Wall clock time and date at job start Tue Mar 31 2020 11:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99845 * 2 1 4 4 C 1.50702 * 109.47209 * 90.00582 * 3 2 1 5 5 C 1.38284 * 119.92910 * 89.99435 * 4 3 2 6 6 C 1.38102 * 120.07730 * 179.97438 * 5 4 3 7 7 C 1.38905 * 119.92398 * 0.28542 * 6 5 4 8 8 N 1.39669 * 120.07711 * 179.72013 * 7 6 5 9 9 C 1.46502 * 120.00681 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47514 * 179.97438 * 9 8 7 11 11 H 1.09005 * 109.46772 * 55.00581 * 10 9 8 12 12 C 1.47198 * 109.47290 * 295.00159 * 10 9 8 13 13 N 9.09517 * 98.02023 * 78.44971 * 2 1 3 14 14 C 1.52997 * 109.46628 * 175.00097 * 10 9 8 15 15 C 1.50710 * 109.46609 * 185.00152 * 14 10 9 16 16 H 1.07993 * 120.00028 * 0.02562 * 15 14 10 17 17 C 1.37874 * 119.99988 * 179.97438 * 15 14 10 18 18 N 1.31513 * 120.00231 * 180.02562 * 17 15 14 19 19 Si 1.86810 * 120.00029 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47308 * 89.99384 * 19 17 15 21 21 H 1.48499 * 109.46936 * 209.99707 * 19 17 15 22 22 H 1.48498 * 109.46842 * 329.99441 * 19 17 15 23 23 C 1.38914 * 119.85122 * 359.43987 * 7 6 5 24 24 C 1.38104 * 119.92314 * 0.53768 * 23 7 6 25 25 C 1.34772 * 120.00156 * 180.02562 * 2 1 3 26 26 O 1.21508 * 120.00393 * 179.97438 * 25 2 1 27 27 O 1.34643 * 119.99833 * 359.97438 * 25 2 1 28 28 H 1.08999 * 109.47547 * 89.99817 * 1 2 3 29 29 H 1.09002 * 109.46960 * 209.99913 * 1 2 3 30 30 H 1.08998 * 109.46599 * 329.99648 * 1 2 3 31 31 H 1.08998 * 109.47469 * 330.00589 * 3 2 1 32 32 H 1.09005 * 109.47420 * 210.00161 * 3 2 1 33 33 H 1.08008 * 119.95755 * 0.02755 * 5 4 3 34 34 H 1.08002 * 120.03497 * 180.02562 * 6 5 4 35 35 H 0.97008 * 120.00083 * 0.02562 * 8 7 6 36 36 H 1.08995 * 109.47221 * 300.00552 * 9 8 7 37 37 H 1.09006 * 109.46597 * 60.00077 * 9 8 7 38 38 H 1.08994 * 109.47337 * 304.99907 * 14 10 9 39 39 H 1.08996 * 109.47293 * 65.00397 * 14 10 9 40 40 H 0.97005 * 119.99982 * 180.02562 * 18 17 15 41 41 H 1.07997 * 120.04003 * 180.25530 * 23 7 6 42 42 H 1.08007 * 119.96360 * 179.74357 * 24 23 7 43 43 H 0.96699 * 117.00042 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 1.4208 5 6 3.6017 1.3036 2.0712 6 6 3.8353 1.7009 3.3731 7 6 2.9078 2.4984 4.0312 8 7 3.1381 2.8972 5.3498 9 6 2.1591 3.7389 6.0423 10 6 2.6492 4.0284 7.4624 11 1 3.6464 4.4666 7.4203 12 6 2.6965 2.7737 8.2306 13 7 2.7340 1.8033 8.8238 14 6 1.6904 5.0073 8.1431 15 6 2.2371 5.3878 9.4950 16 1 3.1748 4.9733 9.8344 17 6 1.5407 6.2660 10.2979 18 7 2.0179 6.5984 11.4774 19 14 -0.0810 6.9836 9.7105 20 1 -1.1962 6.0996 10.1348 21 1 -0.2674 8.3336 10.3003 22 1 -0.0683 7.0881 8.2292 23 6 1.7534 2.9033 3.3730 24 6 1.5263 2.5028 2.0710 25 6 2.1389 -1.1671 -0.0005 26 8 3.3540 -1.1672 -0.0010 27 8 1.4657 -2.3332 -0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 1.6084 2.0284 -0.5137 32 1 3.1500 1.1385 -0.5139 33 1 4.3206 0.6803 1.5601 34 1 4.7361 1.3883 3.8802 35 1 3.9467 2.6175 5.8069 36 1 2.0388 4.6770 5.5006 37 1 1.2015 3.2201 6.0875 38 1 1.5869 5.9013 7.5283 39 1 0.7155 4.5354 8.2651 40 1 1.5277 7.2160 12.0425 41 1 1.0323 3.5269 3.8804 42 1 0.6270 2.8139 1.5601 43 1 1.9924 -3.1442 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737485840.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:23 Heat of formation + Delta-G solvation = -59.338621 kcal Electronic energy + Delta-G solvation = -25014.319246 eV Core-core repulsion = 21251.286067 eV Total energy + Delta-G solvation = -3763.033179 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.40657 -40.37213 -38.78720 -37.49093 -36.70985 -36.16784 -35.30198 -33.73166 -31.76786 -31.33792 -29.06967 -27.71396 -26.49691 -25.06141 -23.56367 -23.07587 -22.47225 -21.31397 -19.07552 -18.96175 -18.69188 -18.40703 -18.01149 -17.33428 -16.89276 -16.35221 -16.15612 -15.78908 -15.41965 -15.23422 -14.91228 -14.67260 -14.54023 -14.37339 -14.26625 -14.11441 -14.01504 -13.89388 -13.41863 -13.25274 -13.19355 -12.91930 -12.74229 -12.62804 -12.55456 -12.39147 -12.01860 -11.77412 -11.71023 -11.70120 -11.56590 -11.36287 -10.85489 -10.73894 -9.79433 -9.74049 -8.25545 -8.24920 -6.31483 0.60139 0.63520 1.45391 1.46316 1.57296 1.60017 1.81629 1.85475 1.89042 2.41651 2.50829 3.04324 3.08582 3.15841 3.46437 3.86711 4.02126 4.06926 4.22412 4.25675 4.35516 4.38890 4.54042 4.60860 4.69779 4.75094 4.81450 4.84343 4.87407 4.99961 5.01784 5.21378 5.24071 5.40524 5.44701 5.47000 5.56441 5.62452 5.77568 5.86779 6.03577 6.23145 6.31044 6.46863 6.67568 6.76909 6.80540 7.33332 7.41610 8.91813 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023236 B = 0.002278 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.722516 B =12285.931631 C =12714.196442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.590 5.590 3 C 0.180 3.820 4 C -0.183 4.183 5 C -0.059 4.059 6 C -0.218 4.218 7 C 0.217 3.783 8 N -0.749 5.749 9 C 0.140 3.860 10 C 0.016 3.984 11 H 0.125 0.875 12 C 0.246 3.754 13 N -0.505 5.505 14 C -0.001 4.001 15 C -0.533 4.533 16 H 0.028 0.972 17 C 0.001 3.999 18 N -0.955 5.955 19 Si 0.948 3.052 20 H -0.277 1.277 21 H -0.292 1.292 22 H -0.216 1.216 23 C -0.210 4.210 24 C -0.048 4.048 25 C 0.655 3.345 26 O -0.616 6.616 27 O -0.523 6.523 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.399 0.601 36 H 0.108 0.892 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.030 0.970 40 H 0.264 0.736 41 H 0.138 0.862 42 H 0.152 0.848 43 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.868 -8.802 -30.299 32.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.330 5.330 3 C 0.060 3.940 4 C -0.187 4.187 5 C -0.078 4.078 6 C -0.241 4.241 7 C 0.113 3.887 8 N -0.378 5.378 9 C 0.015 3.985 10 C -0.006 4.006 11 H 0.142 0.858 12 C -0.070 4.070 13 N -0.182 5.182 14 C -0.040 4.040 15 C -0.571 4.571 16 H 0.046 0.954 17 C -0.196 4.196 18 N -0.596 5.596 19 Si 0.771 3.229 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.138 1.138 23 C -0.232 4.232 24 C -0.067 4.067 25 C 0.409 3.591 26 O -0.509 6.509 27 O -0.334 6.334 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.142 0.858 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.233 0.767 36 H 0.126 0.874 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.156 0.844 42 H 0.169 0.831 43 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges -5.911 -9.756 -29.196 31.345 hybrid contribution 0.651 -0.180 1.143 1.327 sum -5.260 -9.936 -28.053 30.222 Atomic orbital electron populations 1.21974 0.76631 1.04393 1.03239 1.46899 1.08440 1.02728 1.74929 1.20381 0.98013 0.82773 0.92843 1.20009 0.96601 1.04065 0.97989 1.20897 0.96987 0.96399 0.93555 1.20685 1.01170 1.05570 0.96625 1.18028 0.94002 0.92290 0.84389 1.44851 1.24872 1.56810 1.11273 1.21458 0.91946 0.96452 0.88609 1.19283 1.04487 0.85372 0.91470 0.85780 1.29728 0.91238 0.93793 0.92241 1.81152 1.10890 1.15101 1.11051 1.19576 0.94573 0.95419 0.94444 1.21382 1.07365 1.26429 1.01912 0.95368 1.26076 1.02215 0.96684 0.94588 1.70092 1.41502 1.36091 1.11866 0.85700 0.78331 0.77120 0.81775 1.20309 1.21839 1.13835 1.20929 0.98203 1.07360 0.96720 1.21059 0.98134 0.94231 0.93295 1.18044 0.83172 0.82206 0.75698 1.91007 1.14228 1.87593 1.58032 1.84165 1.44767 1.16432 1.88050 0.90770 0.91052 0.88951 0.85771 0.90374 0.87063 0.86708 0.76705 0.87382 0.91140 0.90959 0.95116 0.92680 0.84408 0.83070 0.69672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 10.44 127.77 1.33 2.00 16 2 N -0.59 -8.76 2.86 -981.65 -2.80 -11.57 16 3 C 0.18 2.49 5.53 85.63 0.47 2.96 16 4 C -0.18 -3.29 5.46 -19.84 -0.11 -3.39 16 5 C -0.06 -1.34 9.69 22.25 0.22 -1.13 16 6 C -0.22 -5.16 9.90 22.40 0.22 -4.94 16 7 C 0.22 4.92 6.65 38.21 0.25 5.17 16 8 N -0.75 -16.98 5.52 -339.41 -1.87 -18.85 16 9 C 0.14 3.10 4.28 86.38 0.37 3.47 16 10 C 0.02 0.48 2.26 -12.60 -0.03 0.45 16 11 H 0.12 3.54 8.14 -2.38 -0.02 3.52 16 12 C 0.25 9.34 13.46 89.42 1.20 10.54 16 13 N -0.50 -21.87 18.55 20.03 0.37 -21.50 16 14 C 0.00 -0.04 3.49 29.85 0.10 0.06 16 15 C -0.53 -27.66 9.15 25.60 0.23 -27.43 16 16 H 0.03 1.67 7.84 -2.91 -0.02 1.65 16 17 C 0.00 0.06 5.47 84.65 0.46 0.52 16 18 N -0.96 -58.18 13.96 21.45 0.30 -57.88 16 19 Si 0.95 39.79 27.47 68.60 1.88 41.68 16 20 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.22 -7.46 6.54 99.48 0.65 -6.81 16 23 C -0.21 -3.96 9.31 22.40 0.21 -3.75 16 24 C -0.05 -0.75 9.69 22.25 0.22 -0.53 16 25 C 0.66 12.89 8.77 129.79 1.14 14.03 16 26 O -0.62 -16.45 16.23 19.81 0.32 -16.13 16 27 O -0.52 -7.19 12.25 -55.53 -0.68 -7.87 16 28 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.07 0.70 7.38 -2.39 -0.02 0.68 16 30 H 0.09 0.47 8.07 -2.39 -0.02 0.45 16 31 H 0.12 0.84 8.01 -2.39 -0.02 0.82 16 32 H 0.08 1.31 7.36 -2.38 -0.02 1.30 16 33 H 0.11 2.75 7.57 -2.91 -0.02 2.73 16 34 H 0.11 2.64 8.06 -2.91 -0.02 2.62 16 35 H 0.40 9.17 8.23 -92.70 -0.76 8.41 16 36 H 0.11 1.88 7.94 -2.39 -0.02 1.86 16 37 H 0.07 1.53 7.96 -2.38 -0.02 1.51 16 38 H 0.07 2.33 7.20 -2.39 -0.02 2.31 16 39 H 0.03 1.12 7.57 -2.39 -0.02 1.11 16 40 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 41 H 0.14 2.18 6.73 -2.91 -0.02 2.17 16 42 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 43 H 0.44 2.58 9.11 -74.06 -0.67 1.90 16 Total: -1.00 -77.95 372.82 3.38 -74.58 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -0.44 Total: 19.51 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 6.30 Total: -1.97 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -4.01 Total: -109.80 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.36 Total: -24.00 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 1.88 Total: 41.68 kcal Total: -77.95 3.38 -74.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737485840.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.237 kcal (2) G-P(sol) polarization free energy of solvation -77.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds