Wall clock time and date at job start Tue Mar 31 2020 11:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00320 * 2 1 4 4 C 1.52993 * 109.46915 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47335 * 65.00336 * 4 3 2 6 6 C 1.46508 * 119.99496 * 269.99667 * 5 4 3 7 7 C 1.50699 * 109.46953 * 269.99693 * 6 5 4 8 8 H 1.08000 * 120.00284 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99706 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99640 * 180.02562 * 9 7 6 11 11 Si 1.86794 * 120.00022 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47392 * 89.99895 * 11 9 7 13 13 H 1.48507 * 109.47041 * 209.99671 * 11 9 7 14 14 H 1.48497 * 109.47174 * 329.99461 * 11 9 7 15 15 C 1.34772 * 120.00584 * 89.99664 * 5 4 3 16 16 O 1.21279 * 119.99847 * 359.97438 * 15 5 4 17 17 C 1.50698 * 120.00326 * 180.02562 * 15 5 4 18 18 N 1.46496 * 109.47159 * 179.97438 * 17 15 5 19 19 C 1.33994 * 125.02161 * 125.00154 * 18 17 15 20 20 C 1.38239 * 107.90850 * 179.73254 * 19 18 17 21 21 C 1.41129 * 134.82115 * 180.02562 * 20 19 18 22 22 C 1.35657 * 119.53992 * 180.02562 * 21 20 19 23 23 C 1.39679 * 121.72453 * 359.97438 * 22 21 20 24 24 C 1.35644 * 121.81877 * 0.02562 * 23 22 21 25 25 C 1.41151 * 119.59359 * 359.97438 * 24 23 22 26 26 N 1.32059 * 134.67945 * 180.02562 * 25 24 23 27 27 H 1.09006 * 109.47241 * 300.00497 * 1 2 3 28 28 H 1.08998 * 109.47234 * 60.00136 * 1 2 3 29 29 H 1.08997 * 109.47866 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47057 * 59.99704 * 3 2 1 31 31 H 1.09002 * 109.46964 * 299.99885 * 3 2 1 32 32 H 1.08998 * 109.47416 * 304.99388 * 4 3 2 33 33 H 1.09004 * 109.47107 * 184.99365 * 4 3 2 34 34 H 1.09003 * 109.47236 * 29.99984 * 6 5 4 35 35 H 1.09000 * 109.46972 * 149.99873 * 6 5 4 36 36 H 0.97005 * 119.99636 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.47173 * 59.99780 * 17 15 5 38 38 H 1.09000 * 109.46801 * 299.99830 * 17 15 5 39 39 H 1.07999 * 126.04338 * 359.74942 * 19 18 17 40 40 H 1.08001 * 120.22739 * 0.02562 * 21 20 19 41 41 H 1.07993 * 119.13777 * 179.97438 * 22 21 20 42 42 H 1.07994 * 119.09358 * 179.97438 * 23 22 21 43 43 H 1.07993 * 120.20354 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.1062 -0.8928 -1.3402 7 6 5.5016 -1.2984 -0.9411 8 1 6.2200 -0.5465 -0.6497 9 6 5.8609 -2.6295 -0.9471 10 7 7.0785 -2.9835 -0.5983 11 14 4.6181 -3.9300 -1.4505 12 1 4.7045 -4.1565 -2.9156 13 1 4.9115 -5.1982 -0.7355 14 1 3.2504 -3.4695 -1.1006 15 6 4.2634 1.3327 -2.3200 16 8 4.1557 2.5384 -2.2462 17 6 4.7167 0.6941 -3.6076 18 7 4.9625 1.7349 -4.6088 19 6 6.1098 1.8996 -5.2811 20 6 5.9519 2.9760 -6.1340 21 6 6.7758 3.6278 -7.0764 22 6 6.2916 4.6909 -7.7661 23 6 4.9918 5.1631 -7.5703 24 6 4.1469 4.5842 -6.6809 25 6 4.5825 3.4730 -5.9274 26 7 4.0317 2.7007 -5.0086 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 1.6887 1.8463 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 3.8507 0.5684 0.8427 33 1 3.9785 2.1764 0.0901 34 1 3.3857 -1.3634 -0.6712 35 1 3.9138 -1.2125 -2.3644 36 1 7.3314 -3.9200 -0.6029 37 1 3.9427 0.0175 -3.9698 38 1 5.6354 0.1344 -3.4317 39 1 7.0002 1.2977 -5.1755 40 1 7.7848 3.2825 -7.2473 41 1 6.9278 5.1850 -8.4853 42 1 4.6502 6.0131 -8.1422 43 1 3.1469 4.9706 -6.5507 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610987919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:21 Heat of formation + Delta-G solvation = 7.955063 kcal Electronic energy + Delta-G solvation = -26358.352522 eV Core-core repulsion = 22598.237416 eV Total energy + Delta-G solvation = -3760.115106 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.29872 -40.88333 -38.82833 -38.06158 -36.78262 -34.61299 -33.90036 -32.73665 -31.63664 -29.74264 -29.56485 -28.58597 -27.09251 -24.76785 -24.40073 -23.32084 -22.83870 -21.50001 -20.24783 -19.11934 -18.47940 -18.18650 -17.85989 -17.36279 -17.11524 -16.75486 -16.63549 -16.26166 -15.92154 -15.70056 -15.50937 -14.91666 -14.82576 -14.70506 -14.29690 -13.95216 -13.86717 -13.78726 -13.45961 -13.14992 -12.85597 -12.79167 -12.70656 -12.52661 -12.45070 -12.35266 -12.08434 -11.97975 -11.69071 -11.29654 -11.16238 -10.94356 -10.77894 -10.62277 -9.56988 -9.52892 -8.53172 -8.29730 -6.37697 -0.25210 0.96414 1.20686 1.40349 1.45515 1.50108 1.54563 1.54803 2.14159 2.35605 2.85130 2.99917 3.04486 3.21109 3.46940 3.76786 3.96135 4.04713 4.07929 4.15154 4.20058 4.29827 4.32332 4.44887 4.49492 4.51050 4.55530 4.58185 4.69096 4.70621 4.80801 4.84389 4.92298 4.99210 5.24802 5.42395 5.57072 5.61152 5.65488 5.73913 5.82945 6.11828 6.13050 6.21750 6.50152 6.68362 6.71437 7.09219 7.29790 8.85640 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.003976 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.262522 B = 7041.124117 C = 8606.814198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.058 3.942 4 C 0.118 3.882 5 N -0.582 5.582 6 C 0.219 3.781 7 C -0.544 4.544 8 H 0.036 0.964 9 C 0.029 3.971 10 N -0.937 5.937 11 Si 0.932 3.068 12 H -0.257 1.257 13 H -0.288 1.288 14 H -0.244 1.244 15 C 0.504 3.496 16 O -0.571 6.571 17 C 0.108 3.892 18 N -0.313 5.313 19 C 0.081 3.919 20 C -0.231 4.231 21 C -0.043 4.043 22 C -0.167 4.167 23 C -0.067 4.067 24 C -0.136 4.136 25 C 0.069 3.931 26 N -0.331 5.331 27 H 0.056 0.944 28 H 0.040 0.960 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.038 0.962 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.269 0.731 37 H 0.133 0.867 38 H 0.153 0.847 39 H 0.219 0.781 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.156 0.844 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.599 8.546 -10.016 14.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C -0.020 4.020 4 C -0.004 4.004 5 N -0.313 5.313 6 C 0.098 3.902 7 C -0.582 4.582 8 H 0.055 0.945 9 C -0.171 4.171 10 N -0.576 5.576 11 Si 0.755 3.245 12 H -0.182 1.182 13 H -0.214 1.214 14 H -0.168 1.168 15 C 0.291 3.709 16 O -0.451 6.451 17 C -0.016 4.016 18 N -0.087 5.087 19 C -0.075 4.075 20 C -0.241 4.241 21 C -0.063 4.063 22 C -0.187 4.187 23 C -0.089 4.089 24 C -0.157 4.157 25 C -0.085 4.085 26 N -0.158 5.158 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.150 0.850 38 H 0.170 0.830 39 H 0.236 0.764 40 H 0.168 0.832 41 H 0.171 0.829 42 H 0.174 0.826 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.584 8.469 -9.077 14.548 hybrid contribution 0.310 -0.607 0.069 0.685 sum -7.274 7.862 -9.008 13.996 Atomic orbital electron populations 1.22896 0.79841 1.03607 1.00597 1.87936 1.21235 1.27984 1.95506 1.22876 0.93281 0.84906 1.00888 1.21502 0.92930 0.99414 0.86592 1.47833 1.63960 1.08447 1.11011 1.19709 0.96015 0.76124 0.98391 1.21491 0.96851 0.93022 1.46833 0.94523 1.25649 0.96729 1.00537 0.94219 1.70034 1.20493 1.18251 1.48822 0.85941 0.80618 0.78387 0.79577 1.18152 1.21381 1.16784 1.20544 0.77600 0.86842 0.85901 1.90688 1.55017 1.15213 1.84221 1.21914 1.07440 0.87371 0.84873 1.48235 1.09713 1.22680 1.28026 1.23373 0.91800 0.98757 0.93521 1.19972 0.96654 1.01234 1.06202 1.20623 0.98906 0.94446 0.92335 1.20905 0.96535 0.98518 1.02692 1.21032 0.93435 0.98885 0.95585 1.20103 1.01367 0.95312 0.98924 1.21554 0.94312 0.97206 0.95425 1.77716 1.14579 1.04697 1.18813 0.92545 0.94137 0.88701 0.90009 0.94372 0.89482 0.89452 0.93092 0.93787 0.92198 0.84951 0.82991 0.76432 0.83244 0.82881 0.82648 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.85 16 2 O -0.41 -12.89 9.53 -148.98 -1.42 -14.31 16 3 C 0.06 1.76 6.28 71.98 0.45 2.22 16 4 C 0.12 4.21 5.81 86.38 0.50 4.71 16 5 N -0.58 -23.10 2.42 -826.15 -2.00 -25.10 16 6 C 0.22 9.11 3.85 85.63 0.33 9.44 16 7 C -0.54 -27.30 9.84 25.60 0.25 -27.05 16 8 H 0.04 2.11 8.06 -2.91 -0.02 2.09 16 9 C 0.03 1.47 5.47 84.66 0.46 1.93 16 10 N -0.94 -53.04 13.96 21.45 0.30 -52.74 16 11 Si 0.93 38.45 27.47 68.60 1.88 40.34 16 12 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 13 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 14 H -0.24 -9.46 6.54 99.48 0.65 -8.80 16 15 C 0.50 20.45 7.69 87.66 0.67 21.13 16 16 O -0.57 -26.45 15.25 -3.02 -0.05 -26.50 16 17 C 0.11 3.72 5.48 85.63 0.47 4.19 16 18 N -0.31 -11.17 3.35 -350.09 -1.17 -12.34 16 19 C 0.08 2.40 11.45 84.36 0.97 3.37 16 20 C -0.23 -6.99 6.33 -20.23 -0.13 -7.12 16 21 C -0.04 -0.97 10.09 22.38 0.23 -0.75 16 22 C -0.17 -3.26 9.90 22.02 0.22 -3.04 16 23 C -0.07 -1.42 9.89 22.02 0.22 -1.20 16 24 C -0.14 -3.87 10.08 22.38 0.23 -3.65 16 25 C 0.07 2.43 7.49 42.16 0.32 2.75 16 26 N -0.33 -13.30 11.56 -48.70 -0.56 -13.87 16 27 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 3.13 8.07 -2.39 -0.02 3.12 16 33 H 0.09 3.12 7.42 -2.38 -0.02 3.10 16 34 H 0.05 2.17 6.17 -2.39 -0.01 2.16 16 35 H 0.04 1.67 5.87 -2.39 -0.01 1.66 16 36 H 0.27 14.29 8.31 -92.70 -0.77 13.52 16 37 H 0.13 4.05 7.40 -2.39 -0.02 4.03 16 38 H 0.15 4.91 7.90 -2.39 -0.02 4.89 16 39 H 0.22 4.59 8.06 -2.91 -0.02 4.57 16 40 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 41 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 42 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 43 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -73.80 365.16 4.37 -69.43 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.95 Total: 26.33 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 6.43 Total: 8.77 kcal Atomic # 7 Polarization: -100.62 SS G_CDS: -3.44 Total: -104.06 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -1.47 Total: -40.81 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 1.88 Total: 40.34 kcal Total: -73.80 4.37 -69.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610987919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.386 kcal (2) G-P(sol) polarization free energy of solvation -73.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds