Wall clock time and date at job start Tue Mar 31 2020 11:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 120.00192 * 2 1 4 4 C 1.50693 * 109.46976 * 89.99945 * 3 2 1 5 5 C 1.38289 * 119.92660 * 90.00198 * 4 3 2 6 6 C 1.38100 * 120.07658 * 179.97438 * 5 4 3 7 7 C 1.38906 * 119.92505 * 0.02562 * 6 5 4 8 8 N 1.39678 * 120.07817 * 179.97438 * 7 6 5 9 9 C 1.46500 * 120.00264 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.46949 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47753 * 305.00252 * 10 9 8 12 12 C 1.47204 * 109.47042 * 65.00020 * 10 9 8 13 13 N 9.75533 * 110.26413 * 53.31457 * 2 1 3 14 14 C 1.52996 * 109.47153 * 184.99976 * 10 9 8 15 15 C 1.50702 * 109.47159 * 175.00123 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.38910 * 119.85309 * 0.24735 * 7 6 5 24 24 C 1.38110 * 119.92265 * 359.49920 * 23 7 6 25 25 C 1.34775 * 119.99361 * 180.02562 * 2 1 3 26 26 O 1.21514 * 119.99764 * 179.97438 * 25 2 1 27 27 O 1.34638 * 120.00487 * 359.97438 * 25 2 1 28 28 H 1.09003 * 109.47136 * 89.99891 * 1 2 3 29 29 H 1.08990 * 109.47414 * 209.99857 * 1 2 3 30 30 H 1.08997 * 109.47034 * 330.00482 * 1 2 3 31 31 H 1.08999 * 109.46948 * 329.99800 * 3 2 1 32 32 H 1.08998 * 109.46652 * 209.99931 * 3 2 1 33 33 H 1.07999 * 119.95908 * 359.97438 * 5 4 3 34 34 H 1.08002 * 120.03616 * 179.97438 * 6 5 4 35 35 H 0.97002 * 119.99131 * 359.97438 * 8 7 6 36 36 H 1.08997 * 109.46786 * 59.99855 * 9 8 7 37 37 H 1.08996 * 109.47381 * 300.00053 * 9 8 7 38 38 H 1.09004 * 109.47066 * 55.00326 * 14 10 9 39 39 H 1.08994 * 109.47405 * 295.00156 * 14 10 9 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 41 41 H 1.07997 * 120.04136 * 179.72708 * 23 7 6 42 42 H 1.07997 * 119.96425 * 180.25307 * 24 23 7 43 43 H 0.96699 * 116.99949 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4208 5 6 3.6016 1.3036 2.0712 6 6 3.8352 1.7009 3.3731 7 6 2.9102 2.5028 4.0294 8 7 3.1429 2.9060 5.3463 9 6 2.1665 3.7523 6.0367 10 6 2.6589 4.0461 7.4551 11 1 2.8623 3.1076 7.9709 12 6 3.8920 4.8475 7.3903 13 7 4.8438 5.4673 7.3389 14 6 1.5844 4.8242 8.2171 15 6 2.0169 5.0069 9.6491 16 1 2.9638 4.6083 9.9824 17 6 1.2067 5.6885 10.5324 18 7 0.0540 6.1743 10.1266 19 14 1.7464 5.9216 12.3055 20 1 3.0260 6.6743 12.3386 21 1 0.7056 6.6811 13.0439 22 1 1.9362 4.5942 12.9438 23 6 1.7504 2.8983 3.3750 24 6 1.5256 2.5017 2.0713 25 6 2.1388 -1.1673 -0.0005 26 8 3.3539 -1.1673 -0.0010 27 8 1.4656 -2.3332 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6085 2.0284 -0.5139 32 1 3.1500 1.1383 -0.5138 33 1 4.3202 0.6797 1.5605 34 1 4.7356 1.3876 3.8806 35 1 3.9511 2.6256 5.8036 36 1 1.2079 3.2358 6.0849 37 1 2.0476 4.6887 5.4917 38 1 0.6460 4.2704 8.1889 39 1 1.4444 5.8002 7.7526 40 1 -0.5162 6.6535 10.7481 41 1 1.0271 3.5181 3.8839 42 1 0.6261 2.8122 1.5606 43 1 1.9922 -3.1442 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737485839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:20 Heat of formation + Delta-G solvation = -40.001145 kcal Electronic energy + Delta-G solvation = -24931.610444 eV Core-core repulsion = 21169.415801 eV Total energy + Delta-G solvation = -3762.194643 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.66511 -39.47310 -37.51560 -36.61896 -35.85976 -34.97574 -33.67957 -32.04315 -30.86684 -30.21035 -27.53969 -26.83217 -25.44978 -23.91608 -22.49435 -21.82937 -21.65193 -20.51633 -18.36527 -17.66448 -17.53519 -16.90443 -16.60512 -16.52899 -15.68305 -15.52768 -15.06323 -14.67343 -14.28290 -14.02993 -13.89573 -13.60289 -13.52708 -13.33872 -13.14622 -12.92776 -12.74125 -12.52935 -12.20503 -12.09197 -11.96079 -11.83303 -11.59177 -11.44336 -11.17354 -10.97879 -10.82916 -10.72596 -10.65820 -10.43475 -9.92312 -9.72550 -9.37178 -9.11704 -8.86521 -8.53564 -7.32145 -6.18045 -4.22097 1.42929 1.52158 2.26625 2.59049 3.25633 3.30439 3.33015 3.41106 3.46237 3.58932 3.87555 4.06605 4.33874 4.61429 4.75265 4.79903 4.85815 5.03661 5.09089 5.15421 5.20110 5.23471 5.38139 5.43091 5.50986 5.54268 5.67175 5.82459 5.91113 6.05818 6.10240 6.17550 6.28886 6.30713 6.40442 6.42641 6.68540 6.90999 7.00670 7.29662 7.38691 7.40359 7.75806 7.77289 8.10440 8.11639 8.27343 8.81583 9.43942 10.92674 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024850 B = 0.002137 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.486611 B =13101.156912 C =13505.129934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.591 5.591 3 C 0.181 3.819 4 C -0.187 4.187 5 C -0.044 4.044 6 C -0.205 4.205 7 C 0.233 3.767 8 N -0.745 5.745 9 C 0.130 3.870 10 C -0.002 4.002 11 H 0.108 0.892 12 C 0.237 3.763 13 N -0.466 5.466 14 C 0.035 3.965 15 C -0.531 4.531 16 H 0.056 0.944 17 C 0.064 3.936 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.202 4.202 24 C -0.053 4.053 25 C 0.663 3.337 26 O -0.578 6.578 27 O -0.528 6.528 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.399 0.601 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.042 0.958 39 H 0.029 0.971 40 H 0.264 0.736 41 H 0.125 0.875 42 H 0.117 0.883 43 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.889 -14.054 -21.605 25.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.331 5.331 3 C 0.061 3.939 4 C -0.190 4.190 5 C -0.064 4.064 6 C -0.227 4.227 7 C 0.127 3.873 8 N -0.373 5.373 9 C 0.005 3.995 10 C -0.024 4.024 11 H 0.126 0.874 12 C -0.080 4.080 13 N -0.142 5.142 14 C -0.004 4.004 15 C -0.569 4.569 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.225 4.225 24 C -0.073 4.073 25 C 0.416 3.584 26 O -0.467 6.467 27 O -0.338 6.338 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.233 0.767 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.143 0.857 42 H 0.135 0.865 43 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -0.668 -12.575 -21.533 24.945 hybrid contribution 0.419 -0.591 1.466 1.635 sum -0.249 -13.166 -20.068 24.002 Atomic orbital electron populations 1.21781 0.78488 1.03817 1.01882 1.46759 1.07298 1.03233 1.75858 1.20277 0.97613 0.82097 0.93924 1.19755 0.97355 1.04789 0.97150 1.20838 0.96092 0.95977 0.93448 1.20599 1.00822 1.05010 0.96292 1.17921 0.93225 0.91555 0.84567 1.44982 1.25021 1.55962 1.11318 1.21551 0.92273 0.94459 0.91195 1.19477 0.88990 0.98255 0.95706 0.87445 1.29150 0.93776 0.93394 0.91714 1.81092 1.12930 1.10219 1.09979 1.19148 0.91649 0.95311 0.94293 1.21061 1.04917 1.36537 0.94374 0.92545 1.24947 0.94830 0.95137 0.98957 1.69920 1.10603 1.36598 1.35672 0.86631 0.78410 0.78464 0.84445 1.20226 1.21101 1.20006 1.20669 0.98446 1.07350 0.96057 1.20721 0.97440 0.95353 0.93761 1.17761 0.83435 0.81233 0.75933 1.91032 1.12487 1.86959 1.56240 1.84184 1.44807 1.16291 1.88512 0.92528 0.90498 0.90629 0.89283 0.89090 0.85892 0.86455 0.76656 0.90115 0.91545 0.93985 0.95316 0.92605 0.85690 0.86479 0.71473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.50 10.44 59.85 0.62 1.12 16 2 N -0.59 -5.13 2.86 -188.81 -0.54 -5.67 16 3 C 0.18 1.54 5.53 -5.20 -0.03 1.51 16 4 C -0.19 -1.97 5.46 -104.59 -0.57 -2.54 16 5 C -0.04 -0.53 9.69 -39.61 -0.38 -0.91 16 6 C -0.20 -2.55 9.90 -39.38 -0.39 -2.94 16 7 C 0.23 2.99 6.65 -83.79 -0.56 2.43 16 8 N -0.75 -9.63 5.52 -58.64 -0.32 -9.96 16 9 C 0.13 1.80 4.28 -4.04 -0.02 1.78 16 10 C 0.00 -0.04 2.26 -93.41 -0.21 -0.25 16 11 H 0.11 1.68 8.14 -51.93 -0.42 1.25 16 12 C 0.24 4.59 13.46 -20.73 -0.28 4.31 16 13 N -0.47 -9.95 18.54 42.19 0.78 -9.17 16 14 C 0.03 0.76 4.42 -27.88 -0.12 0.63 16 15 C -0.53 -13.63 8.60 -34.44 -0.30 -13.93 16 16 H 0.06 1.44 7.59 -52.49 -0.40 1.04 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -24.79 13.29 55.43 0.74 -24.05 16 19 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 C -0.20 -2.41 9.31 -39.38 -0.37 -2.78 16 24 C -0.05 -0.55 9.69 -39.61 -0.38 -0.93 16 25 C 0.66 6.85 8.77 54.05 0.47 7.32 16 26 O -0.58 -7.68 16.23 -19.28 -0.31 -8.00 16 27 O -0.53 -3.92 12.25 -40.32 -0.49 -4.41 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.48 7.37 -51.93 -0.38 0.09 16 30 H 0.07 0.37 8.07 -51.93 -0.42 -0.04 16 31 H 0.09 0.53 8.01 -51.93 -0.42 0.12 16 32 H 0.09 0.85 7.36 -51.93 -0.38 0.46 16 33 H 0.12 1.49 7.57 -52.49 -0.40 1.10 16 34 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.40 4.95 8.23 -40.82 -0.34 4.61 16 36 H 0.08 1.03 7.94 -51.93 -0.41 0.61 16 37 H 0.07 0.94 7.96 -51.93 -0.41 0.53 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.13 1.41 6.73 -52.49 -0.35 1.05 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.43 1.38 9.11 45.56 0.42 1.79 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -32.92 376.40 -7.27 -40.20 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.17 Total: 3.11 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -2.61 Total: -3.54 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.66 Total: -48.85 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.81 Total: -12.41 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.92 -7.27 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737485839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.195 kcal (2) G-P(sol) polarization free energy of solvation -32.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds