Wall clock time and date at job start Tue Mar 31 2020 11:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99996 * 2 1 4 4 C 1.53005 * 109.47493 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46725 * 64.99828 * 4 3 2 6 6 C 1.46504 * 120.00077 * 270.00281 * 5 4 3 7 7 C 1.50697 * 109.47048 * 269.99856 * 6 5 4 8 8 H 1.08000 * 120.00128 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00061 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00293 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99869 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47175 * 89.99860 * 11 9 7 13 13 H 1.48501 * 109.47213 * 210.00092 * 11 9 7 14 14 H 1.48503 * 109.46819 * 330.00148 * 11 9 7 15 15 C 1.34777 * 120.00196 * 90.00583 * 5 4 3 16 16 O 1.21271 * 120.00487 * 179.97438 * 15 5 4 17 17 C 1.50703 * 119.99564 * 359.97438 * 15 5 4 18 18 C 1.50700 * 109.47072 * 180.02562 * 17 15 5 19 19 C 1.39681 * 119.14175 * 89.99879 * 18 17 15 20 20 C 1.35630 * 121.82015 * 180.02562 * 19 18 17 21 21 C 1.41159 * 119.59503 * 359.97438 * 20 19 18 22 22 N 1.32056 * 134.67829 * 180.36886 * 21 20 19 23 23 N 1.39958 * 108.95961 * 180.02562 * 22 21 20 24 24 H 0.97001 * 125.02723 * 179.85266 * 23 22 21 25 25 C 1.33989 * 109.95309 * 359.57745 * 23 22 21 26 26 C 1.38249 * 107.90772 * 0.24728 * 25 23 22 27 27 C 1.35657 * 119.13209 * 269.99672 * 18 17 15 28 28 H 1.09003 * 109.47423 * 59.99609 * 1 2 3 29 29 H 1.08994 * 109.47299 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46855 * 299.99711 * 1 2 3 31 31 H 1.09008 * 109.47263 * 60.00214 * 3 2 1 32 32 H 1.08999 * 109.47696 * 300.00430 * 3 2 1 33 33 H 1.09001 * 109.46892 * 305.00466 * 4 3 2 34 34 H 1.08994 * 109.47669 * 185.00135 * 4 3 2 35 35 H 1.08993 * 109.47024 * 30.00348 * 6 5 4 36 36 H 1.09004 * 109.47162 * 150.00621 * 6 5 4 37 37 H 0.96999 * 120.00188 * 180.02562 * 10 9 7 38 38 H 1.08996 * 109.47622 * 59.99541 * 17 15 5 39 39 H 1.09004 * 109.47127 * 299.99971 * 17 15 5 40 40 H 1.08002 * 119.08575 * 359.97438 * 19 18 17 41 41 H 1.08005 * 120.20336 * 179.97438 * 20 19 18 42 42 H 1.07998 * 126.04939 * 180.20907 * 25 23 22 43 43 H 1.07997 * 120.23253 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.1051 -0.8921 -1.3428 7 6 5.5009 -1.2978 -0.9451 8 1 6.2195 -0.5459 -0.6539 9 6 5.8603 -2.6289 -0.9519 10 7 7.0781 -2.9831 -0.6043 11 14 4.6171 -3.9294 -1.4548 12 1 4.7023 -4.1552 -2.9200 13 1 4.9111 -5.1977 -0.7405 14 1 3.2496 -3.4689 -1.1036 15 6 4.2614 1.3337 -2.3218 16 8 4.6262 0.8204 -3.3582 17 6 4.1277 2.8320 -2.2293 18 6 4.5032 3.4523 -3.5504 19 6 3.5123 3.6515 -4.5145 20 6 3.7898 4.2045 -5.7215 21 6 5.1128 4.5939 -6.0223 22 7 5.7030 5.1488 -7.0652 23 7 7.0661 5.3029 -6.7877 24 1 7.7183 5.6852 -7.3954 25 6 7.3360 4.8498 -5.5559 26 6 6.1558 4.3853 -5.0058 27 6 5.7949 3.8028 -3.7720 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6886 1.8464 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8515 0.5682 0.8409 34 1 3.9785 2.1765 0.0889 35 1 3.3852 -1.3629 -0.6735 36 1 3.9120 -1.2114 -2.3669 37 1 7.3310 -3.9195 -0.6095 38 1 4.7896 3.2085 -1.4495 39 1 3.0969 3.0905 -1.9869 40 1 2.4974 3.3561 -4.2930 41 1 3.0032 4.3461 -6.4480 42 1 8.3043 4.8472 -5.0776 43 1 6.5417 3.6375 -3.0095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619434678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:04 Heat of formation + Delta-G solvation = -8.294443 kcal Electronic energy + Delta-G solvation = -26259.321086 eV Core-core repulsion = 22498.501348 eV Total energy + Delta-G solvation = -3760.819738 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.16839 -40.80160 -38.78669 -38.17053 -36.41678 -34.74693 -33.65535 -32.18114 -31.43746 -30.91236 -29.47018 -27.72080 -27.02066 -25.07866 -24.11593 -23.82286 -22.09468 -21.62143 -19.81656 -19.11331 -19.02631 -18.06880 -17.66450 -17.33505 -16.91405 -16.67619 -16.27211 -16.07855 -15.81275 -15.68645 -15.56772 -14.96035 -14.81660 -14.63861 -14.28709 -13.94908 -13.75500 -13.50823 -13.10447 -12.91275 -12.78655 -12.71625 -12.65471 -12.48914 -12.41377 -12.27427 -11.96684 -11.85800 -11.68454 -11.26731 -11.24480 -10.78464 -10.55983 -10.44671 -9.65013 -9.28315 -8.49553 -8.30246 -6.32277 -0.27297 0.84512 1.33323 1.36034 1.46798 1.50582 1.89339 1.95263 2.34020 2.41490 2.93492 3.03178 3.07205 3.33018 3.79076 3.85324 4.00175 4.19517 4.25599 4.28654 4.37908 4.46172 4.53858 4.59514 4.60085 4.62342 4.66593 4.70987 4.75876 4.81884 4.91927 5.04017 5.07201 5.08332 5.25972 5.48574 5.52815 5.53777 5.74121 5.79270 5.97767 6.30256 6.30843 6.40636 6.61921 6.68411 6.87603 7.28716 7.57885 8.86518 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.003835 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.137977 B = 7298.939099 C = 8753.977036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.419 6.419 3 C 0.044 3.956 4 C 0.103 3.897 5 N -0.595 5.595 6 C 0.236 3.764 7 C -0.528 4.528 8 H 0.034 0.966 9 C 0.013 3.987 10 N -0.945 5.945 11 Si 0.939 3.061 12 H -0.279 1.279 13 H -0.274 1.274 14 H -0.244 1.244 15 C 0.498 3.502 16 O -0.590 6.590 17 C -0.083 4.083 18 C -0.117 4.117 19 C -0.055 4.055 20 C -0.132 4.132 21 C 0.084 3.916 22 N -0.351 5.351 23 N -0.415 5.415 24 H 0.459 0.541 25 C 0.109 3.891 26 C -0.238 4.238 27 C -0.034 4.034 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.046 0.954 36 H 0.005 0.995 37 H 0.267 0.733 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.234 0.766 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.614 19.922 -1.778 21.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.339 6.339 3 C -0.033 4.033 4 C -0.020 4.020 5 N -0.326 5.326 6 C 0.113 3.887 7 C -0.567 4.567 8 H 0.052 0.948 9 C -0.184 4.184 10 N -0.586 5.586 11 Si 0.763 3.237 12 H -0.205 1.205 13 H -0.199 1.199 14 H -0.167 1.167 15 C 0.287 3.713 16 O -0.471 6.471 17 C -0.123 4.123 18 C -0.119 4.119 19 C -0.077 4.077 20 C -0.153 4.153 21 C -0.069 4.069 22 N -0.181 5.181 23 N -0.117 5.117 24 H 0.307 0.693 25 C -0.050 4.050 26 C -0.248 4.248 27 C -0.055 4.055 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.145 0.855 35 H 0.064 0.936 36 H 0.023 0.977 37 H 0.075 0.925 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.159 0.841 41 H 0.155 0.845 42 H 0.250 0.750 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.401 19.819 -3.513 21.811 hybrid contribution 0.392 -1.150 0.126 1.222 sum -8.008 18.669 -3.387 20.595 Atomic orbital electron populations 1.22851 0.80065 1.03027 1.00893 1.87994 1.21080 1.29248 1.95573 1.23219 0.93100 0.84748 1.02214 1.21926 0.93395 1.00493 0.86155 1.47925 1.65148 1.07018 1.12472 1.19143 0.94826 0.78885 0.95833 1.21640 0.97570 0.92862 1.44639 0.94768 1.25727 0.97122 1.00867 0.94705 1.70033 1.20312 1.17924 1.50344 0.85833 0.80813 0.78651 0.78428 1.20505 1.19884 1.16695 1.21403 0.76507 0.90681 0.82708 1.90660 1.48353 1.76432 1.31643 1.20748 1.06348 0.88387 0.96767 1.18880 0.93970 1.02467 0.96570 1.20742 0.99895 0.94799 0.92287 1.19995 0.92640 1.04425 0.98262 1.21271 0.96205 0.97520 0.91902 1.77530 0.88906 1.29419 1.22241 1.46309 1.08061 1.44247 1.13097 0.69290 1.23404 1.00268 0.95042 0.86266 1.19966 0.93732 1.12986 0.98100 1.20312 0.95799 0.94716 0.94651 0.93551 0.90156 0.92154 0.89023 0.92084 0.90860 0.85509 0.93598 0.97675 0.92455 0.85834 0.85207 0.84078 0.84549 0.74952 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.42 -12.36 9.53 -148.98 -1.42 -13.78 16 3 C 0.04 0.98 6.28 71.98 0.45 1.43 16 4 C 0.10 2.88 5.62 86.38 0.49 3.36 16 5 N -0.60 -23.89 2.42 -826.16 -2.00 -25.89 16 6 C 0.24 12.03 4.05 85.63 0.35 12.37 16 7 C -0.53 -31.82 9.94 25.60 0.25 -31.56 16 8 H 0.03 2.25 8.06 -2.91 -0.02 2.23 16 9 C 0.01 0.82 5.47 84.66 0.46 1.28 16 10 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 11 Si 0.94 46.81 27.47 68.60 1.88 48.69 16 12 H -0.28 -14.01 7.11 99.48 0.71 -13.31 16 13 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.24 -11.32 6.54 99.48 0.65 -10.67 16 15 C 0.50 19.56 7.67 87.66 0.67 20.24 16 16 O -0.59 -30.07 15.61 -3.00 -0.05 -30.12 16 17 C -0.08 -2.09 4.33 29.10 0.13 -1.97 16 18 C -0.12 -3.29 4.33 -20.11 -0.09 -3.38 16 19 C -0.05 -1.48 9.51 22.01 0.21 -1.27 16 20 C -0.13 -3.73 10.08 22.38 0.23 -3.50 16 21 C 0.08 2.53 7.49 42.16 0.32 2.84 16 22 N -0.35 -9.91 12.70 -48.71 -0.62 -10.53 16 23 N -0.42 -7.74 7.18 -56.34 -0.40 -8.15 16 24 H 0.46 4.45 8.96 -213.41 -1.91 2.53 16 25 C 0.11 2.00 12.08 84.37 1.02 3.02 16 26 C -0.24 -6.49 6.33 -20.23 -0.13 -6.61 16 27 C -0.03 -0.97 9.66 22.38 0.22 -0.75 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.06 1.18 7.30 -2.39 -0.02 1.16 16 33 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 34 H 0.13 2.42 6.44 -2.39 -0.02 2.41 16 35 H 0.05 2.29 6.17 -2.39 -0.01 2.28 16 36 H 0.01 0.29 6.85 -2.39 -0.02 0.27 16 37 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 38 H 0.12 2.43 7.32 -2.39 -0.02 2.41 16 39 H 0.13 2.26 7.19 -2.38 -0.02 2.25 16 40 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 41 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 42 H 0.23 1.87 8.06 -2.91 -0.02 1.85 16 43 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -92.57 362.93 2.58 -89.99 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -0.93 Total: 13.01 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 5.82 Total: -2.69 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -2.72 Total: -105.11 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -1.47 Total: -43.90 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.88 Total: 48.69 kcal Total: -92.57 2.58 -89.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619434678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.697 kcal (2) G-P(sol) polarization free energy of solvation -92.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds