Wall clock time and date at job start Tue Mar 31 2020 11:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99655 * 2 1 4 4 C 1.50701 * 109.46612 * 179.97438 * 3 2 1 5 5 O 1.21302 * 120.00038 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00182 * 180.02562 * 4 3 2 7 7 C 1.40148 * 120.00123 * 185.27603 * 6 4 3 8 8 C 1.38852 * 119.99951 * 33.30790 * 7 6 4 9 9 C 1.38059 * 120.00521 * 180.02562 * 8 7 6 10 10 C 1.38889 * 119.99803 * 0.24628 * 9 8 7 11 11 N 1.39890 * 120.00385 * 179.72538 * 10 9 8 12 12 C 1.46494 * 119.99861 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.47249 * 180.02562 * 12 11 10 14 14 H 1.09003 * 109.46535 * 55.00039 * 13 12 11 15 15 C 1.47203 * 109.46991 * 295.00176 * 13 12 11 16 16 N 9.30952 * 154.22482 * 345.27980 * 4 1 2 17 17 C 1.52994 * 109.47047 * 175.00076 * 13 12 11 18 18 C 1.50699 * 109.47153 * 185.00136 * 17 13 12 19 19 H 1.08000 * 119.99891 * 0.02562 * 18 17 13 20 20 C 1.37877 * 120.00611 * 180.02562 * 18 17 13 21 21 N 1.31509 * 120.00208 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99671 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46909 * 90.00376 * 22 20 18 24 24 H 1.48500 * 109.47279 * 210.00327 * 22 20 18 25 25 H 1.48500 * 109.47218 * 330.00754 * 22 20 18 26 26 C 1.38889 * 119.98793 * 359.54537 * 10 9 8 27 27 C 1.38060 * 119.99488 * 0.43327 * 26 10 9 28 28 H 1.09000 * 109.47045 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47405 * 300.00160 * 1 2 3 30 30 H 1.09006 * 109.46782 * 60.00259 * 1 2 3 31 31 H 1.08999 * 109.47176 * 60.00324 * 3 2 1 32 32 H 1.08996 * 109.47416 * 299.99355 * 3 2 1 33 33 H 0.97005 * 119.99982 * 5.27069 * 6 4 3 34 34 H 1.08004 * 119.99297 * 359.97438 * 8 7 6 35 35 H 1.08007 * 120.00056 * 179.97438 * 9 8 7 36 36 H 0.97002 * 119.99907 * 0.02562 * 11 10 9 37 37 H 1.09002 * 109.47658 * 300.00358 * 12 11 10 38 38 H 1.08998 * 109.47288 * 60.00391 * 12 11 10 39 39 H 1.09006 * 109.47631 * 304.99675 * 17 13 12 40 40 H 1.08994 * 109.47497 * 65.00065 * 17 13 12 41 41 H 0.97007 * 119.99984 * 179.97438 * 21 20 18 42 42 H 1.07994 * 119.99865 * 180.18552 * 26 10 9 43 43 H 1.08006 * 119.99640 * 179.76902 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0913 0.0015 6 7 4.2765 2.2967 0.0013 7 6 5.6694 2.1890 -0.1097 8 6 6.2286 1.1696 -0.8688 9 6 7.6007 1.0630 -0.9778 10 6 8.4220 1.9724 -0.3240 11 7 9.8124 1.8611 -0.4297 12 6 10.6786 2.8200 0.2604 13 6 12.1433 2.4766 -0.0180 14 1 12.3090 2.4377 -1.0947 15 6 12.4616 1.1674 0.5750 16 7 12.7079 0.1592 1.0287 17 6 13.0445 3.5484 0.5984 18 6 14.4780 3.2775 0.2205 19 1 14.7218 2.4262 -0.3978 20 6 15.4783 4.1163 0.6641 21 7 16.7293 3.8795 0.3348 22 14 15.0565 5.5890 1.7331 23 1 15.0976 5.1906 3.1631 24 1 16.0421 6.6735 1.4929 25 1 13.6946 6.0736 1.3932 26 6 7.8624 2.9946 0.4317 27 6 6.4902 3.1011 0.5401 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8623 3.1705 0.0785 34 1 5.5900 0.4595 -1.3733 35 1 8.0356 0.2697 -1.5679 36 1 10.2030 1.1489 -0.9600 37 1 10.4668 3.8265 -0.1008 38 1 10.4914 2.7722 1.3331 39 1 12.7498 4.5294 0.2256 40 1 12.9446 3.5270 1.6835 41 1 17.4330 4.4699 0.6466 42 1 8.5008 3.7036 0.9377 43 1 6.0551 3.8938 1.1308 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732916192.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:00 Heat of formation + Delta-G solvation = -23.930793 kcal Electronic energy + Delta-G solvation = -24470.279607 eV Core-core repulsion = 20708.781826 eV Total energy + Delta-G solvation = -3761.497781 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.70021 -39.19494 -37.97799 -37.22921 -35.61127 -34.38254 -33.38850 -31.84732 -30.95854 -29.91424 -28.30536 -26.84326 -25.94050 -24.12837 -22.53282 -22.11822 -21.50827 -20.46809 -18.20705 -17.71278 -17.41553 -16.98785 -16.87102 -16.70161 -16.36456 -15.74300 -15.16477 -14.93726 -14.47000 -14.30421 -14.01123 -13.71985 -13.56259 -13.42985 -13.38016 -13.12694 -12.84010 -12.58841 -12.50879 -12.46697 -12.14399 -11.96438 -11.61604 -11.46787 -11.17518 -11.00849 -10.70166 -10.42869 -10.32900 -10.14579 -10.03802 -9.90865 -9.42670 -9.32139 -8.92998 -8.68100 -7.14504 -6.16989 -4.18838 1.37340 1.45566 2.32196 2.42087 3.22569 3.29399 3.30745 3.39867 3.47317 3.56849 3.62333 3.87673 4.26023 4.32369 4.53565 4.55494 4.60970 4.80244 4.83660 4.85543 4.98782 5.11497 5.17465 5.18106 5.35074 5.43821 5.47853 5.51060 5.79172 5.85569 6.01817 6.09151 6.13649 6.21350 6.35618 6.44099 6.49728 6.82861 6.85941 6.99099 7.14380 7.35291 7.55194 7.75322 7.86313 8.25147 8.34238 8.85268 9.42027 10.95878 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032949 B = 0.001960 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.605763 B =14282.740623 C =14838.869924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.045 3.955 4 C 0.508 3.492 5 O -0.501 6.501 6 N -0.667 5.667 7 C 0.072 3.928 8 C -0.068 4.068 9 C -0.180 4.180 10 C 0.216 3.784 11 N -0.746 5.746 12 C 0.128 3.872 13 C 0.007 3.993 14 H 0.114 0.886 15 C 0.234 3.766 16 N -0.457 5.457 17 C -0.002 4.002 18 C -0.532 4.532 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.895 5.895 22 Si 0.878 3.122 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.262 1.262 26 C -0.181 4.181 27 C -0.091 4.091 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.407 0.593 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.400 0.600 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.041 0.959 40 H 0.023 0.977 41 H 0.265 0.735 42 H 0.129 0.871 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.652 2.567 -2.572 32.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.035 4.035 4 C 0.293 3.707 5 O -0.374 6.374 6 N -0.314 5.314 7 C -0.022 4.022 8 C -0.088 4.088 9 C -0.203 4.203 10 C 0.111 3.889 11 N -0.375 5.375 12 C 0.003 3.997 13 C -0.015 4.015 14 H 0.131 0.869 15 C -0.083 4.083 16 N -0.133 5.133 17 C -0.041 4.041 18 C -0.570 4.570 19 H 0.092 0.908 20 C -0.130 4.130 21 N -0.532 5.532 22 Si 0.705 3.295 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.186 1.186 26 C -0.204 4.204 27 C -0.112 4.112 28 H 0.111 0.889 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.242 0.758 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.235 0.765 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.146 0.854 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -31.538 0.254 -1.772 31.589 hybrid contribution -0.289 1.628 0.305 1.681 sum -31.826 1.881 -1.467 31.916 Atomic orbital electron populations 1.22860 0.80126 1.03521 1.00177 1.88033 1.19965 1.24966 1.95432 1.22202 0.91203 0.87285 1.02824 1.20364 0.88763 0.84583 0.76952 1.90772 1.74237 1.26333 1.46044 1.43226 1.05229 1.09232 1.73709 1.17375 0.81559 1.00567 1.02698 1.20796 0.94414 0.97219 0.96420 1.20491 0.92769 1.01505 1.05561 1.17877 0.83790 0.93516 0.93694 1.44901 1.02125 1.34358 1.56107 1.21549 0.87776 0.93037 0.97321 1.19215 0.93845 0.86825 1.01582 0.86861 1.28812 0.92232 0.94018 0.93264 1.80928 1.09336 1.13346 1.09697 1.19615 0.95222 0.92929 0.96350 1.20986 0.88859 1.13402 1.33723 0.90782 1.24986 0.94825 0.97624 0.95604 1.69900 0.99729 1.38355 1.45254 0.86812 0.78808 0.82707 0.81187 1.20217 1.21184 1.18635 1.20470 0.94412 1.00733 1.04815 1.20570 0.92861 0.99320 0.98409 0.88947 0.93705 0.93704 0.90067 0.89929 0.75811 0.85217 0.85919 0.76485 0.90159 0.91630 0.94060 0.95858 0.92465 0.85362 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.37 -3.35 10.24 -55.14 -0.56 -3.91 16 3 C 0.05 0.28 6.42 36.01 0.23 0.51 16 4 C 0.51 5.04 7.64 -10.98 -0.08 4.95 16 5 O -0.50 -7.49 14.19 -14.37 -0.20 -7.69 16 6 N -0.67 -5.30 5.35 -9.81 -0.05 -5.36 16 7 C 0.07 0.78 6.28 -83.60 -0.53 0.26 16 8 C -0.07 -0.85 8.65 -39.42 -0.34 -1.19 16 9 C -0.18 -2.22 9.89 -39.41 -0.39 -2.61 16 10 C 0.22 2.67 6.66 -83.70 -0.56 2.12 16 11 N -0.75 -9.21 5.53 -58.59 -0.32 -9.54 16 12 C 0.13 1.65 4.28 -4.04 -0.02 1.63 16 13 C 0.01 0.12 2.26 -93.41 -0.21 -0.09 16 14 H 0.11 1.72 8.14 -51.93 -0.42 1.29 16 15 C 0.23 4.53 13.44 -20.87 -0.28 4.25 16 16 N -0.46 -9.88 18.52 42.03 0.78 -9.10 16 17 C 0.00 -0.04 3.49 -27.89 -0.10 -0.14 16 18 C -0.53 -13.87 9.15 -34.44 -0.32 -14.18 16 19 H 0.07 2.13 7.84 -52.49 -0.41 1.72 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 21 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 22 Si 0.88 20.06 27.47 -169.99 -4.67 15.39 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.26 -5.46 6.54 56.52 0.37 -5.09 16 26 C -0.18 -2.04 9.31 -39.41 -0.37 -2.41 16 27 C -0.09 -0.90 9.95 -39.42 -0.39 -1.30 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.41 1.59 8.82 -40.82 -0.36 1.23 16 34 H 0.13 1.71 6.41 -52.48 -0.34 1.38 16 35 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 36 H 0.40 4.79 8.23 -40.82 -0.34 4.45 16 37 H 0.08 0.90 7.94 -51.93 -0.41 0.49 16 38 H 0.07 0.85 7.95 -51.93 -0.41 0.44 16 39 H 0.04 0.78 7.20 -51.93 -0.37 0.40 16 40 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 41 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.13 1.30 6.73 -52.49 -0.35 0.95 16 43 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 371.87 15.07 5.60 5.60 Total: -1.00 -35.70 371.87 -6.93 -42.62 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.94 Total: 2.79 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -2.33 Total: -5.07 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 1.18 Total: -49.73 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -0.77 Total: -11.60 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.67 Total: 15.39 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.70 -6.93 -42.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732916192.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.692 kcal (2) G-P(sol) polarization free energy of solvation -35.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds