Wall clock time and date at job start Tue Mar 31 2020 11:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00327 * 2 1 4 4 C 1.53000 * 109.47377 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46866 * 65.00314 * 4 3 2 6 6 C 1.46504 * 119.99721 * 269.99645 * 5 4 3 7 7 C 1.52998 * 109.47202 * 270.00073 * 6 5 4 8 8 C 1.47198 * 109.47181 * 180.02562 * 7 6 5 9 9 N 5.92362 * 136.88737 * 195.71733 * 2 1 3 10 10 C 1.34771 * 120.00078 * 89.99911 * 5 4 3 11 11 O 1.21583 * 120.00050 * 0.02562 * 10 5 4 12 12 N 1.34770 * 120.00397 * 179.97438 * 10 5 4 13 13 C 1.39243 * 120.00651 * 184.27668 * 12 10 5 14 14 C 1.39477 * 119.83319 * 324.72926 * 13 12 10 15 15 C 1.36372 * 120.17329 * 180.24990 * 14 13 12 16 16 C 1.40872 * 119.82165 * 359.49827 * 15 14 13 17 17 C 1.41162 * 120.16531 * 180.23089 * 16 15 14 18 18 H 1.07991 * 120.00369 * 215.05623 * 17 16 15 19 19 C 1.39900 * 119.99759 * 35.04605 * 17 16 15 20 20 N 1.30877 * 119.99821 * 355.52225 * 19 17 16 21 21 Si 1.86794 * 119.99987 * 175.52142 * 19 17 16 22 22 H 1.48503 * 109.47132 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47313 * 120.00127 * 21 19 17 24 24 H 1.48498 * 109.47131 * 240.00351 * 21 19 17 25 25 C 1.40863 * 119.67338 * 0.51997 * 16 15 14 26 26 C 1.36370 * 119.82980 * 359.73301 * 25 16 15 27 27 H 1.08997 * 109.47031 * 60.00161 * 1 2 3 28 28 H 1.09000 * 109.47126 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47593 * 299.99826 * 1 2 3 30 30 H 1.09004 * 109.46520 * 59.99569 * 3 2 1 31 31 H 1.08998 * 109.47149 * 300.00192 * 3 2 1 32 32 H 1.09002 * 109.47038 * 305.00401 * 4 3 2 33 33 H 1.08995 * 109.46773 * 185.00113 * 4 3 2 34 34 H 1.08993 * 109.47035 * 30.00773 * 6 5 4 35 35 H 1.09005 * 109.46626 * 150.00150 * 6 5 4 36 36 H 1.09001 * 109.46895 * 300.00234 * 7 6 5 37 37 H 1.08992 * 109.47045 * 60.00365 * 7 6 5 38 38 H 0.97009 * 119.99910 * 4.28618 * 12 10 5 39 39 H 1.08007 * 119.91549 * 359.96845 * 14 13 12 40 40 H 1.08001 * 120.09063 * 179.74294 * 15 14 13 41 41 H 0.97006 * 120.00176 * 179.97438 * 20 19 17 42 42 H 1.08010 * 120.08714 * 179.71307 * 25 16 15 43 43 H 1.08004 * 119.91574 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1062 -0.8926 -1.3403 7 6 5.5230 -1.3044 -0.9352 8 6 5.6534 -2.7678 -1.0256 9 7 5.7532 -3.8970 -1.0967 10 6 4.2633 1.3329 -2.3200 11 8 4.1562 2.5417 -2.2456 12 7 4.6696 0.7621 -3.4712 13 6 5.0511 1.5594 -4.5471 14 6 4.3948 2.7674 -4.7826 15 6 4.7593 3.5513 -5.8373 16 6 5.8087 3.1431 -6.6838 17 6 6.1952 3.9512 -7.7748 18 1 6.5280 3.4936 -8.6946 19 6 6.1469 5.3451 -7.6644 20 7 5.6612 5.8994 -6.5829 21 14 6.7755 6.4148 -9.0607 22 1 7.2694 5.5505 -10.1627 23 1 5.6723 7.2732 -9.5620 24 1 7.8841 7.2711 -8.5678 25 6 6.4665 1.9216 -6.4398 26 6 6.0873 1.1460 -5.3842 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8899 30 1 1.6885 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8508 0.5684 0.8427 33 1 3.9784 2.1765 0.0902 34 1 3.3857 -1.3632 -0.6715 35 1 3.9138 -1.2122 -2.3645 36 1 6.2434 -0.8337 -1.6042 37 1 5.7154 -0.9847 0.0889 38 1 4.6963 -0.2044 -3.5504 39 1 3.5927 3.0807 -4.1305 40 1 4.2474 4.4844 -6.0208 41 1 5.6281 6.8659 -6.5062 42 1 7.2689 1.6000 -7.0874 43 1 6.5904 0.2090 -5.1961 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610557207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:29 Heat of formation + Delta-G solvation = -14.757987 kcal Electronic energy + Delta-G solvation = -25958.121251 eV Core-core repulsion = 22197.021233 eV Total energy + Delta-G solvation = -3761.100018 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.37244 -38.21638 -37.48146 -37.04128 -35.57157 -34.53601 -32.92469 -31.90425 -29.85013 -29.42371 -28.54084 -26.51605 -25.05200 -24.32647 -23.06029 -21.31303 -20.76449 -19.22381 -18.26746 -17.84355 -17.25698 -16.73259 -16.43392 -16.04913 -15.56390 -15.37260 -15.08373 -14.85688 -14.42702 -14.20947 -13.87880 -13.70611 -13.16465 -12.97345 -12.87297 -12.71097 -12.37180 -12.30388 -12.10975 -12.00046 -11.98786 -11.70567 -11.45543 -11.40925 -11.19146 -11.15074 -10.88454 -10.47894 -9.97981 -9.89263 -9.82372 -9.57167 -9.05957 -8.78372 -8.69611 -7.48781 -6.84060 -6.56328 -4.29821 2.42428 2.56703 2.65463 2.84743 3.07350 3.12769 3.15135 3.19023 3.55673 3.66144 3.79582 4.01428 4.25447 4.65020 4.68783 4.75645 4.95741 4.99960 5.08083 5.10844 5.20632 5.25405 5.34407 5.43813 5.53576 5.68025 5.69538 5.73489 6.15019 6.36811 6.42534 6.78445 6.83444 6.96935 7.07590 7.15732 7.29781 7.32460 7.36409 7.68097 7.80557 8.03880 8.13222 8.31112 8.41756 8.71198 8.93541 8.97224 9.08993 10.34781 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016034 B = 0.003057 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.841867 B = 9157.978251 C =10429.473946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.041 3.959 4 C 0.138 3.862 5 N -0.626 5.626 6 C 0.121 3.879 7 C -0.051 4.051 8 C 0.211 3.789 9 N -0.435 5.435 10 C 0.697 3.303 11 O -0.568 6.568 12 N -0.667 5.667 13 C 0.023 3.977 14 C -0.093 4.093 15 C -0.143 4.143 16 C 0.099 3.901 17 C -0.464 4.464 18 H 0.075 0.925 19 C 0.069 3.931 20 N -0.808 5.808 21 Si 0.913 3.087 22 H -0.263 1.263 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.203 4.203 26 C -0.115 4.115 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.390 0.610 39 H 0.108 0.892 40 H 0.129 0.871 41 H 0.277 0.723 42 H 0.096 0.904 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.258 -9.009 13.481 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C -0.037 4.037 4 C 0.014 3.986 5 N -0.364 5.364 6 C -0.005 4.005 7 C -0.093 4.093 8 C -0.107 4.107 9 N -0.112 5.112 10 C 0.399 3.601 11 O -0.444 6.444 12 N -0.314 5.314 13 C -0.070 4.070 14 C -0.113 4.113 15 C -0.163 4.163 16 C 0.096 3.904 17 C -0.495 4.495 18 H 0.093 0.907 19 C -0.146 4.146 20 N -0.436 5.436 21 Si 0.739 3.261 22 H -0.187 1.187 23 H -0.201 1.201 24 H -0.200 1.200 25 C -0.223 4.223 26 C -0.136 4.136 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.225 0.775 39 H 0.126 0.874 40 H 0.147 0.853 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.113 -9.715 13.535 17.747 hybrid contribution 0.154 0.716 -0.485 0.879 sum -5.959 -8.998 13.050 16.935 Atomic orbital electron populations 1.22698 0.81271 1.02456 0.99953 1.87821 1.19533 1.28150 1.95470 1.23107 0.94756 0.84795 1.01024 1.21372 0.91677 1.00479 0.85042 1.47030 1.71986 1.05238 1.12129 1.21334 0.94271 0.81531 1.03383 1.19862 1.01074 0.82233 1.06149 1.28976 0.93481 0.94982 0.93256 1.81246 1.08263 1.12930 1.08807 1.15986 0.78806 0.85251 0.80056 1.90944 1.58896 1.11899 1.82711 1.42288 1.68934 1.08786 1.11377 1.17082 1.01883 0.95881 0.92142 1.20652 0.99348 0.93944 0.97357 1.21298 0.98157 1.00461 0.96379 1.17719 0.89348 0.90582 0.92709 1.19502 1.39364 0.90711 0.99899 0.90686 1.25874 0.93598 0.98843 0.96277 1.69802 1.35549 1.12233 1.25972 0.86179 0.78988 0.79730 0.81238 1.18665 1.20052 1.20043 1.20675 1.02756 0.98778 1.00088 1.20037 0.96366 0.99364 0.97809 0.94094 0.89890 0.94280 0.92531 0.92361 0.89782 0.87857 0.88217 0.90237 0.86929 0.86831 0.77495 0.87393 0.85293 0.91215 0.88606 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.39 -3.80 9.53 -35.23 -0.34 -4.14 16 3 C 0.04 0.40 6.28 37.16 0.23 0.63 16 4 C 0.14 1.29 5.81 -4.04 -0.02 1.27 16 5 N -0.63 -6.95 2.44 -179.43 -0.44 -7.38 16 6 C 0.12 0.98 4.98 -4.04 -0.02 0.96 16 7 C -0.05 -0.35 6.03 -29.52 -0.18 -0.52 16 8 C 0.21 1.95 15.43 -20.76 -0.32 1.63 16 9 N -0.44 -5.39 18.54 42.15 0.78 -4.61 16 10 C 0.70 11.32 8.11 -86.93 -0.71 10.61 16 11 O -0.57 -11.78 13.34 5.29 0.07 -11.71 16 12 N -0.67 -10.96 5.18 -14.10 -0.07 -11.03 16 13 C 0.02 0.48 6.31 -83.57 -0.53 -0.04 16 14 C -0.09 -2.25 8.61 -39.79 -0.34 -2.59 16 15 C -0.14 -3.77 8.61 -39.26 -0.34 -4.11 16 16 C 0.10 2.62 5.55 -106.80 -0.59 2.03 16 17 C -0.46 -12.31 9.02 -37.85 -0.34 -12.65 16 18 H 0.07 1.91 7.85 -52.49 -0.41 1.50 16 19 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 20 N -0.81 -21.42 10.61 55.55 0.59 -20.83 16 21 Si 0.91 19.08 29.56 -169.99 -5.03 14.05 16 22 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 25 C -0.20 -4.82 9.74 -39.26 -0.38 -5.20 16 26 C -0.12 -2.44 9.90 -39.79 -0.39 -2.83 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 33 H 0.10 1.09 7.42 -51.93 -0.39 0.71 16 34 H 0.10 0.75 7.11 -51.93 -0.37 0.38 16 35 H 0.08 0.65 6.30 -51.93 -0.33 0.32 16 36 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.39 5.05 6.51 -40.82 -0.27 4.78 16 39 H 0.11 2.64 6.22 -52.48 -0.33 2.32 16 40 H 0.13 3.58 6.15 -52.49 -0.32 3.26 16 41 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 42 H 0.10 2.13 8.06 -52.48 -0.42 1.70 16 43 H 0.09 1.59 8.06 -52.48 -0.42 1.16 16 LS Contribution 368.38 15.07 5.55 5.55 Total: -1.00 -32.56 368.38 -7.56 -40.12 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -5.77 Total: 7.77 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.91 Total: -7.79 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.86 Total: -43.86 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.27 Total: -15.85 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.56 -7.56 -40.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610557207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.358 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds