Wall clock time and date at job start Tue Mar 31 2020 11:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36071 * 116.99842 * 2 1 4 4 C 1.38523 * 120.01075 * 0.02562 * 3 2 1 5 5 C 1.38210 * 120.08754 * 179.70239 * 4 3 2 6 6 C 1.38888 * 120.10101 * 0.54994 * 5 4 3 7 7 N 1.39926 * 119.99072 * 179.72811 * 6 5 4 8 8 C 1.46505 * 120.00166 * 359.72315 * 7 6 5 9 9 C 1.52995 * 109.47447 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.46811 * 304.99922 * 9 8 7 11 11 C 1.47197 * 109.47159 * 64.99894 * 9 8 7 12 12 N 8.72660 * 117.18171 * 343.33610 * 2 1 3 13 13 C 1.53002 * 109.47155 * 185.00070 * 9 8 7 14 14 C 1.50702 * 109.46947 * 175.00007 * 13 9 8 15 15 H 1.08006 * 120.00128 * 359.97438 * 14 13 9 16 16 C 1.37877 * 120.00179 * 179.72182 * 14 13 9 17 17 N 1.31517 * 119.99551 * 0.27944 * 16 14 13 18 18 Si 1.86790 * 120.00310 * 180.27149 * 16 14 13 19 19 H 1.48505 * 109.46981 * 60.00497 * 18 16 14 20 20 H 1.48500 * 109.47488 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47651 * 300.00495 * 18 16 14 22 22 C 1.38773 * 120.01522 * 359.45013 * 6 5 4 23 23 C 1.38684 * 119.91592 * 0.27547 * 22 6 5 24 24 N 1.40108 * 120.05295 * 179.97438 * 23 22 6 25 25 C 1.34782 * 120.00044 * 24.80509 * 24 23 22 26 26 C 1.50699 * 119.99796 * 185.52886 * 25 24 23 27 27 O 1.21297 * 119.99916 * 5.54395 * 25 24 23 28 28 H 1.09002 * 109.47206 * 300.00346 * 1 2 3 29 29 H 1.09000 * 109.46915 * 60.00037 * 1 2 3 30 30 H 1.09003 * 109.47087 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.95587 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.95073 * 180.27712 * 5 4 3 33 33 H 0.96991 * 120.00505 * 179.73183 * 7 6 5 34 34 H 1.08997 * 109.47159 * 60.00143 * 8 7 6 35 35 H 1.09007 * 109.46916 * 300.00451 * 8 7 6 36 36 H 1.09001 * 109.47070 * 54.99825 * 13 9 8 37 37 H 1.09002 * 109.47073 * 294.99591 * 13 9 8 38 38 H 0.97005 * 120.00050 * 179.97438 * 17 16 14 39 39 H 1.08001 * 120.04287 * 180.25244 * 22 6 5 40 40 H 0.97001 * 120.00034 * 204.81834 * 24 23 22 41 41 H 1.09004 * 109.46836 * 60.00766 * 26 25 24 42 42 H 1.09003 * 109.47179 * 180.02562 * 26 25 24 43 43 H 1.08992 * 109.47617 * 300.00687 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2124 0.0000 4 6 1.2925 2.3743 0.0005 5 6 1.9182 3.6066 0.0067 6 6 3.3050 3.6837 0.0009 7 7 3.9361 4.9325 0.0015 8 6 3.1341 6.1586 0.0021 9 6 4.0620 7.3750 0.0020 10 1 4.7513 7.3062 0.8435 11 6 4.8254 7.4097 -1.2561 12 7 5.4154 7.4368 -2.2261 13 6 3.2288 8.6521 0.1283 14 6 4.1470 9.8407 0.2517 15 1 5.2177 9.6994 0.2415 16 6 3.6202 11.1091 0.3724 17 7 2.3164 11.2812 0.3854 18 14 4.7583 12.5832 0.5178 19 1 5.6184 12.6655 -0.6901 20 1 3.9497 13.8232 0.6355 21 1 5.6116 12.4329 1.7238 22 6 4.0648 2.5224 0.0004 23 6 3.4376 1.2855 -0.0001 24 7 4.2019 0.1113 -0.0012 25 6 5.4577 0.1241 0.4880 26 6 6.3234 -1.1041 0.3739 27 8 5.8911 1.1243 1.0202 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2140 2.3171 0.0014 32 1 1.3280 4.5111 0.0117 33 1 4.9045 4.9866 0.0014 34 1 2.5052 6.1810 0.8921 35 1 2.5051 6.1817 -0.8879 36 1 2.5970 8.5875 1.0141 37 1 2.6031 8.7667 -0.7568 38 1 1.9457 12.1735 0.4707 39 1 5.1431 2.5819 0.0000 40 1 3.8273 -0.7109 -0.3541 41 1 6.4530 -1.3609 -0.6775 42 1 7.2968 -0.9055 0.8224 43 1 5.8465 -1.9344 0.8946 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732916248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:20 Heat of formation + Delta-G solvation = -24.263135 kcal Electronic energy + Delta-G solvation = -25269.704392 eV Core-core repulsion = 21508.192200 eV Total energy + Delta-G solvation = -3761.512192 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.85849 -39.36820 -38.21736 -36.81244 -35.34317 -34.31148 -33.37715 -31.66684 -31.12038 -29.20577 -28.68056 -27.15757 -26.12482 -23.89682 -22.87437 -21.90447 -21.40339 -20.44096 -18.55720 -17.61616 -17.16680 -16.95801 -16.52599 -16.03086 -15.79151 -15.67600 -15.36383 -14.88708 -14.54248 -14.36145 -13.94466 -13.71932 -13.31883 -13.21580 -13.05389 -12.97319 -12.75170 -12.52065 -12.41741 -12.23383 -12.06170 -11.99066 -11.45611 -11.32376 -11.21199 -11.06527 -10.79656 -10.69668 -10.62219 -10.34884 -9.87749 -9.67142 -9.39722 -9.31774 -8.49199 -8.21057 -6.98562 -6.13728 -4.17431 1.27667 1.62214 2.45521 2.85013 3.20803 3.29202 3.33537 3.36888 3.50149 3.54762 3.70041 3.91236 4.37912 4.48119 4.69239 4.78758 4.90131 4.91222 4.99218 5.00832 5.15116 5.24404 5.27775 5.29911 5.39218 5.44529 5.56582 5.63437 5.74858 5.84887 6.00073 6.16440 6.28114 6.34939 6.38969 6.44380 6.69831 7.21700 7.27918 7.35652 7.44473 7.52826 7.80572 7.88484 7.93884 8.16781 8.34463 8.86355 9.48361 10.97053 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017881 B = 0.002578 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.573100 B =10857.485741 C =11982.090041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.328 6.328 3 C 0.029 3.971 4 C -0.135 4.135 5 C -0.178 4.178 6 C 0.215 3.785 7 N -0.745 5.745 8 C 0.132 3.868 9 C -0.003 4.003 10 H 0.108 0.892 11 C 0.239 3.761 12 N -0.467 5.467 13 C 0.035 3.965 14 C -0.530 4.530 15 H 0.056 0.944 16 C 0.064 3.936 17 N -0.891 5.891 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.177 4.177 23 C 0.165 3.835 24 N -0.663 5.663 25 C 0.506 3.494 26 C -0.172 4.172 27 O -0.523 6.523 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.399 0.601 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.028 0.972 38 H 0.264 0.736 39 H 0.149 0.851 40 H 0.414 0.586 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.961 -27.239 0.953 27.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.243 6.243 3 C -0.018 4.018 4 C -0.155 4.155 5 C -0.201 4.201 6 C 0.110 3.890 7 N -0.375 5.375 8 C 0.007 3.993 9 C -0.025 4.025 10 H 0.126 0.874 11 C -0.078 4.078 12 N -0.144 5.144 13 C -0.004 4.004 14 C -0.568 4.568 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.201 4.201 23 C 0.070 3.930 24 N -0.307 5.307 25 C 0.294 3.706 26 C -0.232 4.232 27 O -0.398 6.398 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.234 0.766 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.166 0.834 40 H 0.250 0.750 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.883 -26.410 -0.123 26.477 hybrid contribution 0.161 0.734 0.247 0.791 sum -1.722 -25.675 0.124 25.733 Atomic orbital electron populations 1.22936 0.78754 1.03302 1.01247 1.85916 1.20988 1.26755 1.90601 1.18308 0.89982 0.84804 1.08754 1.20754 0.99377 0.91218 1.04130 1.20510 0.92577 0.97789 1.09243 1.17574 0.91484 0.85503 0.94395 1.44868 1.08435 1.02211 1.81942 1.21520 0.93743 0.81673 1.02349 1.19482 0.96377 0.98186 0.88472 0.87387 1.29086 0.92881 0.91370 0.94504 1.81023 1.10745 1.10393 1.12231 1.19147 0.94631 0.87623 0.98984 1.21076 0.92909 0.91330 1.51456 0.92530 1.24942 0.95061 0.99046 0.94829 1.69924 1.10537 1.22845 1.49576 0.86634 0.80715 0.81802 0.78823 1.20241 1.21137 1.20004 1.20585 1.01113 0.88774 1.09675 1.16692 0.86593 0.86344 1.03371 1.43417 1.14313 1.11568 1.61411 1.20986 0.81709 0.90630 0.77252 1.21923 1.00655 0.95913 1.04706 1.90728 1.72744 1.34769 1.41603 0.92895 0.92919 0.88779 0.85314 0.85276 0.76586 0.90198 0.91686 0.93978 0.95334 0.92652 0.83390 0.75040 0.89107 0.88593 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.33 -3.26 9.91 -19.96 -0.20 -3.46 16 3 C 0.03 0.34 6.70 -39.09 -0.26 0.08 16 4 C -0.13 -1.54 9.03 -39.49 -0.36 -1.90 16 5 C -0.18 -2.28 9.31 -39.35 -0.37 -2.64 16 6 C 0.22 3.04 6.65 -83.72 -0.56 2.48 16 7 N -0.74 -10.56 5.53 -58.60 -0.32 -10.89 16 8 C 0.13 1.93 4.28 -4.04 -0.02 1.91 16 9 C 0.00 -0.06 2.26 -93.41 -0.21 -0.27 16 10 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 11 C 0.24 4.80 13.45 -20.77 -0.28 4.52 16 12 N -0.47 -10.27 18.54 42.14 0.78 -9.49 16 13 C 0.03 0.78 4.42 -27.88 -0.12 0.66 16 14 C -0.53 -13.88 8.60 -34.44 -0.30 -14.17 16 15 H 0.06 1.47 7.59 -52.48 -0.40 1.08 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 18 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 C -0.18 -2.52 8.56 -39.22 -0.34 -2.86 16 23 C 0.17 2.11 6.44 -83.52 -0.54 1.58 16 24 N -0.66 -6.60 5.28 -9.76 -0.05 -6.65 16 25 C 0.51 5.28 7.75 -10.98 -0.09 5.20 16 26 C -0.17 -0.95 10.32 36.01 0.37 -0.58 16 27 O -0.52 -7.76 14.25 5.54 0.08 -7.69 16 28 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 29 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.13 1.15 6.29 -52.49 -0.33 0.82 16 32 H 0.13 1.53 6.72 -52.48 -0.35 1.18 16 33 H 0.40 5.63 8.23 -40.82 -0.34 5.29 16 34 H 0.08 1.07 7.94 -51.93 -0.41 0.66 16 35 H 0.06 0.96 7.96 -51.93 -0.41 0.54 16 36 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.15 2.27 5.79 -52.49 -0.30 1.97 16 40 H 0.41 2.94 8.34 -40.82 -0.34 2.60 16 41 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.10 0.55 8.12 -51.93 -0.42 0.13 16 43 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 370.15 15.07 5.58 5.58 Total: -1.00 -33.34 370.15 -6.36 -39.69 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.77 Total: 4.32 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -2.16 Total: -3.15 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 1.14 Total: -51.46 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -0.12 Total: -11.14 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.34 -6.36 -39.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732916248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.431 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds