Wall clock time and date at job start Tue Mar 31 2020 11:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36071 * 116.99842 * 2 1 4 4 C 1.38523 * 120.01075 * 0.02562 * 3 2 1 5 5 C 1.38210 * 120.08754 * 179.70239 * 4 3 2 6 6 C 1.38888 * 120.10101 * 0.54994 * 5 4 3 7 7 N 1.39926 * 119.99072 * 179.72811 * 6 5 4 8 8 C 1.46505 * 120.00166 * 359.72315 * 7 6 5 9 9 C 1.52995 * 109.47447 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.46811 * 304.99922 * 9 8 7 11 11 C 1.47197 * 109.47159 * 64.99894 * 9 8 7 12 12 N 8.72660 * 117.18171 * 343.33610 * 2 1 3 13 13 C 1.53002 * 109.47155 * 185.00070 * 9 8 7 14 14 C 1.50702 * 109.46947 * 175.00007 * 13 9 8 15 15 H 1.08006 * 120.00128 * 359.97438 * 14 13 9 16 16 C 1.37877 * 120.00179 * 179.72182 * 14 13 9 17 17 N 1.31517 * 119.99551 * 0.27944 * 16 14 13 18 18 Si 1.86790 * 120.00310 * 180.27149 * 16 14 13 19 19 H 1.48505 * 109.46981 * 60.00497 * 18 16 14 20 20 H 1.48500 * 109.47488 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47651 * 300.00495 * 18 16 14 22 22 C 1.38773 * 120.01522 * 359.45013 * 6 5 4 23 23 C 1.38684 * 119.91592 * 0.27547 * 22 6 5 24 24 N 1.40108 * 120.05295 * 179.97438 * 23 22 6 25 25 C 1.34782 * 120.00044 * 24.80509 * 24 23 22 26 26 C 1.50699 * 119.99796 * 185.52886 * 25 24 23 27 27 O 1.21297 * 119.99916 * 5.54395 * 25 24 23 28 28 H 1.09002 * 109.47206 * 300.00346 * 1 2 3 29 29 H 1.09000 * 109.46915 * 60.00037 * 1 2 3 30 30 H 1.09003 * 109.47087 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.95587 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.95073 * 180.27712 * 5 4 3 33 33 H 0.96991 * 120.00505 * 179.73183 * 7 6 5 34 34 H 1.08997 * 109.47159 * 60.00143 * 8 7 6 35 35 H 1.09007 * 109.46916 * 300.00451 * 8 7 6 36 36 H 1.09001 * 109.47070 * 54.99825 * 13 9 8 37 37 H 1.09002 * 109.47073 * 294.99591 * 13 9 8 38 38 H 0.97005 * 120.00050 * 179.97438 * 17 16 14 39 39 H 1.08001 * 120.04287 * 180.25244 * 22 6 5 40 40 H 0.97001 * 120.00034 * 204.81834 * 24 23 22 41 41 H 1.09004 * 109.46836 * 60.00766 * 26 25 24 42 42 H 1.09003 * 109.47179 * 180.02562 * 26 25 24 43 43 H 1.08992 * 109.47617 * 300.00687 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2124 0.0000 4 6 1.2925 2.3743 0.0005 5 6 1.9182 3.6066 0.0067 6 6 3.3050 3.6837 0.0009 7 7 3.9361 4.9325 0.0015 8 6 3.1341 6.1586 0.0021 9 6 4.0620 7.3750 0.0020 10 1 4.7513 7.3062 0.8435 11 6 4.8254 7.4097 -1.2561 12 7 5.4154 7.4368 -2.2261 13 6 3.2288 8.6521 0.1283 14 6 4.1470 9.8407 0.2517 15 1 5.2177 9.6994 0.2415 16 6 3.6202 11.1091 0.3724 17 7 2.3164 11.2812 0.3854 18 14 4.7583 12.5832 0.5178 19 1 5.6184 12.6655 -0.6901 20 1 3.9497 13.8232 0.6355 21 1 5.6116 12.4329 1.7238 22 6 4.0648 2.5224 0.0004 23 6 3.4376 1.2855 -0.0001 24 7 4.2019 0.1113 -0.0012 25 6 5.4577 0.1241 0.4880 26 6 6.3234 -1.1041 0.3739 27 8 5.8911 1.1243 1.0202 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2140 2.3171 0.0014 32 1 1.3280 4.5111 0.0117 33 1 4.9045 4.9866 0.0014 34 1 2.5052 6.1810 0.8921 35 1 2.5051 6.1817 -0.8879 36 1 2.5970 8.5875 1.0141 37 1 2.6031 8.7667 -0.7568 38 1 1.9457 12.1735 0.4707 39 1 5.1431 2.5819 0.0000 40 1 3.8273 -0.7109 -0.3541 41 1 6.4530 -1.3609 -0.6775 42 1 7.2968 -0.9055 0.8224 43 1 5.8465 -1.9344 0.8946 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732916248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:19 Heat of formation + Delta-G solvation = -46.573996 kcal Electronic energy + Delta-G solvation = -25270.671864 eV Core-core repulsion = 21508.192200 eV Total energy + Delta-G solvation = -3762.479664 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.73222 -40.21939 -39.31798 -38.11961 -36.45924 -35.71272 -34.94272 -33.24417 -31.87668 -30.28247 -29.39920 -28.32571 -27.29666 -25.19800 -24.04963 -23.47362 -22.37623 -21.32556 -19.43450 -18.71276 -18.47475 -18.25224 -17.91337 -16.95404 -16.85367 -16.57321 -16.41899 -16.16684 -15.78447 -15.38430 -15.11975 -14.78464 -14.53740 -14.51494 -14.29906 -14.03298 -13.85486 -13.58079 -13.43777 -13.37038 -13.19160 -13.05847 -12.98881 -12.77020 -12.53014 -12.43648 -12.19186 -12.01119 -11.94331 -11.61218 -11.50348 -11.23497 -10.77164 -10.55813 -10.34379 -9.16801 -8.20724 -7.97750 -6.28723 0.31969 0.66656 1.40749 1.41972 1.48982 1.65054 1.88675 1.91888 2.10256 2.38334 2.44389 2.62423 2.94486 3.12700 3.18028 3.81676 3.93780 3.98899 4.18569 4.29979 4.38024 4.47448 4.51295 4.53103 4.62544 4.66020 4.68580 4.74182 4.84007 4.85619 4.90749 4.95766 5.13540 5.32955 5.39472 5.44998 5.47778 5.59264 5.74747 5.77595 6.15860 6.35562 6.48465 6.58487 6.68957 6.80020 6.85942 7.17129 7.39703 8.89936 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017881 B = 0.002578 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.573100 B =10857.485741 C =11982.090041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.333 6.333 3 C 0.033 3.967 4 C -0.134 4.134 5 C -0.185 4.185 6 C 0.198 3.802 7 N -0.748 5.748 8 C 0.145 3.855 9 C 0.010 3.990 10 H 0.125 0.875 11 C 0.251 3.749 12 N -0.501 5.501 13 C 0.041 3.959 14 C -0.542 4.542 15 H 0.053 0.947 16 C 0.014 3.986 17 N -0.921 5.921 18 Si 0.947 3.053 19 H -0.282 1.282 20 H -0.281 1.281 21 H -0.264 1.264 22 C -0.193 4.193 23 C 0.151 3.849 24 N -0.653 5.653 25 C 0.498 3.502 26 C -0.162 4.162 27 O -0.574 6.574 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.119 0.881 31 H 0.156 0.844 32 H 0.138 0.862 33 H 0.397 0.603 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.007 0.993 38 H 0.265 0.735 39 H 0.131 0.869 40 H 0.428 0.572 41 H 0.114 0.886 42 H 0.092 0.908 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.689 -29.234 1.300 29.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.247 6.247 3 C -0.015 4.015 4 C -0.153 4.153 5 C -0.208 4.208 6 C 0.095 3.905 7 N -0.379 5.379 8 C 0.020 3.980 9 C -0.012 4.012 10 H 0.143 0.857 11 C -0.066 4.066 12 N -0.179 5.179 13 C 0.002 3.998 14 C -0.580 4.580 15 H 0.072 0.928 16 C -0.186 4.186 17 N -0.560 5.560 18 Si 0.773 3.227 19 H -0.208 1.208 20 H -0.206 1.206 21 H -0.189 1.189 22 C -0.218 4.218 23 C 0.055 3.945 24 N -0.299 5.299 25 C 0.289 3.711 26 C -0.221 4.221 27 O -0.454 6.454 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.137 0.863 31 H 0.174 0.826 32 H 0.156 0.844 33 H 0.232 0.768 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.025 0.975 38 H 0.074 0.926 39 H 0.148 0.852 40 H 0.266 0.734 41 H 0.133 0.867 42 H 0.111 0.889 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.629 -28.463 0.215 28.585 hybrid contribution 0.313 1.228 0.128 1.274 sum -2.316 -27.235 0.343 27.336 Atomic orbital electron populations 1.23250 0.76780 1.05264 1.01891 1.85920 1.22950 1.25617 1.90254 1.18389 0.89798 0.85745 1.07554 1.21069 1.00780 0.90530 1.02960 1.20705 0.92067 0.98849 1.09198 1.17708 0.92166 0.85165 0.95507 1.44745 1.08230 1.02154 1.82742 1.21343 0.92890 0.80561 1.03185 1.19395 0.96318 0.97567 0.87929 0.85703 1.29513 0.92214 0.90331 0.94521 1.81021 1.11992 1.11497 1.13363 1.18958 0.94297 0.88672 0.97853 1.21506 0.93360 0.92719 1.50437 0.92830 1.25673 0.96290 1.01652 0.94962 1.70012 1.11833 1.23362 1.50838 0.85773 0.79083 0.79111 0.78755 1.20773 1.20649 1.18904 1.20533 1.00435 0.89808 1.11060 1.16875 0.87574 0.86806 1.03249 1.43443 1.14172 1.11351 1.60929 1.21946 0.81840 0.91409 0.75903 1.21948 0.99463 0.94053 1.06618 1.90708 1.73653 1.37032 1.43966 0.92332 0.92104 0.86320 0.82631 0.84399 0.76841 0.88532 0.91716 0.93955 0.97455 0.92630 0.85161 0.73365 0.86735 0.88926 0.86494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -5.81 9.91 -94.35 -0.93 -6.75 16 3 C 0.03 0.73 6.70 22.59 0.15 0.88 16 4 C -0.13 -2.81 9.03 22.33 0.20 -2.61 16 5 C -0.18 -4.54 9.31 22.42 0.21 -4.33 16 6 C 0.20 5.60 6.65 38.13 0.25 5.85 16 7 N -0.75 -21.21 5.53 -339.32 -1.88 -23.09 16 8 C 0.15 4.14 4.28 86.38 0.37 4.51 16 9 C 0.01 0.34 2.26 -12.60 -0.03 0.31 16 10 H 0.13 4.01 8.14 -2.39 -0.02 3.99 16 11 C 0.25 10.08 13.45 89.45 1.20 11.29 16 12 N -0.50 -22.22 18.54 20.00 0.37 -21.85 16 13 C 0.04 1.84 4.42 29.85 0.13 1.97 16 14 C -0.54 -28.36 8.60 25.60 0.22 -28.14 16 15 H 0.05 2.78 7.59 -2.91 -0.02 2.76 16 16 C 0.01 0.74 5.46 84.65 0.46 1.20 16 17 N -0.92 -52.25 13.29 21.45 0.28 -51.96 16 18 Si 0.95 43.31 29.54 68.60 2.03 45.34 16 19 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 21 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 22 C -0.19 -5.66 8.56 22.50 0.19 -5.46 16 23 C 0.15 3.80 6.44 38.17 0.25 4.05 16 24 N -0.65 -12.45 5.28 -303.18 -1.60 -14.06 16 25 C 0.50 10.21 7.75 87.66 0.68 10.88 16 26 C -0.16 -1.47 10.32 71.24 0.74 -0.73 16 27 O -0.57 -17.65 14.25 -3.08 -0.04 -17.70 16 28 H 0.06 0.55 7.66 -2.39 -0.02 0.53 16 29 H 0.06 0.54 7.66 -2.39 -0.02 0.52 16 30 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.16 2.32 6.29 -2.91 -0.02 2.30 16 32 H 0.14 3.06 6.72 -2.91 -0.02 3.04 16 33 H 0.40 11.42 8.23 -92.71 -0.76 10.66 16 34 H 0.10 2.46 7.94 -2.39 -0.02 2.44 16 35 H 0.06 1.86 7.96 -2.38 -0.02 1.84 16 36 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 39 H 0.13 4.25 5.79 -2.91 -0.02 4.24 16 40 H 0.43 5.32 8.34 -92.71 -0.77 4.55 16 41 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 42 H 0.09 0.95 8.12 -2.39 -0.02 0.93 16 43 H 0.12 0.45 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -72.87 370.15 3.89 -68.98 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -0.47 Total: 20.07 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 6.14 Total: 1.01 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -2.82 Total: -110.95 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.98 Total: -24.45 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -72.87 3.89 -68.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732916248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.409 kcal (2) G-P(sol) polarization free energy of solvation -72.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds