Wall clock time and date at job start Tue Mar 31 2020 11:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99996 * 2 1 4 4 C 1.53005 * 109.47493 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46725 * 64.99828 * 4 3 2 6 6 C 1.46504 * 120.00077 * 270.00281 * 5 4 3 7 7 C 1.50697 * 109.47048 * 269.99856 * 6 5 4 8 8 H 1.08000 * 120.00128 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00061 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00293 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99869 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47175 * 89.99860 * 11 9 7 13 13 H 1.48501 * 109.47213 * 210.00092 * 11 9 7 14 14 H 1.48503 * 109.46819 * 330.00148 * 11 9 7 15 15 C 1.34777 * 120.00196 * 90.00583 * 5 4 3 16 16 O 1.21271 * 120.00487 * 179.97438 * 15 5 4 17 17 C 1.50703 * 119.99564 * 359.97438 * 15 5 4 18 18 C 1.50700 * 109.47072 * 180.02562 * 17 15 5 19 19 C 1.39681 * 119.14175 * 89.99879 * 18 17 15 20 20 C 1.35630 * 121.82015 * 180.02562 * 19 18 17 21 21 C 1.41159 * 119.59503 * 359.97438 * 20 19 18 22 22 N 1.32056 * 134.67829 * 180.36886 * 21 20 19 23 23 N 1.39958 * 108.95961 * 180.02562 * 22 21 20 24 24 H 0.97001 * 125.02723 * 179.85266 * 23 22 21 25 25 C 1.33989 * 109.95309 * 359.57745 * 23 22 21 26 26 C 1.38249 * 107.90772 * 0.24728 * 25 23 22 27 27 C 1.35657 * 119.13209 * 269.99672 * 18 17 15 28 28 H 1.09003 * 109.47423 * 59.99609 * 1 2 3 29 29 H 1.08994 * 109.47299 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46855 * 299.99711 * 1 2 3 31 31 H 1.09008 * 109.47263 * 60.00214 * 3 2 1 32 32 H 1.08999 * 109.47696 * 300.00430 * 3 2 1 33 33 H 1.09001 * 109.46892 * 305.00466 * 4 3 2 34 34 H 1.08994 * 109.47669 * 185.00135 * 4 3 2 35 35 H 1.08993 * 109.47024 * 30.00348 * 6 5 4 36 36 H 1.09004 * 109.47162 * 150.00621 * 6 5 4 37 37 H 0.96999 * 120.00188 * 180.02562 * 10 9 7 38 38 H 1.08996 * 109.47622 * 59.99541 * 17 15 5 39 39 H 1.09004 * 109.47127 * 299.99971 * 17 15 5 40 40 H 1.08002 * 119.08575 * 359.97438 * 19 18 17 41 41 H 1.08005 * 120.20336 * 179.97438 * 20 19 18 42 42 H 1.07998 * 126.04939 * 180.20907 * 25 23 22 43 43 H 1.07997 * 120.23253 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.1051 -0.8921 -1.3428 7 6 5.5009 -1.2978 -0.9451 8 1 6.2195 -0.5459 -0.6539 9 6 5.8603 -2.6289 -0.9519 10 7 7.0781 -2.9831 -0.6043 11 14 4.6171 -3.9294 -1.4548 12 1 4.7023 -4.1552 -2.9200 13 1 4.9111 -5.1977 -0.7405 14 1 3.2496 -3.4689 -1.1036 15 6 4.2614 1.3337 -2.3218 16 8 4.6262 0.8204 -3.3582 17 6 4.1277 2.8320 -2.2293 18 6 4.5032 3.4523 -3.5504 19 6 3.5123 3.6515 -4.5145 20 6 3.7898 4.2045 -5.7215 21 6 5.1128 4.5939 -6.0223 22 7 5.7030 5.1488 -7.0652 23 7 7.0661 5.3029 -6.7877 24 1 7.7183 5.6852 -7.3954 25 6 7.3360 4.8498 -5.5559 26 6 6.1558 4.3853 -5.0058 27 6 5.7949 3.8028 -3.7720 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6886 1.8464 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8515 0.5682 0.8409 34 1 3.9785 2.1765 0.0889 35 1 3.3852 -1.3629 -0.6735 36 1 3.9120 -1.2114 -2.3669 37 1 7.3310 -3.9195 -0.6095 38 1 4.7896 3.2085 -1.4495 39 1 3.0969 3.0905 -1.9869 40 1 2.4974 3.3561 -4.2930 41 1 3.0032 4.3461 -6.4480 42 1 8.3043 4.8472 -5.0776 43 1 6.5417 3.6375 -3.0095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619434678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:04 Heat of formation + Delta-G solvation = 21.089427 kcal Electronic energy + Delta-G solvation = -26258.046906 eV Core-core repulsion = 22498.501348 eV Total energy + Delta-G solvation = -3759.545557 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.22108 -39.35873 -37.73438 -37.05595 -34.82578 -32.80195 -32.39068 -31.07991 -30.17861 -29.70572 -27.96448 -26.46917 -25.99218 -23.96024 -22.69942 -22.32213 -20.93119 -20.66098 -18.35455 -18.18934 -16.87044 -16.80840 -16.62499 -16.11913 -15.67423 -15.41741 -15.03423 -14.85127 -14.68521 -14.57882 -13.99159 -13.77706 -13.59156 -13.05518 -13.03843 -12.51050 -12.21070 -12.15482 -11.77223 -11.72495 -11.64141 -11.54085 -11.42905 -11.25814 -10.93599 -10.74347 -10.35211 -10.27211 -10.22236 -10.01893 -9.52581 -9.43212 -8.94497 -8.64552 -8.47729 -7.60431 -7.48326 -5.99049 -3.95992 0.67143 1.88556 2.48185 2.66163 3.38673 3.43157 3.44543 3.49149 3.76759 3.96437 4.10690 4.28634 4.50810 4.62562 4.94691 5.10295 5.10929 5.17354 5.23889 5.34390 5.37483 5.41252 5.43161 5.48307 5.54338 5.60290 5.62666 5.67256 5.75038 5.76336 5.84585 6.20954 6.22807 6.49704 6.53727 6.82888 6.93352 7.01447 7.02704 7.13724 7.32925 7.46937 7.57943 7.75344 8.38148 8.57839 9.02803 9.10467 9.63024 11.14501 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.003835 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.137977 B = 7298.939099 C = 8753.977036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.043 3.957 4 C 0.111 3.889 5 N -0.588 5.588 6 C 0.220 3.780 7 C -0.524 4.524 8 H 0.073 0.927 9 C 0.072 3.928 10 N -0.902 5.902 11 Si 0.873 3.127 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.262 1.262 15 C 0.505 3.495 16 O -0.529 6.529 17 C -0.101 4.101 18 C -0.093 4.093 19 C -0.051 4.051 20 C -0.114 4.114 21 C 0.107 3.893 22 N -0.316 5.316 23 N -0.431 5.431 24 H 0.441 0.559 25 C 0.080 3.920 26 C -0.199 4.199 27 C -0.029 4.029 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.036 0.964 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.042 0.958 36 H 0.031 0.969 37 H 0.263 0.737 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.188 0.812 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.418 18.306 -2.456 19.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C -0.036 4.036 4 C -0.013 4.013 5 N -0.319 5.319 6 C 0.099 3.901 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.130 4.130 10 N -0.541 5.541 11 Si 0.700 3.300 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.186 1.186 15 C 0.292 3.708 16 O -0.405 6.405 17 C -0.141 4.141 18 C -0.095 4.095 19 C -0.073 4.073 20 C -0.135 4.135 21 C -0.046 4.046 22 N -0.144 5.144 23 N -0.131 5.131 24 H 0.285 0.715 25 C -0.076 4.076 26 C -0.209 4.209 27 C -0.049 4.049 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.204 0.796 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.177 18.145 -4.210 19.962 hybrid contribution -0.141 -0.743 0.343 0.831 sum -7.318 17.402 -3.867 19.270 Atomic orbital electron populations 1.22704 0.81982 1.02528 0.99304 1.88066 1.18797 1.27292 1.95185 1.23161 0.95393 0.85281 0.99716 1.21539 0.91005 0.99340 0.89439 1.47851 1.65052 1.08816 1.10183 1.19650 0.97516 0.75129 0.97760 1.21383 0.96233 0.93460 1.45218 0.90938 1.24821 0.95123 0.98353 0.94691 1.69898 1.18216 1.17143 1.48853 0.86884 0.82606 0.81339 0.79187 1.20121 1.21277 1.18607 1.20299 0.78333 0.88211 0.84002 1.90696 1.45706 1.74804 1.29344 1.20772 1.03363 0.93781 0.96156 1.18696 0.93532 1.01422 0.95815 1.20503 0.99043 0.95273 0.92504 1.19746 0.92292 1.03798 0.97632 1.20946 0.95350 0.97068 0.91251 1.77613 0.87084 1.27996 1.21745 1.46252 1.08780 1.45402 1.12698 0.71522 1.22690 0.99584 0.98361 0.87009 1.19587 0.92430 1.11012 0.97854 1.20054 0.95452 0.95216 0.94214 0.94488 0.89924 0.94512 0.92853 0.93555 0.88835 0.89647 0.94050 0.95085 0.92759 0.88523 0.88973 0.85885 0.85613 0.79554 0.85812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.48 16 2 O -0.37 -5.92 9.53 -35.23 -0.34 -6.25 16 3 C 0.04 0.54 6.28 37.16 0.23 0.78 16 4 C 0.11 1.68 5.62 -4.04 -0.02 1.65 16 5 N -0.59 -11.93 2.42 -175.06 -0.42 -12.36 16 6 C 0.22 5.53 4.05 -5.19 -0.02 5.51 16 7 C -0.52 -15.29 9.94 -34.44 -0.34 -15.64 16 8 H 0.07 2.29 8.06 -52.49 -0.42 1.86 16 9 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 10 N -0.90 -28.28 13.96 55.43 0.77 -27.50 16 11 Si 0.87 22.34 27.47 -169.99 -4.67 17.67 16 12 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 15 C 0.51 10.05 7.67 -10.98 -0.08 9.97 16 16 O -0.53 -13.15 15.61 5.56 0.09 -13.07 16 17 C -0.10 -1.39 4.33 -29.03 -0.13 -1.51 16 18 C -0.09 -1.36 4.33 -105.01 -0.45 -1.81 16 19 C -0.05 -0.70 9.51 -39.98 -0.38 -1.08 16 20 C -0.11 -1.60 10.08 -39.41 -0.40 -1.99 16 21 C 0.11 1.63 7.49 -83.06 -0.62 1.01 16 22 N -0.32 -4.52 12.70 33.25 0.42 -4.10 16 23 N -0.43 -4.41 7.18 30.84 0.22 -4.18 16 24 H 0.44 2.63 8.96 -182.70 -1.64 0.99 16 25 C 0.08 0.83 12.08 -16.61 -0.20 0.63 16 26 C -0.20 -2.81 6.33 -105.19 -0.67 -3.47 16 27 C -0.03 -0.42 9.66 -39.41 -0.38 -0.80 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.05 0.54 7.30 -51.93 -0.38 0.16 16 33 H 0.09 1.54 8.07 -51.93 -0.42 1.12 16 34 H 0.09 0.97 6.44 -51.93 -0.33 0.64 16 35 H 0.04 1.03 6.17 -51.93 -0.32 0.71 16 36 H 0.03 0.85 6.85 -51.93 -0.36 0.49 16 37 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 38 H 0.10 1.12 7.32 -51.93 -0.38 0.74 16 39 H 0.09 0.99 7.19 -51.93 -0.37 0.62 16 40 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 42 H 0.19 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 362.93 15.07 5.47 5.47 Total: -1.00 -39.83 362.93 -8.08 -47.91 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.17 Total: -0.34 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -2.45 Total: -3.25 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.99 Total: -48.14 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.25 Total: -19.32 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.67 Total: 17.67 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -39.83 -8.08 -47.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619434678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.999 kcal (2) G-P(sol) polarization free energy of solvation -39.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds