Wall clock time and date at job start Tue Mar 31 2020 11:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34663 * 116.99940 * 2 1 4 4 O 1.21522 * 119.99680 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00037 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00060 * 5.07720 * 5 3 2 7 7 C 1.40200 * 119.99560 * 185.07425 * 5 3 2 8 8 C 1.38839 * 119.99779 * 292.42611 * 7 5 3 9 9 C 1.38072 * 120.00621 * 180.02562 * 8 7 5 10 10 C 1.38879 * 119.99494 * 0.25627 * 9 8 7 11 11 N 1.39909 * 120.00759 * 179.74790 * 10 9 8 12 12 C 1.46494 * 120.00248 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47347 * 180.02562 * 12 11 10 14 14 H 1.08995 * 109.47041 * 54.99768 * 13 12 11 15 15 C 1.47206 * 109.46820 * 295.00431 * 13 12 11 16 16 N 9.72792 * 165.74639 * 168.53602 * 3 1 2 17 17 C 1.52995 * 109.47137 * 175.00096 * 13 12 11 18 18 C 1.50706 * 109.46921 * 184.99586 * 17 13 12 19 19 H 1.08001 * 119.99993 * 0.02562 * 18 17 13 20 20 C 1.37876 * 119.99934 * 179.97438 * 18 17 13 21 21 N 1.31511 * 120.00189 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99904 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47423 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47281 * 120.00317 * 22 20 18 25 25 H 1.48498 * 109.47222 * 240.00355 * 22 20 18 26 26 C 1.38888 * 119.98650 * 359.53454 * 10 9 8 27 27 C 1.38063 * 119.99582 * 0.44499 * 26 10 9 28 28 H 1.09005 * 109.47284 * 60.00206 * 1 2 3 29 29 H 1.08999 * 109.47019 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47535 * 299.99846 * 1 2 3 31 31 H 1.09000 * 109.47060 * 269.99580 * 6 5 3 32 32 H 1.08998 * 109.47208 * 30.00026 * 6 5 3 33 33 H 1.09000 * 109.47153 * 149.99881 * 6 5 3 34 34 H 1.08003 * 119.99670 * 359.97438 * 8 7 5 35 35 H 1.08000 * 120.00043 * 179.97438 * 9 8 7 36 36 H 0.97007 * 119.99538 * 0.02562 * 11 10 9 37 37 H 1.08997 * 109.47125 * 300.00408 * 12 11 10 38 38 H 1.09001 * 109.47288 * 60.00306 * 12 11 10 39 39 H 1.08996 * 109.47340 * 304.99704 * 17 13 12 40 40 H 1.09001 * 109.47090 * 65.00402 * 17 13 12 41 41 H 0.96994 * 120.00302 * 179.97438 * 21 20 18 42 42 H 1.07998 * 119.99609 * 180.20742 * 26 10 9 43 43 H 1.08006 * 119.99641 * 179.76810 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1999 0.0000 4 8 1.4014 2.2190 0.0005 5 7 3.4092 1.2704 0.0005 6 6 4.2069 0.0468 -0.1112 7 6 4.0458 2.5149 0.1079 8 6 3.9476 3.4364 -0.9260 9 6 4.5749 4.6619 -0.8206 10 6 5.3085 4.9707 0.3174 11 7 5.9486 6.2104 0.4222 12 6 6.7221 6.5363 1.6229 13 6 7.3132 7.9406 1.4833 14 1 6.5142 8.6519 1.2746 15 6 8.2851 7.9561 0.3778 16 7 9.0338 7.9688 -0.4760 17 6 8.0156 8.3300 2.7855 18 6 8.4909 9.7571 2.6925 19 1 8.3097 10.3292 1.7945 20 6 9.1562 10.3327 3.7541 21 7 9.3764 9.6363 4.8477 22 14 9.7447 12.1018 3.6391 23 1 9.3747 12.6615 2.3143 24 1 9.1064 12.9066 4.7116 25 1 11.2203 12.1441 3.8002 26 6 5.4030 4.0505 1.3534 27 6 4.7753 2.8254 1.2477 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.4091 -0.3473 0.8848 32 1 3.6561 -0.6944 -0.6903 33 1 5.1490 0.2716 -0.6112 34 1 3.3811 3.1942 -1.8131 35 1 4.4987 5.3784 -1.6251 36 1 5.8797 6.8544 -0.3000 37 1 6.0699 6.5020 2.4955 38 1 7.5283 5.8127 1.7433 39 1 7.3183 8.2328 3.6176 40 1 8.8696 7.6726 2.9483 41 1 9.8447 10.0411 5.5945 42 1 5.9708 4.2918 2.2398 43 1 4.8518 2.1083 2.0517 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732919231.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:18 Heat of formation + Delta-G solvation = -41.323897 kcal Electronic energy + Delta-G solvation = -24908.657806 eV Core-core repulsion = 21146.405804 eV Total energy + Delta-G solvation = -3762.252002 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.83004 -40.39321 -38.86203 -37.75744 -36.87892 -35.96044 -35.15846 -33.31257 -31.89326 -30.12282 -28.70738 -28.20602 -27.00832 -25.34913 -23.97960 -23.41169 -22.97891 -21.39421 -19.21797 -18.74379 -18.59890 -18.42796 -17.96953 -17.72123 -16.93042 -16.64253 -16.36673 -15.56914 -15.27885 -15.16980 -14.90024 -14.73458 -14.62004 -14.27390 -14.24791 -14.17391 -13.87008 -13.80817 -13.54827 -13.40055 -13.14205 -13.06446 -12.93588 -12.85369 -12.56742 -12.38951 -12.12661 -11.95111 -11.79200 -11.69832 -11.48733 -11.20739 -11.01388 -10.55860 -9.99212 -9.86655 -8.26125 -8.20313 -6.27968 0.46961 0.51987 1.17716 1.38920 1.42731 1.51919 1.66601 1.91735 1.94342 2.38744 2.50882 2.84052 3.06910 3.14077 3.19339 3.92435 4.01462 4.07454 4.23798 4.31522 4.36138 4.37581 4.46973 4.54693 4.61427 4.69359 4.69840 4.72939 4.84981 4.90114 4.92292 5.05851 5.12050 5.16798 5.39116 5.47027 5.56954 5.60678 5.62636 5.78366 5.92291 6.16769 6.21129 6.39186 6.71229 6.80119 6.87648 7.21065 7.40743 8.90587 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029608 B = 0.002064 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.459998 B =13560.093042 C =13811.298368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.367 6.367 3 C 0.641 3.359 4 O -0.598 6.598 5 N -0.545 5.545 6 C 0.082 3.918 7 C 0.063 3.937 8 C -0.060 4.060 9 C -0.193 4.193 10 C 0.221 3.779 11 N -0.743 5.743 12 C 0.141 3.859 13 C 0.011 3.989 14 H 0.129 0.871 15 C 0.250 3.750 16 N -0.500 5.500 17 C 0.038 3.962 18 C -0.538 4.538 19 H 0.055 0.945 20 C 0.012 3.988 21 N -0.921 5.921 22 Si 0.947 3.053 23 H -0.270 1.270 24 H -0.275 1.275 25 H -0.286 1.286 26 C -0.194 4.194 27 C -0.064 4.064 28 H 0.059 0.941 29 H 0.139 0.861 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.135 0.865 36 H 0.403 0.597 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.042 0.958 40 H 0.007 0.993 41 H 0.264 0.736 42 H 0.140 0.860 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.801 -21.576 -8.182 27.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.281 6.281 3 C 0.396 3.604 4 O -0.489 6.489 5 N -0.280 5.280 6 C -0.059 4.059 7 C -0.028 4.028 8 C -0.080 4.080 9 C -0.216 4.216 10 C 0.116 3.884 11 N -0.372 5.372 12 C 0.016 3.984 13 C -0.011 4.011 14 H 0.146 0.854 15 C -0.066 4.066 16 N -0.178 5.178 17 C -0.001 4.001 18 C -0.577 4.577 19 H 0.073 0.927 20 C -0.187 4.187 21 N -0.561 5.561 22 Si 0.773 3.227 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.212 1.212 26 C -0.217 4.217 27 C -0.084 4.084 28 H 0.078 0.922 29 H 0.157 0.843 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.137 0.863 35 H 0.153 0.847 36 H 0.239 0.761 37 H 0.115 0.885 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.025 0.975 41 H 0.073 0.927 42 H 0.158 0.842 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.764 -21.283 -9.127 27.463 hybrid contribution 0.168 1.465 0.192 1.487 sum -14.596 -19.818 -8.935 26.185 Atomic orbital electron populations 1.23513 0.72852 1.05715 1.02453 1.86256 1.25640 1.29519 1.86658 1.18383 0.83501 0.82329 0.76147 1.90998 1.65012 1.36263 1.56605 1.43952 1.01706 1.07805 1.74578 1.22074 0.96219 0.84078 1.03518 1.17172 1.02839 0.86532 0.96272 1.20936 0.96691 0.92978 0.97445 1.20583 1.03808 0.98396 0.98836 1.18024 0.90722 0.85868 0.93784 1.44860 1.55528 1.15521 1.21245 1.21385 0.95156 0.93205 0.88666 1.19377 0.93406 0.98836 0.89468 0.85376 1.29500 0.93410 0.90867 0.92854 1.81041 1.11501 1.11001 1.14217 1.18980 0.95530 0.95020 0.90532 1.21567 1.36686 0.98842 1.00567 0.92673 1.25680 0.96246 1.01492 0.95328 1.70019 1.42452 1.38150 1.05465 0.85668 0.77805 0.80929 0.78297 1.19425 1.20006 1.21238 1.20742 1.06765 0.94096 1.00107 1.21043 0.95512 0.96290 0.95537 0.92169 0.84265 0.92344 0.90834 0.89284 0.89527 0.86308 0.84709 0.76142 0.88481 0.91534 0.94010 0.97489 0.92709 0.84212 0.84214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.59 10.56 113.37 1.20 1.79 16 2 O -0.37 -6.71 9.45 -55.73 -0.53 -7.23 16 3 C 0.64 15.41 8.27 129.79 1.07 16.48 16 4 O -0.60 -18.67 15.71 19.77 0.31 -18.36 16 5 N -0.54 -11.17 2.93 -783.65 -2.30 -13.46 16 6 C 0.08 1.00 10.31 127.77 1.32 2.32 16 7 C 0.06 1.45 4.82 38.09 0.18 1.64 16 8 C -0.06 -1.43 9.33 22.37 0.21 -1.22 16 9 C -0.19 -4.44 9.89 22.38 0.22 -4.22 16 10 C 0.22 5.22 6.66 38.16 0.25 5.47 16 11 N -0.74 -17.28 5.53 -339.27 -1.88 -19.16 16 12 C 0.14 3.55 4.28 86.38 0.37 3.92 16 13 C 0.01 0.35 2.26 -12.60 -0.03 0.32 16 14 H 0.13 3.65 8.14 -2.39 -0.02 3.63 16 15 C 0.25 9.29 13.45 89.45 1.20 10.49 16 16 N -0.50 -20.71 18.54 20.00 0.37 -20.34 16 17 C 0.04 1.64 4.42 29.85 0.13 1.77 16 18 C -0.54 -27.26 8.60 25.60 0.22 -27.04 16 19 H 0.06 2.76 7.59 -2.91 -0.02 2.74 16 20 C 0.01 0.62 5.46 84.66 0.46 1.09 16 21 N -0.92 -51.37 13.29 21.45 0.28 -51.09 16 22 Si 0.95 42.47 29.54 68.60 2.03 44.50 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 26 C -0.19 -4.34 9.31 22.38 0.21 -4.13 16 27 C -0.06 -1.36 9.85 22.37 0.22 -1.14 16 28 H 0.06 0.77 8.14 -2.38 -0.02 0.76 16 29 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.90 7.46 -2.39 -0.02 0.88 16 33 H 0.09 0.91 8.05 -2.39 -0.02 0.90 16 34 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 36 H 0.40 8.85 8.23 -92.70 -0.76 8.09 16 37 H 0.10 2.21 7.94 -2.39 -0.02 2.19 16 38 H 0.07 1.71 7.95 -2.39 -0.02 1.69 16 39 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 42 H 0.14 2.83 6.73 -2.91 -0.02 2.81 16 43 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -69.14 377.18 5.80 -63.34 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.26 Total: 14.27 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 7.24 Total: 7.54 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -3.52 Total: -104.06 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.22 Total: -25.59 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -69.14 5.80 -63.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732919231.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.012 kcal (2) G-P(sol) polarization free energy of solvation -69.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds