Wall clock time and date at job start Tue Mar 31 2020 11:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99655 * 2 1 4 4 C 1.50701 * 109.46612 * 179.97438 * 3 2 1 5 5 O 1.21302 * 120.00038 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00182 * 180.02562 * 4 3 2 7 7 C 1.40148 * 120.00123 * 185.27603 * 6 4 3 8 8 C 1.38852 * 119.99951 * 33.30790 * 7 6 4 9 9 C 1.38059 * 120.00521 * 180.02562 * 8 7 6 10 10 C 1.38889 * 119.99803 * 0.24628 * 9 8 7 11 11 N 1.39890 * 120.00385 * 179.72538 * 10 9 8 12 12 C 1.46494 * 119.99861 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.47249 * 180.02562 * 12 11 10 14 14 H 1.09003 * 109.46535 * 55.00039 * 13 12 11 15 15 C 1.47203 * 109.46991 * 295.00176 * 13 12 11 16 16 N 9.30952 * 154.22482 * 345.27980 * 4 1 2 17 17 C 1.52994 * 109.47047 * 175.00076 * 13 12 11 18 18 C 1.50699 * 109.47153 * 185.00136 * 17 13 12 19 19 H 1.08000 * 119.99891 * 0.02562 * 18 17 13 20 20 C 1.37877 * 120.00611 * 180.02562 * 18 17 13 21 21 N 1.31509 * 120.00208 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99671 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46909 * 90.00376 * 22 20 18 24 24 H 1.48500 * 109.47279 * 210.00327 * 22 20 18 25 25 H 1.48500 * 109.47218 * 330.00754 * 22 20 18 26 26 C 1.38889 * 119.98793 * 359.54537 * 10 9 8 27 27 C 1.38060 * 119.99488 * 0.43327 * 26 10 9 28 28 H 1.09000 * 109.47045 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47405 * 300.00160 * 1 2 3 30 30 H 1.09006 * 109.46782 * 60.00259 * 1 2 3 31 31 H 1.08999 * 109.47176 * 60.00324 * 3 2 1 32 32 H 1.08996 * 109.47416 * 299.99355 * 3 2 1 33 33 H 0.97005 * 119.99982 * 5.27069 * 6 4 3 34 34 H 1.08004 * 119.99297 * 359.97438 * 8 7 6 35 35 H 1.08007 * 120.00056 * 179.97438 * 9 8 7 36 36 H 0.97002 * 119.99907 * 0.02562 * 11 10 9 37 37 H 1.09002 * 109.47658 * 300.00358 * 12 11 10 38 38 H 1.08998 * 109.47288 * 60.00391 * 12 11 10 39 39 H 1.09006 * 109.47631 * 304.99675 * 17 13 12 40 40 H 1.08994 * 109.47497 * 65.00065 * 17 13 12 41 41 H 0.97007 * 119.99984 * 179.97438 * 21 20 18 42 42 H 1.07994 * 119.99865 * 180.18552 * 26 10 9 43 43 H 1.08006 * 119.99640 * 179.76902 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0913 0.0015 6 7 4.2765 2.2967 0.0013 7 6 5.6694 2.1890 -0.1097 8 6 6.2286 1.1696 -0.8688 9 6 7.6007 1.0630 -0.9778 10 6 8.4220 1.9724 -0.3240 11 7 9.8124 1.8611 -0.4297 12 6 10.6786 2.8200 0.2604 13 6 12.1433 2.4766 -0.0180 14 1 12.3090 2.4377 -1.0947 15 6 12.4616 1.1674 0.5750 16 7 12.7079 0.1592 1.0287 17 6 13.0445 3.5484 0.5984 18 6 14.4780 3.2775 0.2205 19 1 14.7218 2.4262 -0.3978 20 6 15.4783 4.1163 0.6641 21 7 16.7293 3.8795 0.3348 22 14 15.0565 5.5890 1.7331 23 1 15.0976 5.1906 3.1631 24 1 16.0421 6.6735 1.4929 25 1 13.6946 6.0736 1.3932 26 6 7.8624 2.9946 0.4317 27 6 6.4902 3.1011 0.5401 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8623 3.1705 0.0785 34 1 5.5900 0.4595 -1.3733 35 1 8.0356 0.2697 -1.5679 36 1 10.2030 1.1489 -0.9600 37 1 10.4668 3.8265 -0.1008 38 1 10.4914 2.7722 1.3331 39 1 12.7498 4.5294 0.2256 40 1 12.9446 3.5270 1.6835 41 1 17.4330 4.4699 0.6466 42 1 8.5008 3.7036 0.9377 43 1 6.0551 3.8938 1.1308 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732916192.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:59 Heat of formation + Delta-G solvation = -49.387719 kcal Electronic energy + Delta-G solvation = -24471.383502 eV Core-core repulsion = 20708.781826 eV Total energy + Delta-G solvation = -3762.601676 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.46565 -40.04034 -38.81006 -38.27703 -36.71739 -35.70088 -34.84452 -33.40786 -31.81623 -30.67740 -29.37622 -27.84554 -26.57361 -25.23868 -23.63680 -23.23719 -22.76188 -21.27359 -19.00951 -18.87630 -18.67715 -18.20459 -17.92789 -17.28966 -16.94114 -16.79541 -16.21769 -15.81489 -15.57839 -15.42271 -15.19760 -14.82995 -14.68842 -14.54634 -14.30246 -14.18567 -14.01865 -13.95066 -13.52934 -13.39422 -13.26215 -13.12238 -12.96948 -12.59324 -12.34295 -12.05910 -12.02412 -11.70450 -11.69677 -11.54778 -11.33437 -10.86004 -10.74493 -10.73018 -10.14078 -9.79533 -8.23911 -8.02061 -6.30328 0.54543 0.57914 1.46076 1.46921 1.57919 1.60853 1.83752 1.91175 1.94746 2.42542 2.54275 3.02508 3.10810 3.14984 3.18227 3.70284 3.90272 4.05655 4.14963 4.21324 4.29036 4.29587 4.51518 4.52856 4.55146 4.59774 4.64758 4.71671 4.83747 4.85649 4.89678 5.10527 5.18940 5.23455 5.41265 5.42901 5.52896 5.62098 5.63800 5.98788 6.08856 6.24291 6.46994 6.55113 6.70256 6.78600 6.83211 7.21617 7.34447 8.92831 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032949 B = 0.001960 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.605763 B =14282.740623 C =14838.869924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.048 3.952 4 C 0.501 3.499 5 O -0.562 6.562 6 N -0.650 5.650 7 C 0.067 3.933 8 C -0.087 4.087 9 C -0.194 4.194 10 C 0.203 3.797 11 N -0.750 5.750 12 C 0.140 3.860 13 C 0.015 3.985 14 H 0.125 0.875 15 C 0.247 3.753 16 N -0.505 5.505 17 C -0.001 4.001 18 C -0.533 4.533 19 H 0.028 0.972 20 C 0.002 3.998 21 N -0.955 5.955 22 Si 0.948 3.052 23 H -0.278 1.278 24 H -0.292 1.292 25 H -0.216 1.216 26 C -0.185 4.185 27 C -0.084 4.084 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.429 0.571 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.399 0.601 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.030 0.970 41 H 0.264 0.736 42 H 0.146 0.854 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.122 6.027 -1.526 36.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.031 4.031 4 C 0.289 3.711 5 O -0.439 6.439 6 N -0.299 5.299 7 C -0.028 4.028 8 C -0.108 4.108 9 C -0.217 4.217 10 C 0.099 3.901 11 N -0.379 5.379 12 C 0.015 3.985 13 C -0.007 4.007 14 H 0.143 0.857 15 C -0.069 4.069 16 N -0.182 5.182 17 C -0.040 4.040 18 C -0.571 4.571 19 H 0.046 0.954 20 C -0.195 4.195 21 N -0.596 5.596 22 Si 0.770 3.230 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.138 1.138 26 C -0.208 4.208 27 C -0.104 4.104 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.268 0.732 34 H 0.130 0.870 35 H 0.139 0.861 36 H 0.233 0.767 37 H 0.128 0.872 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.164 0.836 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -35.083 3.758 -0.736 35.291 hybrid contribution 0.764 0.466 -0.086 0.899 sum -34.319 4.224 -0.822 34.588 Atomic orbital electron populations 1.23029 0.78150 1.04063 1.01809 1.87972 1.22245 1.26961 1.95843 1.22374 0.88023 0.86826 1.05858 1.21203 0.90570 0.83928 0.75407 1.90749 1.75559 1.28652 1.48962 1.43128 1.04147 1.10098 1.72501 1.17556 0.83091 1.00076 1.02070 1.20798 0.94414 0.97994 0.97598 1.20552 0.92992 1.01983 1.06177 1.17974 0.83550 0.94150 0.94422 1.44827 1.02201 1.34505 1.56387 1.21466 0.84925 0.94306 0.97824 1.19296 0.95772 0.83991 1.01660 0.85706 1.29523 0.90849 0.94365 0.92194 1.80930 1.10977 1.14959 1.11371 1.19575 0.91979 0.95453 0.97014 1.21397 0.92312 1.11402 1.32032 0.95383 1.26065 0.94457 1.01505 0.97463 1.70094 1.01338 1.40301 1.47819 0.85708 0.80695 0.78121 0.78444 1.20420 1.21827 1.13757 1.20780 0.95282 1.00437 1.04257 1.20906 0.92360 0.99450 0.97694 0.89152 0.92011 0.92014 0.86709 0.86722 0.73176 0.86957 0.86138 0.76668 0.87207 0.91181 0.90889 0.95167 0.92710 0.83590 0.82499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.41 -7.09 10.24 -129.94 -1.33 -8.42 16 3 C 0.05 0.48 6.42 71.24 0.46 0.93 16 4 C 0.50 9.39 7.64 87.66 0.67 10.06 16 5 O -0.56 -17.29 14.19 15.94 0.23 -17.06 16 6 N -0.65 -8.85 5.35 -303.34 -1.62 -10.47 16 7 C 0.07 1.33 6.28 38.11 0.24 1.57 16 8 C -0.09 -2.20 8.65 22.37 0.19 -2.01 16 9 C -0.19 -4.81 9.89 22.38 0.22 -4.59 16 10 C 0.20 4.68 6.66 38.17 0.25 4.94 16 11 N -0.75 -17.11 5.53 -339.27 -1.88 -18.98 16 12 C 0.14 3.09 4.28 86.38 0.37 3.46 16 13 C 0.01 0.45 2.26 -12.60 -0.03 0.42 16 14 H 0.13 3.56 8.14 -2.39 -0.02 3.54 16 15 C 0.25 9.48 13.44 89.48 1.20 10.68 16 16 N -0.51 -22.19 18.52 19.97 0.37 -21.82 16 17 C 0.00 -0.05 3.49 29.85 0.10 0.06 16 18 C -0.53 -27.81 9.15 25.60 0.23 -27.58 16 19 H 0.03 1.67 7.84 -2.91 -0.02 1.64 16 20 C 0.00 0.10 5.47 84.66 0.46 0.56 16 21 N -0.96 -58.34 13.96 21.45 0.30 -58.04 16 22 Si 0.95 39.95 27.47 68.60 1.88 41.83 16 23 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 24 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.22 -7.45 6.54 99.48 0.65 -6.80 16 26 C -0.18 -3.54 9.31 22.38 0.21 -3.33 16 27 C -0.08 -1.38 9.95 22.37 0.22 -1.15 16 28 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.06 0.24 8.14 -2.38 -0.02 0.23 16 31 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.43 1.77 8.82 -92.70 -0.82 0.95 16 34 H 0.11 3.18 6.41 -2.91 -0.02 3.16 16 35 H 0.12 2.86 8.06 -2.91 -0.02 2.84 16 36 H 0.40 9.24 8.23 -92.71 -0.76 8.48 16 37 H 0.11 1.86 7.94 -2.39 -0.02 1.84 16 38 H 0.07 1.53 7.95 -2.39 -0.02 1.51 16 39 H 0.07 2.35 7.20 -2.38 -0.02 2.33 16 40 H 0.03 1.11 7.57 -2.39 -0.02 1.09 16 41 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 42 H 0.15 2.25 6.73 -2.91 -0.02 2.23 16 43 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -83.35 371.87 3.43 -79.92 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -0.58 Total: 17.58 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 6.06 Total: -4.53 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -2.83 Total: -109.32 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -1.10 Total: -25.48 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 1.88 Total: 41.83 kcal Total: -83.35 3.43 -79.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732916192.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.532 kcal (2) G-P(sol) polarization free energy of solvation -83.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds