Wall clock time and date at job start Tue Mar 31 2020 11:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00279 * 2 1 4 4 C 1.53004 * 109.47149 * 179.97438 * 3 2 1 5 5 N 1.46492 * 109.46791 * 65.00598 * 4 3 2 6 6 C 1.46504 * 119.99735 * 269.99547 * 5 4 3 7 7 C 1.50699 * 109.47061 * 270.00229 * 6 5 4 8 8 H 1.07998 * 120.00357 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99807 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99990 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00030 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47453 * 90.00148 * 11 9 7 13 13 H 1.48496 * 109.47163 * 209.99983 * 11 9 7 14 14 H 1.48499 * 109.46968 * 329.99750 * 11 9 7 15 15 C 1.34774 * 120.00409 * 90.00054 * 5 4 3 16 16 O 1.21278 * 119.99815 * 359.97438 * 15 5 4 17 17 C 1.50704 * 120.00153 * 179.97438 * 15 5 4 18 18 C 1.50699 * 109.46810 * 180.02562 * 17 15 5 19 19 C 1.39687 * 119.09006 * 270.01980 * 18 17 15 20 20 C 1.35652 * 121.72754 * 179.97438 * 19 18 17 21 21 C 1.41133 * 119.53232 * 0.03925 * 20 19 18 22 22 C 1.38244 * 134.81064 * 180.02562 * 21 20 19 23 23 N 1.33991 * 107.90445 * 179.97438 * 22 21 20 24 24 H 0.97001 * 125.02386 * 179.97438 * 23 22 21 25 25 N 1.39958 * 109.95453 * 0.02562 * 23 22 21 26 26 C 1.32064 * 108.96017 * 359.97438 * 25 23 22 27 27 C 1.35629 * 119.09216 * 90.00451 * 18 17 15 28 28 H 1.08993 * 109.47177 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47128 * 300.00067 * 1 2 3 30 30 H 1.09006 * 109.46845 * 59.99212 * 1 2 3 31 31 H 1.09006 * 109.46812 * 60.00415 * 3 2 1 32 32 H 1.09001 * 109.47372 * 300.00810 * 3 2 1 33 33 H 1.08999 * 109.46891 * 305.00075 * 4 3 2 34 34 H 1.09004 * 109.46718 * 185.00211 * 4 3 2 35 35 H 1.08997 * 109.47222 * 30.00424 * 6 5 4 36 36 H 1.08999 * 109.46986 * 150.00466 * 6 5 4 37 37 H 0.97008 * 119.99780 * 180.02562 * 10 9 7 38 38 H 1.08997 * 109.46662 * 59.99890 * 17 15 5 39 39 H 1.08998 * 109.47118 * 299.99813 * 17 15 5 40 40 H 1.07999 * 119.13844 * 359.97438 * 19 18 17 41 41 H 1.07996 * 120.23190 * 180.02562 * 20 19 18 42 42 H 1.07994 * 126.05393 * 359.95169 * 22 21 20 43 43 H 1.08002 * 120.20640 * 0.03864 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1062 -0.8926 -1.3404 7 6 5.5017 -1.2982 -0.9413 8 1 6.2201 -0.5463 -0.6498 9 6 5.8610 -2.6293 -0.9474 10 7 7.0786 -2.9834 -0.5987 11 14 4.6182 -3.9299 -1.4510 12 1 4.7047 -4.1563 -2.9160 13 1 4.9116 -5.1979 -0.7361 14 1 3.2505 -3.4694 -1.1010 15 6 4.2634 1.3329 -2.3200 16 8 4.1558 2.5387 -2.2460 17 6 4.7177 0.6945 -3.6073 18 6 4.9715 1.7654 -4.6368 19 6 3.9252 2.1678 -5.4702 20 6 4.0938 3.1270 -6.4144 21 6 5.3564 3.7392 -6.5664 22 6 5.8709 4.7182 -7.3959 23 7 7.1604 4.8929 -7.0762 24 1 7.7600 5.5230 -7.5057 25 7 7.5146 4.0312 -6.0318 26 6 6.4591 3.3150 -5.6898 27 6 6.2093 2.3120 -4.7284 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 1.6887 1.8463 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8508 0.5684 0.8427 34 1 3.9785 2.1765 0.0903 35 1 3.3858 -1.3632 -0.6714 36 1 3.9139 -1.2122 -2.3645 37 1 7.3315 -3.9199 -0.6033 38 1 3.9443 0.0174 -3.9697 39 1 5.6367 0.1354 -3.4310 40 1 2.9565 1.7032 -5.3598 41 1 3.2679 3.4199 -7.0456 42 1 5.3296 5.2481 -8.1656 43 1 6.9996 1.9809 -4.0709 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619434659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:06 Heat of formation + Delta-G solvation = -7.792120 kcal Electronic energy + Delta-G solvation = -26320.135717 eV Core-core repulsion = 22559.337762 eV Total energy + Delta-G solvation = -3760.797955 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.16071 -40.93537 -38.86339 -38.14886 -36.60521 -34.54867 -33.47621 -32.94166 -31.56026 -29.75487 -29.52385 -28.65299 -27.02121 -24.79384 -24.32732 -23.64465 -22.24828 -21.59119 -19.90781 -19.06173 -18.92171 -18.13042 -17.67541 -17.40633 -17.01892 -16.72117 -16.35216 -16.03270 -15.89642 -15.75430 -15.56055 -15.04206 -14.81506 -14.72360 -14.24852 -13.82688 -13.71339 -13.48583 -13.21081 -12.89746 -12.81175 -12.72099 -12.64237 -12.55204 -12.42574 -12.31913 -12.00350 -11.89713 -11.64622 -11.26199 -11.21443 -10.82822 -10.72252 -10.51724 -9.54895 -9.39075 -8.55022 -8.25988 -6.32853 -0.26407 0.86466 1.43320 1.45460 1.52761 1.57027 1.76439 1.92484 2.31862 2.39468 2.93156 2.94446 3.09141 3.34041 3.73160 3.88571 3.97347 4.14668 4.20258 4.27390 4.35652 4.40807 4.42531 4.57263 4.58813 4.60779 4.65835 4.68903 4.73166 4.83555 4.88099 4.89868 4.93632 5.07228 5.24216 5.48570 5.50710 5.58774 5.73554 5.79210 6.01231 6.21488 6.30855 6.35519 6.64448 6.66269 6.73915 7.27775 7.38689 8.90538 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012024 B = 0.003980 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.129585 B = 7033.772773 C = 8417.467782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.409 6.409 3 C 0.060 3.940 4 C 0.115 3.885 5 N -0.590 5.590 6 C 0.225 3.775 7 C -0.541 4.541 8 H 0.027 0.973 9 C 0.018 3.982 10 N -0.945 5.945 11 Si 0.940 3.060 12 H -0.259 1.259 13 H -0.286 1.286 14 H -0.238 1.238 15 C 0.520 3.480 16 O -0.585 6.585 17 C -0.102 4.102 18 C -0.008 4.008 19 C -0.164 4.164 20 C -0.025 4.025 21 C -0.241 4.241 22 C 0.122 3.878 23 N -0.416 5.416 24 H 0.459 0.541 25 N -0.365 5.365 26 C 0.086 3.914 27 C -0.137 4.137 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.267 0.733 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.138 0.862 41 H 0.167 0.833 42 H 0.250 0.750 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.225 12.734 -13.736 22.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.329 6.329 3 C -0.017 4.017 4 C -0.008 4.008 5 N -0.319 5.319 6 C 0.103 3.897 7 C -0.580 4.580 8 H 0.045 0.955 9 C -0.180 4.180 10 N -0.585 5.585 11 Si 0.763 3.237 12 H -0.183 1.183 13 H -0.212 1.212 14 H -0.162 1.162 15 C 0.309 3.691 16 O -0.467 6.467 17 C -0.141 4.141 18 C -0.013 4.013 19 C -0.183 4.183 20 C -0.045 4.045 21 C -0.251 4.251 22 C -0.037 4.037 23 N -0.118 5.118 24 H 0.307 0.693 25 N -0.194 5.194 26 C -0.066 4.066 27 C -0.159 4.159 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.141 0.859 39 H 0.113 0.887 40 H 0.156 0.844 41 H 0.185 0.815 42 H 0.266 0.734 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.755 13.268 -13.385 22.212 hybrid contribution -0.027 -0.609 0.264 0.664 sum -11.782 12.659 -13.121 21.708 Atomic orbital electron populations 1.22898 0.79819 1.03521 1.00709 1.87953 1.21274 1.28121 1.95518 1.22870 0.92919 0.84853 1.01086 1.21482 0.93313 0.99199 0.86843 1.47883 1.64419 1.08339 1.11291 1.19589 0.95218 0.76685 0.98226 1.21589 0.97311 0.92890 1.46188 0.95489 1.25794 0.97056 1.00843 0.94324 1.70072 1.20810 1.18081 1.49536 0.85814 0.80568 0.77925 0.79434 1.18320 1.21231 1.16153 1.20626 0.76197 0.86462 0.85789 1.90593 1.55859 1.15270 1.84945 1.20758 1.04652 0.97511 0.91224 1.18997 0.93083 0.94778 0.94460 1.20593 0.98593 1.01268 0.97878 1.20576 0.94685 0.92876 0.96358 1.20133 0.96575 1.05306 1.03066 1.23565 0.85219 0.96119 0.98758 1.46365 1.10036 1.29722 1.25629 0.69279 1.77617 1.21664 1.11381 1.08783 1.20971 0.92448 0.96246 0.96940 1.19626 0.97747 0.98781 0.99728 0.88924 0.92741 0.93640 0.90222 0.93564 0.90387 0.89567 0.93247 0.93752 0.92378 0.85931 0.88719 0.84405 0.81513 0.73438 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.41 -12.99 9.53 -148.98 -1.42 -14.41 16 3 C 0.06 1.82 6.28 71.98 0.45 2.27 16 4 C 0.11 4.28 5.81 86.38 0.50 4.78 16 5 N -0.59 -24.94 2.42 -826.16 -2.00 -26.94 16 6 C 0.22 10.16 3.85 85.63 0.33 10.49 16 7 C -0.54 -30.05 9.83 25.60 0.25 -29.79 16 8 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 9 C 0.02 1.03 5.47 84.65 0.46 1.49 16 10 N -0.95 -57.96 13.96 21.45 0.30 -57.66 16 11 Si 0.94 41.42 27.47 68.60 1.88 43.30 16 12 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 13 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 14 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 15 C 0.52 21.97 7.67 87.66 0.67 22.64 16 16 O -0.58 -26.75 15.61 -3.02 -0.05 -26.80 16 17 C -0.10 -3.84 4.33 29.10 0.13 -3.72 16 18 C -0.01 -0.30 4.33 -20.12 -0.09 -0.39 16 19 C -0.16 -4.64 9.51 22.02 0.21 -4.43 16 20 C -0.03 -0.57 10.09 22.38 0.23 -0.35 16 21 C -0.24 -6.09 6.33 -20.23 -0.13 -6.22 16 22 C 0.12 1.82 12.08 84.36 1.02 2.84 16 23 N -0.42 -7.73 7.18 -56.35 -0.40 -8.14 16 24 H 0.46 4.32 8.96 -213.41 -1.91 2.41 16 25 N -0.36 -11.79 12.70 -48.70 -0.62 -12.41 16 26 C 0.09 2.99 7.49 42.16 0.32 3.31 16 27 C -0.14 -5.36 9.65 22.38 0.22 -5.14 16 28 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 3.02 8.07 -2.39 -0.02 3.00 16 34 H 0.09 3.22 7.42 -2.38 -0.02 3.20 16 35 H 0.05 2.24 6.17 -2.39 -0.01 2.23 16 36 H 0.04 1.86 5.87 -2.39 -0.01 1.85 16 37 H 0.27 15.31 8.31 -92.70 -0.77 14.53 16 38 H 0.12 3.91 7.33 -2.39 -0.02 3.89 16 39 H 0.09 3.99 7.92 -2.39 -0.02 3.97 16 40 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 41 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 42 H 0.25 0.35 8.06 -2.91 -0.02 0.32 16 43 H 0.10 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -83.34 364.41 2.58 -80.77 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: -0.94 Total: 22.66 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 5.82 Total: -0.37 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -2.72 Total: -105.15 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -1.47 Total: -41.21 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 1.88 Total: 43.30 kcal Total: -83.34 2.58 -80.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619434659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.975 kcal (2) G-P(sol) polarization free energy of solvation -83.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds