Wall clock time and date at job start Tue Mar 31 2020 11:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34663 * 116.99940 * 2 1 4 4 O 1.21522 * 119.99680 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00037 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00060 * 5.07720 * 5 3 2 7 7 C 1.40200 * 119.99560 * 185.07425 * 5 3 2 8 8 C 1.38839 * 119.99779 * 292.42611 * 7 5 3 9 9 C 1.38072 * 120.00621 * 180.02562 * 8 7 5 10 10 C 1.38879 * 119.99494 * 0.25627 * 9 8 7 11 11 N 1.39909 * 120.00759 * 179.74790 * 10 9 8 12 12 C 1.46494 * 120.00248 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47347 * 180.02562 * 12 11 10 14 14 H 1.08995 * 109.47041 * 54.99768 * 13 12 11 15 15 C 1.47206 * 109.46820 * 295.00431 * 13 12 11 16 16 N 9.72792 * 165.74639 * 168.53602 * 3 1 2 17 17 C 1.52995 * 109.47137 * 175.00096 * 13 12 11 18 18 C 1.50706 * 109.46921 * 184.99586 * 17 13 12 19 19 H 1.08001 * 119.99993 * 0.02562 * 18 17 13 20 20 C 1.37876 * 119.99934 * 179.97438 * 18 17 13 21 21 N 1.31511 * 120.00189 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99904 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47423 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47281 * 120.00317 * 22 20 18 25 25 H 1.48498 * 109.47222 * 240.00355 * 22 20 18 26 26 C 1.38888 * 119.98650 * 359.53454 * 10 9 8 27 27 C 1.38063 * 119.99582 * 0.44499 * 26 10 9 28 28 H 1.09005 * 109.47284 * 60.00206 * 1 2 3 29 29 H 1.08999 * 109.47019 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47535 * 299.99846 * 1 2 3 31 31 H 1.09000 * 109.47060 * 269.99580 * 6 5 3 32 32 H 1.08998 * 109.47208 * 30.00026 * 6 5 3 33 33 H 1.09000 * 109.47153 * 149.99881 * 6 5 3 34 34 H 1.08003 * 119.99670 * 359.97438 * 8 7 5 35 35 H 1.08000 * 120.00043 * 179.97438 * 9 8 7 36 36 H 0.97007 * 119.99538 * 0.02562 * 11 10 9 37 37 H 1.08997 * 109.47125 * 300.00408 * 12 11 10 38 38 H 1.09001 * 109.47288 * 60.00306 * 12 11 10 39 39 H 1.08996 * 109.47340 * 304.99704 * 17 13 12 40 40 H 1.09001 * 109.47090 * 65.00402 * 17 13 12 41 41 H 0.96994 * 120.00302 * 179.97438 * 21 20 18 42 42 H 1.07998 * 119.99609 * 180.20742 * 26 10 9 43 43 H 1.08006 * 119.99641 * 179.76810 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1999 0.0000 4 8 1.4014 2.2190 0.0005 5 7 3.4092 1.2704 0.0005 6 6 4.2069 0.0468 -0.1112 7 6 4.0458 2.5149 0.1079 8 6 3.9476 3.4364 -0.9260 9 6 4.5749 4.6619 -0.8206 10 6 5.3085 4.9707 0.3174 11 7 5.9486 6.2104 0.4222 12 6 6.7221 6.5363 1.6229 13 6 7.3132 7.9406 1.4833 14 1 6.5142 8.6519 1.2746 15 6 8.2851 7.9561 0.3778 16 7 9.0338 7.9688 -0.4760 17 6 8.0156 8.3300 2.7855 18 6 8.4909 9.7571 2.6925 19 1 8.3097 10.3292 1.7945 20 6 9.1562 10.3327 3.7541 21 7 9.3764 9.6363 4.8477 22 14 9.7447 12.1018 3.6391 23 1 9.3747 12.6615 2.3143 24 1 9.1064 12.9066 4.7116 25 1 11.2203 12.1441 3.8002 26 6 5.4030 4.0505 1.3534 27 6 4.7753 2.8254 1.2477 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.4091 -0.3473 0.8848 32 1 3.6561 -0.6944 -0.6903 33 1 5.1490 0.2716 -0.6112 34 1 3.3811 3.1942 -1.8131 35 1 4.4987 5.3784 -1.6251 36 1 5.8797 6.8544 -0.3000 37 1 6.0699 6.5020 2.4955 38 1 7.5283 5.8127 1.7433 39 1 7.3183 8.2328 3.6176 40 1 8.8696 7.6726 2.9483 41 1 9.8447 10.0411 5.5945 42 1 5.9708 4.2918 2.2398 43 1 4.8518 2.1083 2.0517 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732919231.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:19 Heat of formation + Delta-G solvation = -22.434883 kcal Electronic energy + Delta-G solvation = -24907.838717 eV Core-core repulsion = 21146.405804 eV Total energy + Delta-G solvation = -3761.432913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.96714 -39.47736 -37.69921 -36.69125 -35.87300 -34.67077 -33.52823 -31.76440 -30.97962 -29.04135 -28.04173 -26.97727 -26.04437 -24.06940 -22.85820 -22.06554 -21.84218 -20.51654 -18.38155 -17.74984 -17.47225 -16.94738 -16.79083 -16.57483 -16.00664 -15.52277 -14.70591 -14.52947 -14.39552 -14.18088 -13.99249 -13.65230 -13.36609 -13.26177 -13.12603 -13.04306 -12.83632 -12.54356 -12.40400 -12.30720 -12.16456 -11.93920 -11.44374 -11.21178 -11.16142 -11.03800 -10.83948 -10.74263 -10.62106 -10.44203 -10.06196 -9.72810 -9.33648 -9.15836 -8.95982 -8.53721 -7.31513 -6.17617 -4.21491 1.37934 1.43437 1.94931 2.57560 3.23609 3.32172 3.34957 3.40770 3.46375 3.57011 3.63788 3.88829 4.34439 4.61687 4.82447 4.84486 4.86074 4.91714 4.95394 5.12148 5.17141 5.20507 5.21917 5.34788 5.42264 5.48339 5.54413 5.56258 5.83867 5.89570 5.92688 6.00174 6.19224 6.27743 6.34753 6.45876 6.51426 6.83006 7.04567 7.30711 7.34966 7.39561 7.74171 7.76731 8.08343 8.12201 8.27356 8.82756 9.44704 10.93162 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029608 B = 0.002064 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.459998 B =13560.093042 C =13811.298368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.371 6.371 3 C 0.645 3.355 4 O -0.558 6.558 5 N -0.545 5.545 6 C 0.086 3.914 7 C 0.071 3.929 8 C -0.049 4.049 9 C -0.190 4.190 10 C 0.232 3.768 11 N -0.744 5.744 12 C 0.129 3.871 13 C -0.003 4.003 14 H 0.108 0.892 15 C 0.237 3.763 16 N -0.466 5.466 17 C 0.033 3.967 18 C -0.529 4.529 19 H 0.058 0.942 20 C 0.063 3.937 21 N -0.889 5.889 22 Si 0.893 3.107 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.283 1.283 26 C -0.188 4.188 27 C -0.062 4.062 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.400 0.600 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.042 0.958 40 H 0.029 0.971 41 H 0.263 0.737 42 H 0.132 0.868 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.052 -20.658 -7.965 26.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.285 6.285 3 C 0.400 3.600 4 O -0.445 6.445 5 N -0.281 5.281 6 C -0.056 4.056 7 C -0.020 4.020 8 C -0.069 4.069 9 C -0.214 4.214 10 C 0.127 3.873 11 N -0.371 5.371 12 C 0.004 3.996 13 C -0.025 4.025 14 H 0.126 0.874 15 C -0.080 4.080 16 N -0.143 5.143 17 C -0.005 4.005 18 C -0.567 4.567 19 H 0.076 0.924 20 C -0.139 4.139 21 N -0.528 5.528 22 Si 0.720 3.280 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.209 1.209 26 C -0.212 4.212 27 C -0.083 4.083 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.235 0.765 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.149 0.851 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.015 -20.329 -8.894 26.245 hybrid contribution -0.017 1.269 0.146 1.277 sum -14.032 -19.060 -8.748 25.233 Atomic orbital electron populations 1.23200 0.74453 1.03401 1.02842 1.86241 1.24107 1.31048 1.87106 1.18162 0.83106 0.82174 0.76574 1.91032 1.63988 1.34850 1.54624 1.43788 1.01854 1.07104 1.75388 1.21855 0.96190 0.85288 1.02281 1.16967 1.02984 0.85928 0.96111 1.20816 0.96386 0.92640 0.97071 1.20438 1.04129 0.98226 0.98582 1.17928 0.90264 0.85816 0.93323 1.45025 1.55390 1.15242 1.21484 1.21580 0.94856 0.95526 0.87645 1.19480 0.93988 0.96200 0.92802 0.87378 1.29093 0.93826 0.92003 0.93039 1.81034 1.10592 1.09639 1.12988 1.19164 0.96007 0.97324 0.88017 1.21135 1.37462 0.97076 1.01064 0.92421 1.24952 0.95626 0.98100 0.95269 1.69934 1.41281 1.36722 1.04820 0.86516 0.78587 0.84672 0.78190 1.19705 1.20779 1.20926 1.20556 1.06724 0.93965 0.99920 1.20864 0.95989 0.96093 0.95324 0.91870 0.87977 0.91776 0.92235 0.90406 0.90415 0.86342 0.85822 0.76527 0.89979 0.91441 0.93935 0.95291 0.92722 0.85061 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.56 101.05 1.07 1.44 16 2 O -0.37 -3.64 9.45 -40.39 -0.38 -4.02 16 3 C 0.65 7.99 8.27 54.05 0.45 8.43 16 4 O -0.56 -8.69 15.71 -19.29 -0.30 -8.99 16 5 N -0.55 -5.92 2.93 -126.22 -0.37 -6.29 16 6 C 0.09 0.61 10.31 59.84 0.62 1.23 16 7 C 0.07 0.86 4.82 -83.58 -0.40 0.45 16 8 C -0.05 -0.60 9.33 -39.42 -0.37 -0.96 16 9 C -0.19 -2.28 9.89 -39.41 -0.39 -2.67 16 10 C 0.23 2.91 6.66 -83.69 -0.56 2.35 16 11 N -0.74 -9.27 5.53 -58.59 -0.32 -9.59 16 12 C 0.13 1.73 4.28 -4.04 -0.02 1.72 16 13 C 0.00 -0.04 2.26 -93.41 -0.21 -0.26 16 14 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 15 C 0.24 4.52 13.45 -20.77 -0.28 4.25 16 16 N -0.47 -9.78 18.54 42.14 0.78 -9.00 16 17 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 18 C -0.53 -13.55 8.60 -34.44 -0.30 -13.84 16 19 H 0.06 1.47 7.59 -52.49 -0.40 1.07 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -24.76 13.29 55.43 0.74 -24.03 16 22 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C -0.19 -2.26 9.31 -39.40 -0.37 -2.62 16 27 C -0.06 -0.71 9.85 -39.42 -0.39 -1.10 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.47 7.46 -51.93 -0.39 0.09 16 33 H 0.08 0.49 8.05 -51.93 -0.42 0.07 16 34 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.40 4.72 8.23 -40.82 -0.34 4.38 16 37 H 0.08 1.03 7.94 -51.93 -0.41 0.61 16 38 H 0.07 0.92 7.95 -51.93 -0.41 0.51 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 42 H 0.13 1.45 6.73 -52.49 -0.35 1.10 16 43 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 377.18 15.07 5.68 5.68 Total: -1.00 -32.46 377.18 -6.64 -39.10 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.08 Total: 0.71 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.37 Total: 0.61 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.82 Total: -48.91 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -0.68 Total: -13.01 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.46 -6.64 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732919231.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.668 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds