Wall clock time and date at job start Tue Mar 31 2020 11:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99845 * 2 1 4 4 C 1.50702 * 109.47209 * 90.00582 * 3 2 1 5 5 C 1.38284 * 119.92910 * 89.99435 * 4 3 2 6 6 C 1.38102 * 120.07730 * 179.97438 * 5 4 3 7 7 C 1.38905 * 119.92398 * 0.28542 * 6 5 4 8 8 N 1.39669 * 120.07711 * 179.72013 * 7 6 5 9 9 C 1.46502 * 120.00681 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47514 * 179.97438 * 9 8 7 11 11 H 1.09005 * 109.46772 * 55.00581 * 10 9 8 12 12 C 1.47198 * 109.47290 * 295.00159 * 10 9 8 13 13 N 9.09517 * 98.02023 * 78.44971 * 2 1 3 14 14 C 1.52997 * 109.46628 * 175.00097 * 10 9 8 15 15 C 1.50710 * 109.46609 * 185.00152 * 14 10 9 16 16 H 1.07993 * 120.00028 * 0.02562 * 15 14 10 17 17 C 1.37874 * 119.99988 * 179.97438 * 15 14 10 18 18 N 1.31513 * 120.00231 * 180.02562 * 17 15 14 19 19 Si 1.86810 * 120.00029 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47308 * 89.99384 * 19 17 15 21 21 H 1.48499 * 109.46936 * 209.99707 * 19 17 15 22 22 H 1.48498 * 109.46842 * 329.99441 * 19 17 15 23 23 C 1.38914 * 119.85122 * 359.43987 * 7 6 5 24 24 C 1.38104 * 119.92314 * 0.53768 * 23 7 6 25 25 C 1.34772 * 120.00156 * 180.02562 * 2 1 3 26 26 O 1.21508 * 120.00393 * 179.97438 * 25 2 1 27 27 O 1.34643 * 119.99833 * 359.97438 * 25 2 1 28 28 H 1.08999 * 109.47547 * 89.99817 * 1 2 3 29 29 H 1.09002 * 109.46960 * 209.99913 * 1 2 3 30 30 H 1.08998 * 109.46599 * 329.99648 * 1 2 3 31 31 H 1.08998 * 109.47469 * 330.00589 * 3 2 1 32 32 H 1.09005 * 109.47420 * 210.00161 * 3 2 1 33 33 H 1.08008 * 119.95755 * 0.02755 * 5 4 3 34 34 H 1.08002 * 120.03497 * 180.02562 * 6 5 4 35 35 H 0.97008 * 120.00083 * 0.02562 * 8 7 6 36 36 H 1.08995 * 109.47221 * 300.00552 * 9 8 7 37 37 H 1.09006 * 109.46597 * 60.00077 * 9 8 7 38 38 H 1.08994 * 109.47337 * 304.99907 * 14 10 9 39 39 H 1.08996 * 109.47293 * 65.00397 * 14 10 9 40 40 H 0.97005 * 119.99982 * 180.02562 * 18 17 15 41 41 H 1.07997 * 120.04003 * 180.25530 * 23 7 6 42 42 H 1.08007 * 119.96360 * 179.74357 * 24 23 7 43 43 H 0.96699 * 117.00042 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 1.4208 5 6 3.6017 1.3036 2.0712 6 6 3.8353 1.7009 3.3731 7 6 2.9078 2.4984 4.0312 8 7 3.1381 2.8972 5.3498 9 6 2.1591 3.7389 6.0423 10 6 2.6492 4.0284 7.4624 11 1 3.6464 4.4666 7.4203 12 6 2.6965 2.7737 8.2306 13 7 2.7340 1.8033 8.8238 14 6 1.6904 5.0073 8.1431 15 6 2.2371 5.3878 9.4950 16 1 3.1748 4.9733 9.8344 17 6 1.5407 6.2660 10.2979 18 7 2.0179 6.5984 11.4774 19 14 -0.0810 6.9836 9.7105 20 1 -1.1962 6.0996 10.1348 21 1 -0.2674 8.3336 10.3003 22 1 -0.0683 7.0881 8.2292 23 6 1.7534 2.9033 3.3730 24 6 1.5263 2.5028 2.0710 25 6 2.1389 -1.1671 -0.0005 26 8 3.3540 -1.1672 -0.0010 27 8 1.4657 -2.3332 -0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 1.6084 2.0284 -0.5137 32 1 3.1500 1.1385 -0.5139 33 1 4.3206 0.6803 1.5601 34 1 4.7361 1.3883 3.8802 35 1 3.9467 2.6175 5.8069 36 1 2.0388 4.6770 5.5006 37 1 1.2015 3.2201 6.0875 38 1 1.5869 5.9013 7.5283 39 1 0.7155 4.5354 8.2651 40 1 1.5277 7.2160 12.0425 41 1 1.0323 3.5269 3.8804 42 1 0.6270 2.8139 1.5601 43 1 1.9924 -3.1442 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737485840.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:24 Heat of formation + Delta-G solvation = -35.673534 kcal Electronic energy + Delta-G solvation = -25013.293051 eV Core-core repulsion = 21251.286067 eV Total energy + Delta-G solvation = -3762.006984 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.69790 -39.53282 -37.60213 -36.66744 -35.89252 -35.02028 -33.69999 -32.12331 -30.93101 -30.38403 -27.81274 -27.00593 -25.55856 -23.99079 -22.43378 -21.76586 -21.54065 -20.55366 -18.39699 -17.69856 -17.61732 -17.01760 -16.92799 -16.56898 -15.81880 -15.61883 -15.10530 -14.59933 -14.26809 -13.99877 -13.98799 -13.65514 -13.55153 -13.39792 -13.28111 -13.09677 -12.78902 -12.59310 -12.43853 -12.15500 -12.07844 -11.88590 -11.64018 -11.58929 -11.44628 -11.04570 -10.93897 -10.77531 -10.47100 -10.14508 -10.01122 -9.91983 -9.44712 -9.15399 -8.92089 -8.69968 -7.38800 -6.18796 -4.20835 1.37750 1.46574 2.22994 2.56163 3.21083 3.27912 3.29098 3.34147 3.40342 3.52519 3.82818 4.02635 4.30648 4.50626 4.70236 4.75337 4.81711 4.97447 5.02950 5.08669 5.13455 5.15518 5.33365 5.39168 5.42711 5.46293 5.60847 5.74852 5.77675 5.99708 6.02805 6.05980 6.10552 6.27476 6.32928 6.36525 6.63575 6.80289 6.84902 6.96304 6.97110 7.32685 7.52852 7.70453 8.07534 8.20998 8.31972 8.83255 9.40100 10.94048 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023236 B = 0.002278 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.722516 B =12285.931631 C =12714.196442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.591 5.591 3 C 0.181 3.819 4 C -0.186 4.186 5 C -0.044 4.044 6 C -0.203 4.203 7 C 0.232 3.768 8 N -0.745 5.745 9 C 0.128 3.872 10 C 0.008 3.992 11 H 0.114 0.886 12 C 0.233 3.767 13 N -0.458 5.458 14 C -0.002 4.002 15 C -0.532 4.532 16 H 0.074 0.926 17 C 0.072 3.928 18 N -0.895 5.895 19 Si 0.878 3.122 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.262 1.262 23 C -0.203 4.203 24 C -0.054 4.054 25 C 0.663 3.337 26 O -0.577 6.577 27 O -0.528 6.528 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.400 0.600 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.042 0.958 39 H 0.023 0.977 40 H 0.266 0.734 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.025 -9.789 -27.051 28.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.332 5.332 3 C 0.061 3.939 4 C -0.190 4.190 5 C -0.063 4.063 6 C -0.226 4.226 7 C 0.127 3.873 8 N -0.373 5.373 9 C 0.003 3.997 10 C -0.014 4.014 11 H 0.132 0.868 12 C -0.084 4.084 13 N -0.134 5.134 14 C -0.041 4.041 15 C -0.570 4.570 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.532 5.532 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.186 1.186 23 C -0.226 4.226 24 C -0.073 4.073 25 C 0.416 3.584 26 O -0.467 6.467 27 O -0.338 6.338 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.235 0.765 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.041 0.959 40 H 0.076 0.924 41 H 0.142 0.858 42 H 0.135 0.865 43 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -3.053 -10.709 -25.899 28.191 hybrid contribution -0.313 0.225 0.141 0.410 sum -3.366 -10.485 -25.758 28.013 Atomic orbital electron populations 1.21780 0.78508 1.03783 1.01889 1.46752 1.07286 1.03250 1.75911 1.20283 0.97652 0.82107 0.93887 1.19768 0.97312 1.04700 0.97173 1.20853 0.96120 0.95884 0.93468 1.20610 1.00825 1.04907 0.96226 1.17909 0.93285 0.91644 0.84445 1.44929 1.24897 1.56366 1.11076 1.21565 0.92123 0.94997 0.91032 1.19215 1.04492 0.87637 0.90035 0.86846 1.29041 0.92589 0.93654 0.93109 1.81151 1.09356 1.13334 1.09549 1.19619 0.93977 0.93392 0.97115 1.20977 1.09120 1.27648 0.99233 0.90784 1.24992 0.97662 0.95825 0.94590 1.69900 1.39179 1.34364 1.09774 0.86808 0.84211 0.78779 0.79699 1.20205 1.21161 1.18628 1.20645 0.98553 1.07351 0.96053 1.20717 0.97408 0.95392 0.93795 1.17760 0.83438 0.81237 0.75921 1.91030 1.12473 1.86954 1.56203 1.84183 1.44822 1.16303 1.88495 0.92491 0.90519 0.90681 0.89269 0.89032 0.85824 0.86364 0.76489 0.90076 0.91601 0.94035 0.95857 0.92440 0.85810 0.86494 0.71435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.49 10.44 59.85 0.63 1.11 16 2 N -0.59 -5.05 2.86 -188.80 -0.54 -5.59 16 3 C 0.18 1.47 5.53 -5.19 -0.03 1.44 16 4 C -0.19 -1.87 5.46 -104.59 -0.57 -2.45 16 5 C -0.04 -0.51 9.69 -39.61 -0.38 -0.89 16 6 C -0.20 -2.43 9.90 -39.38 -0.39 -2.82 16 7 C 0.23 2.85 6.65 -83.79 -0.56 2.29 16 8 N -0.74 -9.15 5.52 -58.63 -0.32 -9.47 16 9 C 0.13 1.63 4.28 -4.04 -0.02 1.62 16 10 C 0.01 0.13 2.26 -93.41 -0.21 -0.08 16 11 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 12 C 0.23 4.47 13.46 -20.70 -0.28 4.19 16 13 N -0.46 -9.79 18.55 42.23 0.78 -9.01 16 14 C 0.00 -0.04 3.49 -27.88 -0.10 -0.14 16 15 C -0.53 -13.81 9.15 -34.44 -0.32 -14.12 16 16 H 0.07 2.12 7.84 -52.49 -0.41 1.71 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.89 -26.43 13.96 55.43 0.77 -25.65 16 19 Si 0.88 19.97 27.47 -169.99 -4.67 15.30 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.26 -5.43 6.54 56.52 0.37 -5.06 16 23 C -0.20 -2.28 9.31 -39.38 -0.37 -2.64 16 24 C -0.05 -0.52 9.69 -39.61 -0.38 -0.90 16 25 C 0.66 6.82 8.77 54.05 0.47 7.30 16 26 O -0.58 -7.63 16.23 -19.28 -0.31 -7.94 16 27 O -0.53 -3.96 12.25 -40.33 -0.49 -4.45 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 0.48 7.38 -51.93 -0.38 0.09 16 30 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 31 H 0.09 0.49 8.01 -51.93 -0.42 0.08 16 32 H 0.09 0.81 7.36 -51.93 -0.38 0.43 16 33 H 0.12 1.46 7.57 -52.48 -0.40 1.06 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.40 4.77 8.23 -40.82 -0.34 4.43 16 36 H 0.08 0.92 7.94 -51.93 -0.41 0.50 16 37 H 0.07 0.85 7.96 -51.93 -0.41 0.43 16 38 H 0.04 0.78 7.20 -51.93 -0.37 0.41 16 39 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.12 1.28 6.73 -52.49 -0.35 0.92 16 42 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 43 H 0.43 1.43 9.11 45.56 0.42 1.84 16 LS Contribution 372.82 15.07 5.62 5.62 Total: -1.00 -34.28 372.82 -6.90 -41.18 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.13 Total: 4.24 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -2.60 Total: -4.22 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.69 Total: -49.72 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.81 Total: -12.39 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.67 Total: 15.30 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.28 -6.90 -41.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737485840.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.502 kcal (2) G-P(sol) polarization free energy of solvation -34.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds