Wall clock time and date at job start Tue Mar 31 2020 11:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00320 * 2 1 4 4 C 1.52993 * 109.46915 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47335 * 65.00336 * 4 3 2 6 6 C 1.46508 * 119.99496 * 269.99667 * 5 4 3 7 7 C 1.50699 * 109.46953 * 269.99693 * 6 5 4 8 8 H 1.08000 * 120.00284 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99706 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99640 * 180.02562 * 9 7 6 11 11 Si 1.86794 * 120.00022 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47392 * 89.99895 * 11 9 7 13 13 H 1.48507 * 109.47041 * 209.99671 * 11 9 7 14 14 H 1.48497 * 109.47174 * 329.99461 * 11 9 7 15 15 C 1.34772 * 120.00584 * 89.99664 * 5 4 3 16 16 O 1.21279 * 119.99847 * 359.97438 * 15 5 4 17 17 C 1.50698 * 120.00326 * 180.02562 * 15 5 4 18 18 N 1.46496 * 109.47159 * 179.97438 * 17 15 5 19 19 C 1.33994 * 125.02161 * 125.00154 * 18 17 15 20 20 C 1.38239 * 107.90850 * 179.73254 * 19 18 17 21 21 C 1.41129 * 134.82115 * 180.02562 * 20 19 18 22 22 C 1.35657 * 119.53992 * 180.02562 * 21 20 19 23 23 C 1.39679 * 121.72453 * 359.97438 * 22 21 20 24 24 C 1.35644 * 121.81877 * 0.02562 * 23 22 21 25 25 C 1.41151 * 119.59359 * 359.97438 * 24 23 22 26 26 N 1.32059 * 134.67945 * 180.02562 * 25 24 23 27 27 H 1.09006 * 109.47241 * 300.00497 * 1 2 3 28 28 H 1.08998 * 109.47234 * 60.00136 * 1 2 3 29 29 H 1.08997 * 109.47866 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47057 * 59.99704 * 3 2 1 31 31 H 1.09002 * 109.46964 * 299.99885 * 3 2 1 32 32 H 1.08998 * 109.47416 * 304.99388 * 4 3 2 33 33 H 1.09004 * 109.47107 * 184.99365 * 4 3 2 34 34 H 1.09003 * 109.47236 * 29.99984 * 6 5 4 35 35 H 1.09000 * 109.46972 * 149.99873 * 6 5 4 36 36 H 0.97005 * 119.99636 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.47173 * 59.99780 * 17 15 5 38 38 H 1.09000 * 109.46801 * 299.99830 * 17 15 5 39 39 H 1.07999 * 126.04338 * 359.74942 * 19 18 17 40 40 H 1.08001 * 120.22739 * 0.02562 * 21 20 19 41 41 H 1.07993 * 119.13777 * 179.97438 * 22 21 20 42 42 H 1.07994 * 119.09358 * 179.97438 * 23 22 21 43 43 H 1.07993 * 120.20354 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.1062 -0.8928 -1.3402 7 6 5.5016 -1.2984 -0.9411 8 1 6.2200 -0.5465 -0.6497 9 6 5.8609 -2.6295 -0.9471 10 7 7.0785 -2.9835 -0.5983 11 14 4.6181 -3.9300 -1.4505 12 1 4.7045 -4.1565 -2.9156 13 1 4.9115 -5.1982 -0.7355 14 1 3.2504 -3.4695 -1.1006 15 6 4.2634 1.3327 -2.3200 16 8 4.1557 2.5384 -2.2462 17 6 4.7167 0.6941 -3.6076 18 7 4.9625 1.7349 -4.6088 19 6 6.1098 1.8996 -5.2811 20 6 5.9519 2.9760 -6.1340 21 6 6.7758 3.6278 -7.0764 22 6 6.2916 4.6909 -7.7661 23 6 4.9918 5.1631 -7.5703 24 6 4.1469 4.5842 -6.6809 25 6 4.5825 3.4730 -5.9274 26 7 4.0317 2.7007 -5.0086 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 1.6887 1.8463 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 3.8507 0.5684 0.8427 33 1 3.9785 2.1764 0.0901 34 1 3.3857 -1.3634 -0.6712 35 1 3.9138 -1.2125 -2.3644 36 1 7.3314 -3.9200 -0.6029 37 1 3.9427 0.0175 -3.9698 38 1 5.6354 0.1344 -3.4317 39 1 7.0002 1.2977 -5.1755 40 1 7.7848 3.2825 -7.2473 41 1 6.9278 5.1850 -8.4853 42 1 4.6502 6.0131 -8.1422 43 1 3.1469 4.9706 -6.5507 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610987919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:22 Heat of formation + Delta-G solvation = 28.729258 kcal Electronic energy + Delta-G solvation = -26357.451685 eV Core-core repulsion = 22598.237416 eV Total energy + Delta-G solvation = -3759.214269 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.10651 -39.38657 -37.61790 -36.97968 -35.15737 -32.80858 -32.55797 -31.62776 -30.24154 -28.59801 -27.93537 -27.34785 -25.98281 -23.50884 -22.63916 -22.06597 -21.74450 -20.38148 -18.76242 -17.24881 -17.08528 -16.90636 -16.59461 -16.06043 -15.92805 -15.65736 -15.20123 -14.98639 -14.49743 -14.24051 -14.14008 -13.82370 -13.71204 -13.15230 -12.90357 -12.69201 -12.47742 -12.28746 -11.91782 -11.84696 -11.74925 -11.65207 -11.36095 -11.30248 -11.09137 -10.93452 -10.66322 -10.32541 -10.10483 -10.02139 -9.73373 -9.57037 -9.34502 -8.81684 -8.40071 -7.91273 -7.42850 -6.31124 -4.34474 0.81285 2.01178 2.42437 2.68046 3.05623 3.11644 3.22221 3.25655 3.59574 4.00060 4.04179 4.19942 4.38786 4.78035 4.92669 5.00941 5.12584 5.20488 5.22640 5.27522 5.35270 5.37621 5.51920 5.52586 5.54636 5.57639 5.58808 5.69118 5.71266 5.85505 5.92447 6.22431 6.25648 6.34673 6.59820 6.68794 6.69299 6.73793 6.95501 7.08766 7.16908 7.31739 7.36558 7.89989 7.94302 8.27488 8.63767 8.75005 9.27971 10.80886 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.003976 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.262522 B = 7041.124117 C = 8606.814198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.047 3.953 4 C 0.125 3.875 5 N -0.579 5.579 6 C 0.207 3.793 7 C -0.550 4.550 8 H 0.078 0.922 9 C 0.079 3.921 10 N -0.888 5.888 11 Si 0.868 3.132 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.259 1.259 15 C 0.509 3.491 16 O -0.542 6.542 17 C 0.103 3.897 18 N -0.297 5.297 19 C 0.081 3.919 20 C -0.214 4.214 21 C -0.037 4.037 22 C -0.168 4.168 23 C -0.087 4.087 24 C -0.099 4.099 25 C 0.090 3.910 26 N -0.277 5.277 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.023 0.977 36 H 0.268 0.732 37 H 0.118 0.882 38 H 0.145 0.855 39 H 0.186 0.814 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.007 8.368 -8.126 13.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.031 4.031 4 C 0.002 3.998 5 N -0.310 5.310 6 C 0.086 3.914 7 C -0.588 4.588 8 H 0.097 0.903 9 C -0.125 4.125 10 N -0.525 5.525 11 Si 0.694 3.306 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.183 1.183 15 C 0.294 3.706 16 O -0.420 6.420 17 C -0.021 4.021 18 N -0.070 5.070 19 C -0.075 4.075 20 C -0.224 4.224 21 C -0.057 4.057 22 C -0.188 4.188 23 C -0.109 4.109 24 C -0.120 4.120 25 C -0.064 4.064 26 N -0.104 5.104 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.136 0.864 38 H 0.163 0.837 39 H 0.203 0.797 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.971 8.271 -7.181 12.983 hybrid contribution 0.040 -0.704 -0.485 0.856 sum -6.931 7.567 -7.666 12.809 Atomic orbital electron populations 1.22690 0.81958 1.02362 0.99454 1.87996 1.18878 1.27729 1.95288 1.23042 0.95074 0.84818 1.00160 1.21378 0.91061 0.99904 0.87503 1.47772 1.64023 1.08905 1.10269 1.19935 0.98625 0.75320 0.97556 1.21403 0.95914 0.93848 1.47645 0.90345 1.24857 0.95070 0.98296 0.94263 1.69889 1.18160 1.17696 1.46771 0.86964 0.82682 0.81773 0.79215 1.19886 1.20810 1.18326 1.20067 0.78280 0.87131 0.85104 1.90714 1.53769 1.13920 1.83592 1.21952 1.06836 0.87255 0.86059 1.48249 1.09032 1.22394 1.27352 1.22717 0.91633 0.98682 0.94477 1.19535 0.96788 1.00841 1.05200 1.20203 0.97863 0.94398 0.93237 1.20406 0.96398 0.99140 1.02820 1.20545 0.93780 0.99159 0.97465 1.19833 1.00132 0.94769 0.97238 1.20995 0.93120 0.96708 0.95601 1.77831 1.12859 1.02957 1.16721 0.94497 0.94497 0.89934 0.92871 0.93132 0.88969 0.89109 0.92938 0.95881 0.92241 0.86397 0.83689 0.79684 0.86219 0.86539 0.86187 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.26 9.53 -35.23 -0.34 -6.59 16 3 C 0.05 0.72 6.28 37.15 0.23 0.96 16 4 C 0.12 2.18 5.81 -4.04 -0.02 2.16 16 5 N -0.58 -11.34 2.42 -175.06 -0.42 -11.77 16 6 C 0.21 4.34 3.85 -5.19 -0.02 4.32 16 7 C -0.55 -13.61 9.84 -34.44 -0.34 -13.95 16 8 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 9 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 10 N -0.89 -24.68 13.96 55.43 0.77 -23.90 16 11 Si 0.87 19.03 27.47 -169.99 -4.67 14.36 16 12 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.26 -5.50 6.54 56.52 0.37 -5.13 16 15 C 0.51 10.09 7.69 -10.99 -0.08 10.01 16 16 O -0.54 -12.12 15.25 5.56 0.08 -12.04 16 17 C 0.10 1.76 5.48 -5.20 -0.03 1.73 16 18 N -0.30 -5.22 3.35 -62.01 -0.21 -5.43 16 19 C 0.08 1.22 11.45 -16.61 -0.19 1.03 16 20 C -0.21 -3.32 6.33 -105.19 -0.67 -3.99 16 21 C -0.04 -0.46 10.09 -39.41 -0.40 -0.86 16 22 C -0.17 -1.94 9.90 -39.97 -0.40 -2.33 16 23 C -0.09 -1.03 9.89 -39.97 -0.40 -1.43 16 24 C -0.10 -1.42 10.08 -39.40 -0.40 -1.82 16 25 C 0.09 1.57 7.49 -83.05 -0.62 0.95 16 26 N -0.28 -5.39 11.56 33.26 0.38 -5.01 16 27 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.62 8.07 -51.93 -0.42 1.20 16 33 H 0.09 1.56 7.42 -51.93 -0.39 1.18 16 34 H 0.05 1.15 6.17 -51.93 -0.32 0.83 16 35 H 0.02 0.46 5.87 -51.93 -0.30 0.15 16 36 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.12 1.83 7.40 -51.93 -0.38 1.44 16 38 H 0.15 2.34 7.90 -51.93 -0.41 1.92 16 39 H 0.19 2.08 8.06 -52.49 -0.42 1.66 16 40 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -32.77 365.16 -7.24 -40.02 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -6.04 Total: 4.62 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -2.31 Total: 0.24 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.53 Total: -46.11 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.25 Total: -18.63 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.67 Total: 14.36 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.77 -7.24 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610987919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.748 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds