Wall clock time and date at job start Tue Mar 31 2020 11:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34847 * 125.20523 * 2 1 4 4 O 1.21280 * 125.74855 * 359.56342 * 3 2 1 5 5 C 1.51314 * 108.50065 * 179.53913 * 3 2 1 6 6 N 1.48232 * 104.76646 * 343.24015 * 5 3 2 7 7 C 1.46895 * 110.99951 * 145.28806 * 6 5 3 8 8 C 1.50700 * 109.47039 * 69.87842 * 7 6 5 9 9 O 1.21281 * 120.00120 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00294 * 180.27687 * 8 7 6 11 11 C 1.46493 * 120.00159 * 179.72124 * 10 8 7 12 12 C 1.50702 * 109.47205 * 179.97438 * 11 10 8 13 13 H 1.08004 * 119.99695 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00209 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00318 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99949 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47030 * 90.00400 * 16 14 12 18 18 H 1.48505 * 109.47354 * 210.00063 * 16 14 12 19 19 H 1.48499 * 109.47361 * 330.00418 * 16 14 12 20 20 C 1.46803 * 125.20649 * 179.97438 * 2 1 3 21 21 H 1.08993 * 110.12186 * 78.45756 * 20 2 1 22 22 C 1.50703 * 110.11412 * 316.80137 * 20 2 1 23 23 C 1.38235 * 119.99855 * 117.88611 * 22 20 2 24 24 C 1.38241 * 119.99768 * 179.78803 * 23 22 20 25 25 C 1.38239 * 119.99954 * 0.43717 * 24 23 22 26 26 C 1.38228 * 119.99894 * 359.81216 * 25 24 23 27 27 C 1.38237 * 120.00380 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47046 * 356.27108 * 1 2 3 29 29 H 1.08994 * 109.46913 * 116.27005 * 1 2 3 30 30 H 1.08996 * 109.46950 * 236.27000 * 1 2 3 31 31 H 1.08998 * 110.37423 * 224.41855 * 5 3 2 32 32 H 1.08996 * 110.47339 * 102.11084 * 5 3 2 33 33 H 1.08993 * 109.47406 * 309.87630 * 7 6 5 34 34 H 1.09004 * 109.47301 * 189.87464 * 7 6 5 35 35 H 0.97002 * 119.99409 * 359.72030 * 10 8 7 36 36 H 1.09003 * 109.47455 * 299.99528 * 11 10 8 37 37 H 1.09000 * 109.47405 * 60.00125 * 11 10 8 38 38 H 0.96992 * 119.99949 * 179.97438 * 15 14 12 39 39 H 1.07999 * 120.00098 * 359.97438 * 23 22 20 40 40 H 1.07998 * 120.00048 * 180.27347 * 24 23 22 41 41 H 1.08003 * 119.99488 * 179.83495 * 25 24 23 42 42 H 1.07995 * 120.00140 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.00535 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2425 1.1018 0.0000 4 8 1.8467 2.2482 -0.0075 5 6 3.6917 0.6669 0.0115 6 7 3.6563 -0.7543 0.4312 7 6 4.7077 -1.5284 -0.2421 8 6 6.0552 -1.1160 0.2919 9 8 6.1322 -0.2611 1.1487 10 7 7.1752 -1.6929 -0.1870 11 6 8.4855 -1.2877 0.3278 12 6 9.5644 -2.0783 -0.3664 13 1 9.3004 -2.8092 -1.1164 14 6 10.8885 -1.8678 -0.0448 15 7 11.2100 -0.9774 0.8681 16 14 12.2257 -2.8484 -0.9049 17 1 12.6645 -2.1234 -2.1245 18 1 13.3815 -3.0194 0.0119 19 1 11.6945 -4.1817 -1.2859 20 6 2.3114 -1.1995 0.0005 21 1 2.3603 -1.6244 -1.0020 22 6 1.7673 -2.2173 0.9697 23 6 1.3437 -3.4507 0.5113 24 6 0.8487 -4.3859 1.4009 25 6 0.7688 -4.0843 2.7476 26 6 1.1876 -2.8490 3.2052 27 6 1.6867 -1.9154 2.3163 28 1 -0.3633 1.0255 0.0668 29 1 -0.3633 -0.4548 -0.9215 30 1 -0.3633 -0.5706 0.8546 31 1 4.2602 1.2602 0.7277 32 1 4.1250 0.7579 -0.9845 33 1 4.6683 -1.3384 -1.3146 34 1 4.5526 -2.5910 -0.0554 35 1 7.1136 -2.3764 -0.8725 36 1 8.6364 -0.2244 0.1409 37 1 8.5292 -1.4778 1.4002 38 1 12.1415 -0.8296 1.0945 39 1 1.4024 -3.6848 -0.5414 40 1 0.5219 -5.3512 1.0434 41 1 0.3796 -4.8140 3.4422 42 1 1.1248 -2.6132 4.2572 43 1 2.0143 -0.9504 2.6738 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801948356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:52 Heat of formation + Delta-G solvation = -38.851037 kcal Electronic energy + Delta-G solvation = -26212.442799 eV Core-core repulsion = 22450.298029 eV Total energy + Delta-G solvation = -3762.144771 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.20006 -40.34894 -39.85709 -38.15922 -36.14644 -35.38863 -34.32266 -32.55793 -31.72365 -30.98111 -29.23557 -28.06198 -26.94777 -24.83955 -23.94863 -23.32674 -22.12929 -21.35050 -21.03501 -18.98888 -18.23423 -17.91403 -17.50235 -17.32977 -16.94391 -16.57922 -16.49883 -16.01833 -15.90805 -15.58827 -15.39612 -15.00835 -14.79485 -14.51903 -14.25914 -14.17321 -14.00991 -13.88243 -13.79352 -13.57195 -13.36743 -13.22296 -12.90296 -12.76812 -12.62272 -12.20710 -12.08600 -11.87342 -11.46142 -11.17765 -10.78541 -10.77881 -10.27945 -9.79353 -9.77994 -9.72180 -9.55956 -8.27064 -6.43430 0.35694 0.56693 1.26786 1.44871 1.47042 1.58123 1.71886 1.80940 2.22529 2.41325 2.78785 2.91683 3.08252 3.28349 3.55743 3.79620 3.88787 3.96835 4.16539 4.20332 4.22530 4.29628 4.35213 4.37359 4.56716 4.61347 4.66458 4.76159 4.79895 5.02619 5.06974 5.15354 5.20199 5.24047 5.28078 5.50758 5.53051 5.62992 5.68388 5.72978 5.82789 5.86267 5.88142 6.13942 6.68420 6.88590 6.96397 7.26394 7.55571 8.85054 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015329 B = 0.003038 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.192267 B = 9215.114051 C =10350.466795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.613 5.613 3 C 0.518 3.482 4 O -0.563 6.563 5 C 0.009 3.991 6 N -0.498 5.498 7 C 0.041 3.959 8 C 0.496 3.504 9 O -0.586 6.586 10 N -0.706 5.706 11 C 0.269 3.731 12 C -0.553 4.553 13 H 0.087 0.913 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.983 3.017 17 H -0.272 1.272 18 H -0.287 1.287 19 H -0.253 1.253 20 C 0.328 3.672 21 H 0.109 0.891 22 C -0.103 4.103 23 C -0.098 4.098 24 C -0.125 4.125 25 C -0.114 4.114 26 C -0.140 4.140 27 C -0.092 4.092 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.140 0.860 35 H 0.410 0.590 36 H -0.014 1.014 37 H -0.015 1.015 38 H 0.268 0.732 39 H 0.152 0.848 40 H 0.149 0.851 41 H 0.140 0.860 42 H 0.125 0.875 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.147 -10.511 -5.313 27.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.347 5.347 3 C 0.305 3.695 4 O -0.442 6.442 5 C -0.121 4.121 6 N -0.224 5.224 7 C -0.090 4.090 8 C 0.283 3.717 9 O -0.466 6.466 10 N -0.357 5.357 11 C 0.146 3.854 12 C -0.591 4.591 13 H 0.105 0.895 14 C -0.197 4.197 15 N -0.571 5.571 16 Si 0.807 3.193 17 H -0.197 1.197 18 H -0.213 1.213 19 H -0.177 1.177 20 C 0.137 3.863 21 H 0.126 0.874 22 C -0.105 4.105 23 C -0.117 4.117 24 C -0.143 4.143 25 C -0.132 4.132 26 C -0.158 4.158 27 C -0.110 4.110 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.158 0.842 35 H 0.246 0.754 36 H 0.004 0.996 37 H 0.003 0.997 38 H 0.076 0.924 39 H 0.170 0.830 40 H 0.167 0.833 41 H 0.158 0.842 42 H 0.143 0.857 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -25.163 -9.292 -4.054 27.128 hybrid contribution 1.152 0.189 -0.622 1.322 sum -24.011 -9.103 -4.677 26.101 Atomic orbital electron populations 1.21685 0.75428 1.03455 1.03581 1.48585 1.07688 1.06047 1.72337 1.21138 0.89360 0.84631 0.74340 1.90705 1.80134 1.20976 1.52337 1.23063 0.94287 0.91557 1.03216 1.65201 1.01659 1.01295 1.54230 1.22269 0.86857 1.01220 0.98664 1.21120 0.86922 0.81593 0.82106 1.90673 1.87933 1.34205 1.33762 1.46107 1.06007 1.41621 1.42009 1.18491 0.79895 0.94010 0.93052 1.21638 0.91311 1.22844 1.23304 0.89534 1.26069 1.01748 0.96291 0.95629 1.70143 1.19187 1.35055 1.32738 0.85176 0.77231 0.79127 0.77797 1.19706 1.21279 1.17651 1.21289 0.83204 0.84059 0.97786 0.87368 1.19657 1.01852 0.95278 0.93710 1.21291 0.97283 0.91750 1.01339 1.21450 0.99479 1.00273 0.93047 1.21505 0.98558 0.96351 0.96829 1.21340 0.99865 0.94539 1.00007 1.20911 0.97439 0.99095 0.93605 0.90948 0.89111 0.90953 0.88477 0.88139 0.87210 0.84214 0.75410 0.99585 0.99728 0.92368 0.83042 0.83289 0.84197 0.85708 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.53 10.72 127.77 1.37 2.89 16 2 N -0.61 -12.78 3.12 -833.94 -2.60 -15.37 16 3 C 0.52 14.78 8.20 87.84 0.72 15.49 16 4 O -0.56 -20.24 17.50 -3.03 -0.05 -20.30 16 5 C 0.01 0.26 5.73 85.50 0.49 0.75 16 6 N -0.50 -12.41 4.65 -887.98 -4.13 -16.54 16 7 C 0.04 0.91 5.10 85.56 0.44 1.34 16 8 C 0.50 18.24 7.63 87.66 0.67 18.91 16 9 O -0.59 -27.95 15.12 -3.03 -0.05 -27.99 16 10 N -0.71 -27.64 5.55 -466.79 -2.59 -30.23 16 11 C 0.27 14.35 5.43 85.64 0.46 14.81 16 12 C -0.55 -29.23 9.28 25.60 0.24 -28.99 16 13 H 0.09 4.06 7.60 -2.91 -0.02 4.04 16 14 C 0.00 0.11 5.46 84.65 0.46 0.57 16 15 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 16 Si 0.98 41.55 29.54 68.60 2.03 43.58 16 17 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 18 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 20 C 0.33 5.86 3.04 128.11 0.39 6.25 16 21 H 0.11 1.22 7.57 -2.39 -0.02 1.21 16 22 C -0.10 -1.79 4.30 -19.86 -0.09 -1.87 16 23 C -0.10 -1.17 9.68 22.27 0.22 -0.96 16 24 C -0.12 -1.44 10.05 22.27 0.22 -1.21 16 25 C -0.11 -1.59 10.05 22.27 0.22 -1.37 16 26 C -0.14 -2.54 10.05 22.27 0.22 -2.32 16 27 C -0.09 -1.97 9.26 22.27 0.21 -1.76 16 28 H 0.07 1.30 7.66 -2.39 -0.02 1.29 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.03 7.56 -2.39 -0.02 1.01 16 31 H 0.10 3.45 7.47 -2.39 -0.02 3.43 16 32 H 0.10 2.47 7.61 -2.39 -0.02 2.46 16 33 H 0.11 1.66 7.83 -2.39 -0.02 1.64 16 34 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.41 12.60 8.32 -92.71 -0.77 11.83 16 36 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 37 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 38 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 39 H 0.15 0.90 7.97 -2.91 -0.02 0.88 16 40 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 41 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 42 H 0.12 2.05 8.06 -2.91 -0.02 2.02 16 43 H 0.10 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -80.18 366.72 -0.60 -80.78 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.25 Total: 19.28 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: 6.25 Total: 22.54 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -9.03 Total: -117.89 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -0.10 Total: -48.29 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -80.18 -0.60 -80.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801948356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.932 kcal (2) G-P(sol) polarization free energy of solvation -80.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds