Wall clock time and date at job start Tue Mar 31 2020 11:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 120.00192 * 2 1 4 4 C 1.50693 * 109.46976 * 89.99945 * 3 2 1 5 5 C 1.38289 * 119.92660 * 90.00198 * 4 3 2 6 6 C 1.38100 * 120.07658 * 179.97438 * 5 4 3 7 7 C 1.38906 * 119.92505 * 0.02562 * 6 5 4 8 8 N 1.39678 * 120.07817 * 179.97438 * 7 6 5 9 9 C 1.46500 * 120.00264 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.46949 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47753 * 305.00252 * 10 9 8 12 12 C 1.47204 * 109.47042 * 65.00020 * 10 9 8 13 13 N 9.75533 * 110.26413 * 53.31457 * 2 1 3 14 14 C 1.52996 * 109.47153 * 184.99976 * 10 9 8 15 15 C 1.50702 * 109.47159 * 175.00123 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.38910 * 119.85309 * 0.24735 * 7 6 5 24 24 C 1.38110 * 119.92265 * 359.49920 * 23 7 6 25 25 C 1.34775 * 119.99361 * 180.02562 * 2 1 3 26 26 O 1.21514 * 119.99764 * 179.97438 * 25 2 1 27 27 O 1.34638 * 120.00487 * 359.97438 * 25 2 1 28 28 H 1.09003 * 109.47136 * 89.99891 * 1 2 3 29 29 H 1.08990 * 109.47414 * 209.99857 * 1 2 3 30 30 H 1.08997 * 109.47034 * 330.00482 * 1 2 3 31 31 H 1.08999 * 109.46948 * 329.99800 * 3 2 1 32 32 H 1.08998 * 109.46652 * 209.99931 * 3 2 1 33 33 H 1.07999 * 119.95908 * 359.97438 * 5 4 3 34 34 H 1.08002 * 120.03616 * 179.97438 * 6 5 4 35 35 H 0.97002 * 119.99131 * 359.97438 * 8 7 6 36 36 H 1.08997 * 109.46786 * 59.99855 * 9 8 7 37 37 H 1.08996 * 109.47381 * 300.00053 * 9 8 7 38 38 H 1.09004 * 109.47066 * 55.00326 * 14 10 9 39 39 H 1.08994 * 109.47405 * 295.00156 * 14 10 9 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 41 41 H 1.07997 * 120.04136 * 179.72708 * 23 7 6 42 42 H 1.07997 * 119.96425 * 180.25307 * 24 23 7 43 43 H 0.96699 * 116.99949 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4208 5 6 3.6016 1.3036 2.0712 6 6 3.8352 1.7009 3.3731 7 6 2.9102 2.5028 4.0294 8 7 3.1429 2.9060 5.3463 9 6 2.1665 3.7523 6.0367 10 6 2.6589 4.0461 7.4551 11 1 2.8623 3.1076 7.9709 12 6 3.8920 4.8475 7.3903 13 7 4.8438 5.4673 7.3389 14 6 1.5844 4.8242 8.2171 15 6 2.0169 5.0069 9.6491 16 1 2.9638 4.6083 9.9824 17 6 1.2067 5.6885 10.5324 18 7 0.0540 6.1743 10.1266 19 14 1.7464 5.9216 12.3055 20 1 3.0260 6.6743 12.3386 21 1 0.7056 6.6811 13.0439 22 1 1.9362 4.5942 12.9438 23 6 1.7504 2.8983 3.3750 24 6 1.5256 2.5017 2.0713 25 6 2.1388 -1.1673 -0.0005 26 8 3.3539 -1.1673 -0.0010 27 8 1.4656 -2.3332 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6085 2.0284 -0.5139 32 1 3.1500 1.1383 -0.5138 33 1 4.3202 0.6797 1.5605 34 1 4.7356 1.3876 3.8806 35 1 3.9511 2.6256 5.8036 36 1 1.2079 3.2358 6.0849 37 1 2.0476 4.6887 5.4917 38 1 0.6460 4.2704 8.1889 39 1 1.4444 5.8002 7.7526 40 1 -0.5162 6.6535 10.7481 41 1 1.0271 3.5181 3.8839 42 1 0.6261 2.8122 1.5606 43 1 1.9922 -3.1442 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737485839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:19 Heat of formation + Delta-G solvation = -61.006961 kcal Electronic energy + Delta-G solvation = -24932.521325 eV Core-core repulsion = 21169.415801 eV Total energy + Delta-G solvation = -3763.105524 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.39139 -40.37238 -38.75838 -37.47686 -36.69102 -36.15903 -35.35459 -33.58133 -31.76013 -31.21778 -28.75103 -27.67203 -26.48757 -25.10877 -23.88595 -23.09837 -22.48099 -21.31725 -19.04490 -18.76217 -18.50038 -18.35669 -18.01329 -17.32343 -16.80766 -16.49278 -16.25944 -15.82820 -15.42468 -15.03786 -14.95494 -14.65205 -14.47445 -14.23245 -14.20604 -14.13122 -13.96327 -13.84239 -13.38069 -13.21914 -13.09919 -12.87772 -12.75509 -12.59633 -12.52965 -12.43413 -12.35909 -12.07781 -11.76112 -11.57484 -11.49099 -11.24377 -10.86494 -10.55920 -9.78313 -9.74828 -8.26575 -8.21019 -6.28991 0.59604 0.62630 1.40657 1.42290 1.48888 1.61112 1.83654 1.87762 1.90644 2.38566 2.52673 3.03850 3.12296 3.17620 3.47895 3.92167 4.02233 4.06469 4.21781 4.28101 4.35674 4.40359 4.59169 4.63781 4.70370 4.75020 4.84153 4.85513 4.89781 5.01002 5.03508 5.23422 5.44539 5.45530 5.46678 5.55841 5.58900 5.76816 5.78721 5.86972 6.02023 6.16538 6.33011 6.45035 6.68630 6.79814 6.85896 7.39600 7.43846 8.89543 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024850 B = 0.002137 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.486611 B =13101.156912 C =13505.129934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.590 5.590 3 C 0.181 3.819 4 C -0.183 4.183 5 C -0.058 4.058 6 C -0.216 4.216 7 C 0.216 3.784 8 N -0.747 5.747 9 C 0.144 3.856 10 C 0.011 3.989 11 H 0.128 0.872 12 C 0.249 3.751 13 N -0.502 5.502 14 C 0.040 3.960 15 C -0.542 4.542 16 H 0.054 0.946 17 C 0.013 3.987 18 N -0.921 5.921 19 Si 0.946 3.054 20 H -0.282 1.282 21 H -0.282 1.282 22 H -0.264 1.264 23 C -0.212 4.212 24 C -0.048 4.048 25 C 0.656 3.344 26 O -0.616 6.616 27 O -0.522 6.522 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.400 0.600 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.042 0.958 39 H 0.006 0.994 40 H 0.265 0.735 41 H 0.132 0.868 42 H 0.150 0.850 43 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.099 -14.744 -22.463 27.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.330 5.330 3 C 0.060 3.940 4 C -0.186 4.186 5 C -0.077 4.077 6 C -0.238 4.238 7 C 0.112 3.888 8 N -0.376 5.376 9 C 0.019 3.981 10 C -0.011 4.011 11 H 0.145 0.855 12 C -0.067 4.067 13 N -0.179 5.179 14 C 0.001 3.999 15 C -0.580 4.580 16 H 0.072 0.928 17 C -0.186 4.186 18 N -0.560 5.560 19 Si 0.772 3.228 20 H -0.208 1.208 21 H -0.208 1.208 22 H -0.188 1.188 23 C -0.235 4.235 24 C -0.067 4.067 25 C 0.410 3.590 26 O -0.509 6.509 27 O -0.333 6.333 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.140 0.860 32 H 0.097 0.903 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.235 0.765 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.024 0.976 40 H 0.074 0.926 41 H 0.150 0.850 42 H 0.167 0.833 43 H 0.304 0.696 Dipole moment (debyes) X Y Z Total from point charges -1.895 -13.299 -22.406 26.124 hybrid contribution 0.775 -0.430 1.654 1.876 sum -1.120 -13.729 -20.752 24.908 Atomic orbital electron populations 1.21973 0.76614 1.04440 1.03208 1.46881 1.08433 1.02702 1.74954 1.20352 0.98006 0.82859 0.92742 1.20007 0.96600 1.03984 0.98012 1.20906 0.96888 0.96410 0.93490 1.20690 1.01101 1.05391 0.96656 1.18043 0.93940 0.92297 0.84515 1.44834 1.24981 1.56216 1.11564 1.21343 0.92895 0.94844 0.89039 1.19391 0.86444 0.97713 0.97518 0.85465 1.29596 0.93780 0.92760 0.90565 1.81096 1.14206 1.11251 1.11338 1.18962 0.93105 0.94864 0.92952 1.21504 1.04557 1.35663 0.96251 0.92760 1.25674 0.95076 0.95353 1.02497 1.70009 1.11565 1.37673 1.36769 0.85784 0.77614 0.78701 0.80681 1.20821 1.20764 1.18836 1.20911 0.98216 1.07462 0.96886 1.21039 0.98238 0.94312 0.93154 1.18015 0.83145 0.82182 0.75662 1.91009 1.14222 1.87598 1.58042 1.84165 1.44724 1.16385 1.88036 0.90845 0.90807 0.89108 0.85997 0.90328 0.86800 0.86374 0.76539 0.88467 0.91875 0.93929 0.97584 0.92643 0.85043 0.83251 0.69639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 10.44 127.77 1.33 2.04 16 2 N -0.59 -9.04 2.86 -981.67 -2.80 -11.84 16 3 C 0.18 2.70 5.53 85.63 0.47 3.17 16 4 C -0.18 -3.52 5.46 -19.84 -0.11 -3.63 16 5 C -0.06 -1.36 9.69 22.25 0.22 -1.14 16 6 C -0.22 -5.32 9.90 22.40 0.22 -5.09 16 7 C 0.22 5.32 6.65 38.21 0.25 5.58 16 8 N -0.75 -18.45 5.52 -339.43 -1.87 -20.33 16 9 C 0.14 3.75 4.28 86.38 0.37 4.12 16 10 C 0.01 0.36 2.26 -12.60 -0.03 0.34 16 11 H 0.13 3.72 8.14 -2.39 -0.02 3.70 16 12 C 0.25 9.53 13.46 89.43 1.20 10.73 16 13 N -0.50 -21.36 18.54 20.02 0.37 -20.99 16 14 C 0.04 1.73 4.42 29.85 0.13 1.86 16 15 C -0.54 -27.55 8.60 25.60 0.22 -27.33 16 16 H 0.05 2.73 7.59 -2.91 -0.02 2.71 16 17 C 0.01 0.71 5.46 84.66 0.46 1.18 16 18 N -0.92 -51.32 13.29 21.45 0.28 -51.03 16 19 Si 0.95 42.42 29.54 68.60 2.03 44.45 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 23 C -0.21 -4.61 9.31 22.40 0.21 -4.40 16 24 C -0.05 -0.86 9.69 22.25 0.22 -0.64 16 25 C 0.66 12.91 8.77 129.79 1.14 14.05 16 26 O -0.62 -16.43 16.23 19.80 0.32 -16.11 16 27 O -0.52 -7.03 12.25 -55.48 -0.68 -7.71 16 28 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.07 0.73 7.37 -2.39 -0.02 0.71 16 30 H 0.09 0.55 8.07 -2.39 -0.02 0.53 16 31 H 0.12 1.01 8.01 -2.39 -0.02 0.99 16 32 H 0.08 1.40 7.36 -2.39 -0.02 1.38 16 33 H 0.11 2.86 7.57 -2.91 -0.02 2.84 16 34 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16 35 H 0.40 9.58 8.23 -92.71 -0.76 8.82 16 36 H 0.10 2.25 7.94 -2.39 -0.02 2.23 16 37 H 0.06 1.70 7.96 -2.39 -0.02 1.68 16 38 H 0.04 1.84 8.14 -2.38 -0.02 1.83 16 39 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.26 14.09 8.31 -92.70 -0.77 13.32 16 41 H 0.13 2.65 6.73 -2.91 -0.02 2.63 16 42 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 43 H 0.44 2.38 9.11 -74.06 -0.67 1.71 16 Total: -1.00 -70.61 376.40 3.57 -67.04 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -0.39 Total: 15.70 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 6.31 Total: 0.82 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -4.02 Total: -104.19 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.36 Total: -23.82 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -70.61 3.57 -67.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737485839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.033 kcal (2) G-P(sol) polarization free energy of solvation -70.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds