Wall clock time and date at job start Tue Mar 31 2020 11:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34847 * 125.20523 * 2 1 4 4 O 1.21280 * 125.74855 * 359.56342 * 3 2 1 5 5 C 1.51314 * 108.50065 * 179.53913 * 3 2 1 6 6 N 1.48232 * 104.76646 * 343.24015 * 5 3 2 7 7 C 1.46895 * 110.99951 * 145.28806 * 6 5 3 8 8 C 1.50700 * 109.47039 * 69.87842 * 7 6 5 9 9 O 1.21281 * 120.00120 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00294 * 180.27687 * 8 7 6 11 11 C 1.46493 * 120.00159 * 179.72124 * 10 8 7 12 12 C 1.50702 * 109.47205 * 179.97438 * 11 10 8 13 13 H 1.08004 * 119.99695 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00209 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00318 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99949 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47030 * 90.00400 * 16 14 12 18 18 H 1.48505 * 109.47354 * 210.00063 * 16 14 12 19 19 H 1.48499 * 109.47361 * 330.00418 * 16 14 12 20 20 C 1.46803 * 125.20649 * 179.97438 * 2 1 3 21 21 H 1.08993 * 110.12186 * 78.45756 * 20 2 1 22 22 C 1.50703 * 110.11412 * 316.80137 * 20 2 1 23 23 C 1.38235 * 119.99855 * 117.88611 * 22 20 2 24 24 C 1.38241 * 119.99768 * 179.78803 * 23 22 20 25 25 C 1.38239 * 119.99954 * 0.43717 * 24 23 22 26 26 C 1.38228 * 119.99894 * 359.81216 * 25 24 23 27 27 C 1.38237 * 120.00380 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47046 * 356.27108 * 1 2 3 29 29 H 1.08994 * 109.46913 * 116.27005 * 1 2 3 30 30 H 1.08996 * 109.46950 * 236.27000 * 1 2 3 31 31 H 1.08998 * 110.37423 * 224.41855 * 5 3 2 32 32 H 1.08996 * 110.47339 * 102.11084 * 5 3 2 33 33 H 1.08993 * 109.47406 * 309.87630 * 7 6 5 34 34 H 1.09004 * 109.47301 * 189.87464 * 7 6 5 35 35 H 0.97002 * 119.99409 * 359.72030 * 10 8 7 36 36 H 1.09003 * 109.47455 * 299.99528 * 11 10 8 37 37 H 1.09000 * 109.47405 * 60.00125 * 11 10 8 38 38 H 0.96992 * 119.99949 * 179.97438 * 15 14 12 39 39 H 1.07999 * 120.00098 * 359.97438 * 23 22 20 40 40 H 1.07998 * 120.00048 * 180.27347 * 24 23 22 41 41 H 1.08003 * 119.99488 * 179.83495 * 25 24 23 42 42 H 1.07995 * 120.00140 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.00535 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2425 1.1018 0.0000 4 8 1.8467 2.2482 -0.0075 5 6 3.6917 0.6669 0.0115 6 7 3.6563 -0.7543 0.4312 7 6 4.7077 -1.5284 -0.2421 8 6 6.0552 -1.1160 0.2919 9 8 6.1322 -0.2611 1.1487 10 7 7.1752 -1.6929 -0.1870 11 6 8.4855 -1.2877 0.3278 12 6 9.5644 -2.0783 -0.3664 13 1 9.3004 -2.8092 -1.1164 14 6 10.8885 -1.8678 -0.0448 15 7 11.2100 -0.9774 0.8681 16 14 12.2257 -2.8484 -0.9049 17 1 12.6645 -2.1234 -2.1245 18 1 13.3815 -3.0194 0.0119 19 1 11.6945 -4.1817 -1.2859 20 6 2.3114 -1.1995 0.0005 21 1 2.3603 -1.6244 -1.0020 22 6 1.7673 -2.2173 0.9697 23 6 1.3437 -3.4507 0.5113 24 6 0.8487 -4.3859 1.4009 25 6 0.7688 -4.0843 2.7476 26 6 1.1876 -2.8490 3.2052 27 6 1.6867 -1.9154 2.3163 28 1 -0.3633 1.0255 0.0668 29 1 -0.3633 -0.4548 -0.9215 30 1 -0.3633 -0.5706 0.8546 31 1 4.2602 1.2602 0.7277 32 1 4.1250 0.7579 -0.9845 33 1 4.6683 -1.3384 -1.3146 34 1 4.5526 -2.5910 -0.0554 35 1 7.1136 -2.3764 -0.8725 36 1 8.6364 -0.2244 0.1409 37 1 8.5292 -1.4778 1.4002 38 1 12.1415 -0.8296 1.0945 39 1 1.4024 -3.6848 -0.5414 40 1 0.5219 -5.3512 1.0434 41 1 0.3796 -4.8140 3.4422 42 1 1.1248 -2.6132 4.2572 43 1 2.0143 -0.9504 2.6738 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801948356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:53 Heat of formation + Delta-G solvation = -13.489363 kcal Electronic energy + Delta-G solvation = -26211.343035 eV Core-core repulsion = 22450.298029 eV Total energy + Delta-G solvation = -3761.045006 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.22136 -39.10553 -38.82142 -37.05044 -34.59891 -34.07626 -32.37304 -31.80399 -31.06943 -29.80229 -27.57001 -27.17227 -25.74292 -23.57911 -22.79371 -22.24017 -21.25693 -20.15701 -19.70655 -17.54837 -17.26805 -16.69501 -16.58353 -15.79513 -15.71290 -15.29520 -15.15386 -15.08496 -14.78575 -14.37461 -14.22014 -13.82564 -13.72625 -13.57054 -13.37022 -13.01925 -12.83887 -12.78975 -12.51761 -12.43085 -12.11533 -11.96987 -11.44096 -11.38736 -11.21035 -11.00318 -10.89769 -10.34400 -10.06478 -9.47128 -9.42113 -9.12259 -9.08960 -9.02348 -8.76576 -8.63733 -7.92636 -6.18992 -4.26281 1.04097 1.23281 2.35957 2.59963 3.22333 3.25528 3.28438 3.30292 3.32724 3.69642 4.04949 4.20378 4.31463 4.40878 4.56082 4.79589 4.83267 4.88252 4.96554 5.04149 5.14348 5.17154 5.19947 5.26039 5.29217 5.41650 5.45649 5.47103 5.64021 5.73704 5.85757 6.00554 6.16519 6.24024 6.32656 6.38757 6.64607 6.78095 6.83141 7.27357 7.38105 7.48807 7.62932 7.92234 7.94154 8.56715 8.74674 9.04304 9.40421 10.91128 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015329 B = 0.003038 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.192267 B = 9215.114051 C =10350.466795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.622 5.622 3 C 0.520 3.480 4 O -0.521 6.521 5 C 0.005 3.995 6 N -0.476 5.476 7 C 0.024 3.976 8 C 0.501 3.499 9 O -0.535 6.535 10 N -0.712 5.712 11 C 0.252 3.748 12 C -0.544 4.544 13 H 0.063 0.937 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.904 3.096 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.325 3.675 21 H 0.072 0.928 22 C -0.094 4.094 23 C -0.105 4.105 24 C -0.125 4.125 25 C -0.112 4.112 26 C -0.125 4.125 27 C -0.069 4.069 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.134 0.866 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.390 0.610 36 H 0.027 0.973 37 H 0.028 0.972 38 H 0.266 0.734 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.632 -6.635 -2.542 24.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.358 5.358 3 C 0.308 3.692 4 O -0.396 6.396 5 C -0.125 4.125 6 N -0.201 5.201 7 C -0.107 4.107 8 C 0.284 3.716 9 O -0.413 6.413 10 N -0.362 5.362 11 C 0.131 3.869 12 C -0.583 4.583 13 H 0.081 0.919 14 C -0.140 4.140 15 N -0.522 5.522 16 Si 0.731 3.269 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 C 0.132 3.868 21 H 0.089 0.911 22 C -0.095 4.095 23 C -0.124 4.124 24 C -0.144 4.144 25 C -0.130 4.130 26 C -0.143 4.143 27 C -0.088 4.088 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.151 0.849 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.222 0.778 36 H 0.045 0.955 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -23.585 -5.344 -1.251 24.215 hybrid contribution 0.778 -0.991 -1.585 2.025 sum -22.807 -6.335 -2.836 23.840 Atomic orbital electron populations 1.21500 0.77109 1.03631 1.01744 1.48489 1.06668 1.06585 1.74081 1.21149 0.88954 0.84604 0.74485 1.90737 1.79536 1.19273 1.50006 1.23255 0.94574 0.91037 1.03613 1.65325 0.99941 1.01897 1.52937 1.22354 0.91220 1.00071 0.97089 1.20020 0.85185 0.83068 0.83329 1.90680 1.86977 1.32083 1.31526 1.46425 1.07562 1.40791 1.41379 1.19105 0.76505 0.96124 0.95159 1.21213 0.91100 1.22761 1.23198 0.91910 1.24950 0.98722 0.95293 0.95033 1.69970 1.18561 1.32941 1.30705 0.86421 0.81076 0.80161 0.79273 1.20471 1.20993 1.19744 1.21085 0.85207 0.84587 0.95929 0.91086 1.19649 1.00923 0.94430 0.94515 1.20994 0.98661 0.92986 0.99732 1.21067 1.00554 0.99264 0.93466 1.21208 0.99282 0.96766 0.95763 1.21208 0.99371 0.93911 0.99833 1.20997 0.95765 0.99696 0.92309 0.89810 0.92105 0.91682 0.84852 0.89470 0.91261 0.87351 0.77770 0.95505 0.95447 0.92406 0.86068 0.85990 0.86139 0.85957 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.87 10.72 59.85 0.64 1.52 16 2 N -0.62 -6.91 3.12 -177.53 -0.55 -7.46 16 3 C 0.52 7.30 8.20 -10.65 -0.09 7.21 16 4 O -0.52 -8.95 17.50 5.56 0.10 -8.85 16 5 C 0.01 0.07 5.73 -3.94 -0.02 0.05 16 6 N -0.48 -6.20 4.65 -232.02 -1.08 -7.27 16 7 C 0.02 0.31 5.10 -4.98 -0.03 0.28 16 8 C 0.50 9.22 7.63 -10.98 -0.08 9.13 16 9 O -0.54 -12.13 15.12 5.56 0.08 -12.05 16 10 N -0.71 -14.03 5.55 -61.47 -0.34 -14.37 16 11 C 0.25 6.46 5.43 -5.20 -0.03 6.43 16 12 C -0.54 -14.39 9.28 -34.44 -0.32 -14.71 16 13 H 0.06 1.54 7.60 -52.48 -0.40 1.14 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.88 -25.75 13.29 55.43 0.74 -25.01 16 16 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 C 0.32 3.36 3.04 -126.73 -0.39 2.97 16 21 H 0.07 0.60 7.57 -51.93 -0.39 0.21 16 22 C -0.09 -0.93 4.30 -104.62 -0.45 -1.38 16 23 C -0.10 -0.87 9.68 -39.58 -0.38 -1.25 16 24 C -0.13 -0.99 10.05 -39.58 -0.40 -1.39 16 25 C -0.11 -0.93 10.05 -39.58 -0.40 -1.33 16 26 C -0.13 -1.19 10.05 -39.59 -0.40 -1.59 16 27 C -0.07 -0.75 9.26 -39.58 -0.37 -1.12 16 28 H 0.08 0.77 7.66 -51.93 -0.40 0.37 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.52 7.56 -51.93 -0.39 0.12 16 31 H 0.13 2.16 7.47 -51.93 -0.39 1.77 16 32 H 0.09 1.09 7.61 -51.93 -0.40 0.70 16 33 H 0.07 0.69 7.83 -51.93 -0.41 0.29 16 34 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.39 6.43 8.32 -40.82 -0.34 6.09 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.12 0.76 7.97 -52.49 -0.42 0.34 16 40 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 43 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -33.92 366.72 -9.40 -43.32 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -6.05 Total: 4.23 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -2.80 Total: 6.47 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -1.24 Total: -54.12 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: 0.18 Total: -20.90 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.92 -9.40 -43.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801948356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.827 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds