Wall clock time and date at job start Tue Mar 31 2020 11:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00279 * 2 1 4 4 C 1.53004 * 109.47149 * 179.97438 * 3 2 1 5 5 N 1.46492 * 109.46791 * 65.00598 * 4 3 2 6 6 C 1.46504 * 119.99735 * 269.99547 * 5 4 3 7 7 C 1.50699 * 109.47061 * 270.00229 * 6 5 4 8 8 H 1.07998 * 120.00357 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99807 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99990 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00030 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47453 * 90.00148 * 11 9 7 13 13 H 1.48496 * 109.47163 * 209.99983 * 11 9 7 14 14 H 1.48499 * 109.46968 * 329.99750 * 11 9 7 15 15 C 1.34774 * 120.00409 * 90.00054 * 5 4 3 16 16 O 1.21278 * 119.99815 * 359.97438 * 15 5 4 17 17 C 1.50704 * 120.00153 * 179.97438 * 15 5 4 18 18 C 1.50699 * 109.46810 * 180.02562 * 17 15 5 19 19 C 1.39687 * 119.09006 * 270.01980 * 18 17 15 20 20 C 1.35652 * 121.72754 * 179.97438 * 19 18 17 21 21 C 1.41133 * 119.53232 * 0.03925 * 20 19 18 22 22 C 1.38244 * 134.81064 * 180.02562 * 21 20 19 23 23 N 1.33991 * 107.90445 * 179.97438 * 22 21 20 24 24 H 0.97001 * 125.02386 * 179.97438 * 23 22 21 25 25 N 1.39958 * 109.95453 * 0.02562 * 23 22 21 26 26 C 1.32064 * 108.96017 * 359.97438 * 25 23 22 27 27 C 1.35629 * 119.09216 * 90.00451 * 18 17 15 28 28 H 1.08993 * 109.47177 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47128 * 300.00067 * 1 2 3 30 30 H 1.09006 * 109.46845 * 59.99212 * 1 2 3 31 31 H 1.09006 * 109.46812 * 60.00415 * 3 2 1 32 32 H 1.09001 * 109.47372 * 300.00810 * 3 2 1 33 33 H 1.08999 * 109.46891 * 305.00075 * 4 3 2 34 34 H 1.09004 * 109.46718 * 185.00211 * 4 3 2 35 35 H 1.08997 * 109.47222 * 30.00424 * 6 5 4 36 36 H 1.08999 * 109.46986 * 150.00466 * 6 5 4 37 37 H 0.97008 * 119.99780 * 180.02562 * 10 9 7 38 38 H 1.08997 * 109.46662 * 59.99890 * 17 15 5 39 39 H 1.08998 * 109.47118 * 299.99813 * 17 15 5 40 40 H 1.07999 * 119.13844 * 359.97438 * 19 18 17 41 41 H 1.07996 * 120.23190 * 180.02562 * 20 19 18 42 42 H 1.07994 * 126.05393 * 359.95169 * 22 21 20 43 43 H 1.08002 * 120.20640 * 0.03864 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1062 -0.8926 -1.3404 7 6 5.5017 -1.2982 -0.9413 8 1 6.2201 -0.5463 -0.6498 9 6 5.8610 -2.6293 -0.9474 10 7 7.0786 -2.9834 -0.5987 11 14 4.6182 -3.9299 -1.4510 12 1 4.7047 -4.1563 -2.9160 13 1 4.9116 -5.1979 -0.7361 14 1 3.2505 -3.4694 -1.1010 15 6 4.2634 1.3329 -2.3200 16 8 4.1558 2.5387 -2.2460 17 6 4.7177 0.6945 -3.6073 18 6 4.9715 1.7654 -4.6368 19 6 3.9252 2.1678 -5.4702 20 6 4.0938 3.1270 -6.4144 21 6 5.3564 3.7392 -6.5664 22 6 5.8709 4.7182 -7.3959 23 7 7.1604 4.8929 -7.0762 24 1 7.7600 5.5230 -7.5057 25 7 7.5146 4.0312 -6.0318 26 6 6.4591 3.3150 -5.6898 27 6 6.2093 2.3120 -4.7284 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 1.6887 1.8463 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8508 0.5684 0.8427 34 1 3.9785 2.1765 0.0903 35 1 3.3858 -1.3632 -0.6714 36 1 3.9139 -1.2122 -2.3645 37 1 7.3315 -3.9199 -0.6033 38 1 3.9443 0.0174 -3.9697 39 1 5.6367 0.1354 -3.4310 40 1 2.9565 1.7032 -5.3598 41 1 3.2679 3.4199 -7.0456 42 1 5.3296 5.2481 -8.1656 43 1 6.9996 1.9809 -4.0709 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619434659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:07 Heat of formation + Delta-G solvation = 16.835799 kcal Electronic energy + Delta-G solvation = -26319.067770 eV Core-core repulsion = 22559.337762 eV Total energy + Delta-G solvation = -3759.730008 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.14525 -39.37130 -37.66290 -36.95526 -34.90271 -32.57169 -32.23197 -31.83349 -30.12348 -28.70486 -27.81752 -27.29701 -25.90405 -23.60810 -22.47848 -22.33892 -21.08201 -20.55683 -18.35586 -17.95087 -17.00095 -16.68277 -16.51459 -15.99145 -15.67106 -15.42618 -15.01662 -14.80581 -14.75349 -14.35989 -14.10188 -13.77027 -13.61630 -13.03913 -12.69630 -12.53377 -12.11852 -12.04129 -11.75499 -11.73733 -11.61039 -11.43090 -11.25330 -11.11378 -10.94020 -10.76133 -10.47884 -10.21040 -10.16553 -10.16130 -9.54613 -9.46811 -9.09440 -8.63400 -8.41454 -7.67679 -7.47091 -6.13073 -4.14010 0.75077 1.97630 2.56940 2.72079 3.25458 3.34184 3.37641 3.39858 3.80062 4.07692 4.17589 4.36070 4.36733 4.63559 5.07661 5.18368 5.23761 5.31994 5.33307 5.38385 5.46827 5.50715 5.60188 5.64529 5.69112 5.75243 5.76791 5.79602 5.90855 6.10463 6.31135 6.37075 6.37780 6.60922 6.61312 6.65922 6.90188 6.97595 7.06389 7.08821 7.37972 7.44203 7.56776 7.68191 8.21578 8.49848 8.90368 9.00227 9.47132 10.99559 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012024 B = 0.003980 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.129585 B = 7033.772773 C = 8417.467782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.048 3.952 4 C 0.122 3.878 5 N -0.584 5.584 6 C 0.210 3.790 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.077 3.923 10 N -0.893 5.893 11 Si 0.868 3.132 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.260 1.260 15 C 0.522 3.478 16 O -0.566 6.566 17 C -0.106 4.106 18 C -0.011 4.011 19 C -0.127 4.127 20 C -0.057 4.057 21 C -0.204 4.204 22 C 0.071 3.929 23 N -0.433 5.433 24 H 0.440 0.560 25 N -0.309 5.309 26 C 0.113 3.887 27 C -0.093 4.093 28 H 0.081 0.919 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.027 0.973 37 H 0.265 0.735 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.184 0.816 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.527 11.562 -10.787 18.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.030 4.030 4 C -0.001 4.001 5 N -0.314 5.314 6 C 0.089 3.911 7 C -0.579 4.579 8 H 0.095 0.905 9 C -0.127 4.127 10 N -0.531 5.531 11 Si 0.695 3.305 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.184 1.184 15 C 0.311 3.689 16 O -0.447 6.447 17 C -0.146 4.146 18 C -0.016 4.016 19 C -0.146 4.146 20 C -0.078 4.078 21 C -0.214 4.214 22 C -0.086 4.086 23 N -0.133 5.133 24 H 0.284 0.716 25 N -0.138 5.138 26 C -0.040 4.040 27 C -0.114 4.114 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.201 0.799 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.067 12.064 -10.446 17.881 hybrid contribution -1.264 -0.457 -0.585 1.466 sum -9.331 11.607 -11.031 18.533 Atomic orbital electron populations 1.22682 0.82163 1.02288 0.99331 1.88019 1.18687 1.27817 1.95250 1.23060 0.95360 0.84689 0.99893 1.21339 0.90802 0.99873 0.88121 1.47825 1.64264 1.08927 1.10363 1.19856 0.98170 0.75546 0.97556 1.21435 0.96098 0.93704 1.46678 0.90468 1.24856 0.95032 0.98297 0.94484 1.69903 1.18200 1.17418 1.47559 0.86953 0.82710 0.81676 0.79186 1.19922 1.21088 1.18415 1.20267 0.76800 0.86654 0.85199 1.90622 1.55030 1.14496 1.84503 1.20792 1.05328 0.96824 0.91623 1.18965 0.92595 0.95459 0.94567 1.20428 0.98592 0.99034 0.96551 1.20080 0.94033 0.95591 0.98051 1.19646 0.96655 1.03156 1.01936 1.22581 0.86278 0.99256 1.00484 1.46282 1.08989 1.30793 1.27225 0.71638 1.77695 1.20852 1.09258 1.05986 1.20905 0.90606 0.96155 0.96352 1.19731 0.97686 0.96108 0.97912 0.90004 0.94595 0.94585 0.93124 0.93254 0.89340 0.89219 0.93518 0.95551 0.92486 0.88278 0.86295 0.86245 0.86142 0.79912 0.85237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.35 9.53 -35.23 -0.34 -6.69 16 3 C 0.05 0.75 6.28 37.16 0.23 0.98 16 4 C 0.12 2.23 5.81 -4.04 -0.02 2.21 16 5 N -0.58 -12.01 2.42 -175.06 -0.42 -12.43 16 6 C 0.21 4.70 3.85 -5.19 -0.02 4.68 16 7 C -0.54 -14.31 9.83 -34.44 -0.34 -14.65 16 8 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 9 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 10 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 11 Si 0.87 20.09 27.47 -169.99 -4.67 15.42 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 14 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 15 C 0.52 10.63 7.67 -10.98 -0.08 10.54 16 16 O -0.57 -12.50 15.61 5.56 0.09 -12.42 16 17 C -0.11 -1.91 4.33 -29.03 -0.13 -2.03 16 18 C -0.01 -0.18 4.33 -105.01 -0.45 -0.64 16 19 C -0.13 -1.87 9.51 -39.97 -0.38 -2.25 16 20 C -0.06 -0.75 10.09 -39.41 -0.40 -1.14 16 21 C -0.20 -2.84 6.33 -105.19 -0.67 -3.50 16 22 C 0.07 0.70 12.08 -16.61 -0.20 0.50 16 23 N -0.43 -4.60 7.18 30.84 0.22 -4.37 16 24 H 0.44 2.76 8.96 -182.70 -1.64 1.13 16 25 N -0.31 -4.91 12.70 33.25 0.42 -4.49 16 26 C 0.11 1.91 7.49 -83.05 -0.62 1.29 16 27 C -0.09 -1.67 9.65 -39.41 -0.38 -2.05 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.09 1.64 8.07 -51.93 -0.42 1.22 16 34 H 0.09 1.60 7.42 -51.93 -0.39 1.22 16 35 H 0.05 1.08 6.17 -51.93 -0.32 0.76 16 36 H 0.03 0.57 5.87 -51.93 -0.30 0.26 16 37 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.10 1.58 7.33 -51.93 -0.38 1.20 16 39 H 0.12 2.28 7.92 -51.93 -0.41 1.87 16 40 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 41 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.18 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.13 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 364.41 15.07 5.49 5.49 Total: -1.00 -35.00 364.41 -8.13 -43.13 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.25 Total: 4.35 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -2.45 Total: -2.57 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: 0.99 Total: -46.72 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.25 Total: -19.11 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.67 Total: 15.42 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.00 -8.13 -43.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619434659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.971 kcal (2) G-P(sol) polarization free energy of solvation -35.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds