 * 109.47061 * 214.99288 * 11 9 7 14 14 H 1.48497 * 109.46956 * 334.99256 * 11 9 7 15 15 C 1.46895 * 111.00172 * 162.26405 * 5 4 3 16 16 C 1.50705 * 109.47201 * 189.99956 * 15 5 4 17 17 N 1.30974 * 126.43742 * 90.25201 * 16 15 5 18 18 C 1.35223 * 105.57715 * 180.12503 * 17 16 15 19 19 C 1.48420 * 126.41129 * 179.90951 * 18 17 16 20 20 C 1.39329 * 120.11552 * 179.71044 * 19 18 17 21 21 C 1.38026 * 119.87713 * 179.97438 * 20 19 18 22 22 C 1.38319 * 120.11990 * 359.97438 * 21 20 19 23 23 C 1.38324 * 120.24073 * 0.02562 * 22 21 20 24 24 C 1.38017 * 120.12270 * 359.97438 * 23 22 21 25 25 N 1.30756 * 107.17090 * 359.63819 * 18 17 16 26 26 O 1.21294 * 110.10061 * 0.22820 * 25 18 17 27 27 H 1.09005 * 109.47211 * 64.94229 * 1 2 3 28 28 H 1.08992 * 109.47145 * 184.93888 * 1 2 3 29 29 H 1.09000 * 109.47031 * 304.94869 * 1 2 3 30 30 H 1.08998 * 109.47298 * 64.72776 * 3 2 1 31 31 H 1.08997 * 109.47197 * 304.72799 * 3 2 1 32 32 H 1.09000 * 109.47368 * 309.41092 * 4 3 2 33 33 H 1.09006 * 109.47134 * 189.40769 * 4 3 2 34 34 H 1.09001 * 109.47142 * 62.85760 * 6 5 4 35 35 H 1.09000 * 109.47102 * 182.85943 * 6 5 4 36 36 H 0.96997 * 120.00033 * 179.97438 * 10 9 7 37 37 H 1.08999 * 109.47792 * 69.99768 * 15 5 4 38 38 H 1.09000 * 109.47423 * 309.99820 * 15 5 4 39 39 H 1.07998 * 120.06349 * 359.97438 * 20 19 18 40 40 H 1.07997 * 119.94266 * 180.02562 * 21 20 19 41 41 H 1.08002 * 119.88111 * 179.72139 * 22 21 20 42 42 H 1.08008 * 119.93756 * 179.97438 * 23 22 21 43 43 H 1.07994 * 120.06366 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5309 1.1866 -0.1189 5 7 3.8811 0.7067 -1.4625 6 6 3.5712 -0.7218 -1.6086 7 6 4.3016 -1.5052 -0.5483 8 1 4.8763 -0.9878 0.2056 9 6 4.2361 -2.8824 -0.5410 10 7 3.4565 -3.5082 -1.3954 11 14 5.2548 -3.8592 0.6828 12 1 4.4304 -4.1671 1.8789 13 1 5.7048 -5.1262 0.0523 14 1 6.4390 -3.0610 1.0898 15 6 5.2937 0.9726 -1.7649 16 6 5.5560 0.6961 -3.2230 17 7 5.4579 1.5545 -4.2074 18 6 5.7817 0.8645 -5.3244 19 6 5.8182 1.3970 -6.7093 20 6 6.1780 0.5664 -7.7684 21 6 6.2099 1.0666 -9.0545 22 6 5.8849 2.3898 -9.2928 23 6 5.5270 3.2188 -8.2449 24 6 5.4918 2.7291 -6.9551 25 7 6.0623 -0.3581 -4.9552 26 8 5.9374 -0.4698 -3.7539 27 1 -0.3634 0.4353 -0.9310 28 1 -0.3633 -1.0238 0.0885 29 1 -0.3633 0.5887 0.8423 30 1 1.7572 1.8159 0.9293 31 1 1.6232 1.8755 -0.8446 32 1 3.8997 0.4817 0.6262 33 1 3.9859 2.1630 0.0481 34 1 2.4976 -0.8739 -1.4978 35 1 3.8868 -1.0630 -2.5945 36 1 3.4108 -4.4771 -1.3905 37 1 5.9241 0.3268 -1.1536 38 1 5.5221 2.0157 -1.5461 39 1 6.4316 -0.4670 -7.5835 40 1 6.4882 0.4236 -9.8763 41 1 5.9155 2.7784 -10.3000 42 1 5.2746 4.2514 -8.4365 43 1 5.2119 3.3771 -6.1378 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610392331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:47 Heat of formation + Delta-G solvation = 41.436688 kcal Electronic energy + Delta-G solvation = -26326.459343 eV Core-core repulsion = 22567.796109 eV Total energy + Delta-G solvation = -3758.663234 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.51956 -40.10901 -39.42903 -37.78007 -36.76898 -34.61385 -33.97992 -31.97830 -31.70900 -30.74020 -29.38077 -27.35433 -26.51142 -25.75046 -24.78768 -23.86836 -23.10832 -22.07557 -21.44310 -19.15394 -18.99500 -18.35241 -17.54644 -17.34159 -17.11431 -16.69953 -16.55624 -16.07412 -15.63978 -15.60541 -15.45061 -15.01022 -14.61389 -14.40074 -14.35085 -14.18458 -13.97391 -13.37622 -13.01614 -12.89496 -12.77482 -12.70186 -12.60619 -12.43127 -12.35862 -12.33127 -12.25408 -11.94271 -11.90681 -11.60912 -11.55766 -11.28456 -10.54704 -10.19468 -9.97255 -9.70385 -9.06856 -8.03925 -6.16749 -0.33214 0.33712 0.39003 1.40944 1.42220 1.43169 1.51082 1.88766 2.45589 2.47409 2.83576 2.96907 3.17632 3.25932 3.40275 3.84310 4.01100 4.02600 4.21208 4.27851 4.37717 4.43895 4.49489 4.52676 4.55142 4.58361 4.64039 4.72706 4.74035 4.80873 4.85205 4.92817 4.97573 5.06349 5.22150 5.28951 5.44472 5.47439 5.49864 5.59800 5.94479 5.94581 6.05378 6.25125 6.40833 6.61755 6.99774 7.10178 7.51289 9.01589 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.003638 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.472652 B = 7694.887707 C = 8854.034404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.400 6.400 3 C 0.068 3.932 4 C 0.056 3.944 5 N -0.537 5.537 6 C 0.199 3.801 7 C -0.533 4.533 8 H 0.067 0.933 9 C 0.014 3.986 10 N -0.928 5.928 11 Si 0.946 3.054 12 H -0.278 1.278 13 H -0.292 1.292 14 H -0.260 1.260 15 C 0.145 3.855 16 C 0.219 3.781 17 N -0.481 5.481 18 C 0.200 3.800 19 C -0.048 4.048 20 C -0.103 4.103 21 C -0.121 4.121 22 C -0.093 4.093 23 C -0.118 4.118 24 C -0.086 4.086 25 N -0.409 5.409 26 O 0.062 5.938 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.115 0.885 34 H 0.037 0.963 35 H -0.018 1.018 36 H 0.257 0.743 37 H 0.077 0.923 38 H 0.144 0.856 39 H 0.115 0.885 40 H 0.156 0.844 41 H 0.166 0.834 42 H 0.162 0.838 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.458 16.112 -8.128 18.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.320 6.320 3 C -0.008 4.008 4 C -0.071 4.071 5 N -0.263 5.263 6 C 0.073 3.927 7 C -0.572 4.572 8 H 0.085 0.915 9 C -0.185 4.185 10 N -0.569 5.569 11 Si 0.772 3.228 12 H -0.204 1.204 13 H -0.218 1.218 14 H -0.184 1.184 15 C 0.015 3.985 16 C -0.001 4.001 17 N -0.215 5.215 18 C -0.070 4.070 19 C -0.050 4.050 20 C -0.124 4.124 21 C -0.139 4.139 22 C -0.112 4.112 23 C -0.136 4.136 24 C -0.106 4.106 25 N -0.120 5.120 26 O 0.008 5.992 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.133 0.867 34 H 0.055 0.945 35 H 0.000 1.000 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.161 0.839 39 H 0.134 0.866 40 H 0.173 0.827 41 H 0.183 0.817 42 H 0.180 0.820 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.397 15.789 -9.189 18.424 hybrid contribution 0.457 -1.830 1.446 2.376 sum 2.854 13.959 -7.743 16.215 Atomic orbital electron populations 1.22729 0.81441 1.02251 1.00193 1.88237 1.19847 1.28739 1.95126 1.22613 0.93402 0.84467 1.00353 1.22228 0.94964 1.00923 0.88976 1.62546 1.15563 1.19842 1.28334 1.19594 0.97393 0.82132 0.93621 1.21828 1.30146 0.91950 1.13231 0.91509 1.25674 0.96273 0.99221 0.97329 1.70109 1.39479 1.08479 1.38793 0.85725 0.79558 0.78317 0.79166 1.20430 1.21823 1.18398 1.20714 0.92637 1.04252 0.80884 1.29138 0.91755 0.79159 1.00074 1.71934 1.21556 1.30891 0.97120 1.24553 0.99212 0.86534 0.96746 1.17645 1.06246 0.95725 0.85373 1.21303 0.98586 0.99370 0.93100 1.21424 0.99824 0.97067 0.95540 1.21799 0.95545 0.92950 1.00892 1.21514 0.99275 1.01838 0.90967 1.21362 0.97208 0.92901 0.99125 1.74837 1.23377 1.20741 0.93030 1.85361 1.62384 1.36486 1.14977 0.94386 0.91097 0.92273 0.90761 0.93190 0.93456 0.86732 0.94477 0.99994 0.93397 0.90546 0.83854 0.86640 0.82659 0.81656 0.82005 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 11.01 113.37 1.25 2.19 16 2 O -0.40 -16.09 7.96 -148.98 -1.19 -17.27 16 3 C 0.07 2.16 6.20 71.98 0.45 2.60 16 4 C 0.06 1.85 5.32 86.30 0.46 2.31 16 5 N -0.54 -21.56 4.65 -905.35 -4.21 -25.77 16 6 C 0.20 10.34 4.57 85.56 0.39 10.73 16 7 C -0.53 -28.59 7.35 25.60 0.19 -28.40 16 8 H 0.07 3.37 5.95 -2.91 -0.02 3.36 16 9 C 0.01 0.78 5.45 84.65 0.46 1.24 16 10 N -0.93 -57.18 13.29 21.45 0.29 -56.89 16 11 Si 0.95 44.54 29.54 68.60 2.03 46.57 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 14 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 15 C 0.14 5.11 5.44 85.56 0.47 5.57 16 16 C 0.22 8.92 7.06 88.36 0.62 9.54 16 17 N -0.48 -18.76 11.26 -302.51 -3.41 -22.17 16 18 C 0.20 7.88 7.80 137.30 1.07 8.95 16 19 C -0.05 -1.53 5.88 -20.04 -0.12 -1.65 16 20 C -0.10 -2.87 9.69 22.48 0.22 -2.66 16 21 C -0.12 -2.32 10.03 22.24 0.22 -2.09 16 22 C -0.09 -1.42 10.04 22.31 0.22 -1.20 16 23 C -0.12 -2.07 10.03 22.24 0.22 -1.85 16 24 C -0.09 -2.19 9.70 22.48 0.22 -1.97 16 25 N -0.41 -18.06 11.86 -59.14 -0.70 -18.76 16 26 O 0.06 2.89 10.52 74.64 0.79 3.68 16 27 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.78 5.86 -2.39 -0.01 1.77 16 33 H 0.11 2.71 7.77 -2.38 -0.02 2.69 16 34 H 0.04 2.15 5.71 -2.39 -0.01 2.14 16 35 H -0.02 -1.08 6.50 -2.39 -0.02 -1.09 16 36 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.08 2.80 6.86 -2.39 -0.02 2.78 16 38 H 0.14 3.77 7.84 -2.39 -0.02 3.75 16 39 H 0.12 3.44 7.87 -2.91 -0.02 3.42 16 40 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 41 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 43 H 0.13 3.36 7.88 -2.91 -0.02 3.33 16 Total: -1.00 -74.78 361.42 0.97 -73.82 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 1.02 Total: 13.48 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 6.34 Total: 3.32 kcal Atomic # 7 Polarization: -115.56 SS G_CDS: -8.03 Total: -123.59 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.40 Total: -13.59 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -74.78 0.97 -73.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610392331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.254 kcal (2) G-P(sol) polarization free energy of solvation -74.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds