Wall clock time and date at job start Tue Mar 31 2020 11:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34855 * 125.20865 * 2 1 4 4 O 1.21279 * 125.74526 * 0.45021 * 3 2 1 5 5 C 1.51302 * 108.50349 * 180.46440 * 3 2 1 6 6 N 1.48243 * 104.76606 * 16.76789 * 5 3 2 7 7 C 1.46902 * 110.99799 * 214.71126 * 6 5 3 8 8 C 1.50700 * 109.47029 * 284.10578 * 7 6 5 9 9 O 1.21282 * 120.00066 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99879 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99764 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.47166 * 180.02562 * 11 10 8 13 13 H 1.07996 * 119.99754 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00294 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99734 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00252 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47017 * 59.99906 * 16 14 12 18 18 H 1.48499 * 109.47416 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47228 * 300.00245 * 16 14 12 20 20 C 1.46809 * 125.20501 * 180.02562 * 2 1 3 21 21 H 1.08998 * 110.11220 * 281.53561 * 20 2 1 22 22 C 1.50698 * 110.16941 * 43.16241 * 20 2 1 23 23 C 1.38234 * 119.99802 * 241.84441 * 22 20 2 24 24 C 1.38236 * 120.00299 * 179.79126 * 23 22 20 25 25 C 1.38242 * 119.99312 * 0.44375 * 24 23 22 26 26 C 1.38227 * 120.00239 * 359.80967 * 25 24 23 27 27 C 1.38232 * 120.00163 * 62.12350 * 22 20 2 28 28 H 1.08997 * 109.47104 * 275.02769 * 1 2 3 29 29 H 1.09004 * 109.46799 * 35.02068 * 1 2 3 30 30 H 1.08998 * 109.47072 * 155.02145 * 1 2 3 31 31 H 1.08999 * 110.38403 * 257.94911 * 5 3 2 32 32 H 1.09003 * 110.38138 * 135.58736 * 5 3 2 33 33 H 1.09007 * 109.46966 * 164.10968 * 7 6 5 34 34 H 1.08998 * 109.47515 * 44.10921 * 7 6 5 35 35 H 0.97001 * 120.00182 * 0.02562 * 10 8 7 36 36 H 1.09007 * 109.47007 * 60.00639 * 11 10 8 37 37 H 1.08998 * 109.47287 * 300.00706 * 11 10 8 38 38 H 0.97004 * 119.99922 * 359.97438 * 15 14 12 39 39 H 1.08006 * 120.00295 * 0.02562 * 23 22 20 40 40 H 1.08004 * 120.00454 * 180.27607 * 24 23 22 41 41 H 1.08000 * 119.99605 * 179.83130 * 25 24 23 42 42 H 1.07999 * 120.00143 * 179.97438 * 26 25 24 43 43 H 1.07997 * 119.99849 * 359.97438 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2425 1.1018 0.0000 4 8 1.8468 2.2482 0.0077 5 6 3.6917 0.6670 -0.0116 6 7 3.6563 -0.7543 -0.4316 7 6 4.7076 -1.5285 0.2417 8 6 6.0400 -1.2245 -0.3935 9 8 6.1072 -0.4399 -1.3158 10 7 7.1571 -1.8239 0.0641 11 6 8.4524 -1.5280 -0.5530 12 6 9.5310 -2.3223 0.1376 13 1 9.2769 -2.9819 0.9541 14 6 10.8421 -2.2070 -0.2730 15 7 11.1515 -1.4034 -1.2671 16 14 12.1789 -3.1920 0.5824 17 1 11.8874 -4.6420 0.4490 18 1 13.4921 -2.8911 -0.0422 19 1 12.2200 -2.8257 2.0209 20 6 2.3114 -1.1996 -0.0005 21 1 2.3602 -1.6243 1.0021 22 6 1.7678 -2.2185 -0.9687 23 6 1.3504 -3.4539 -0.5098 24 6 0.8478 -4.3871 -1.3972 25 6 0.7712 -4.0882 -2.7448 26 6 1.1935 -2.8548 -3.2042 27 6 1.6921 -1.9200 -2.3162 28 1 -0.3633 0.0901 1.0237 29 1 -0.3633 0.8416 -0.5898 30 1 -0.3633 -0.9315 -0.4340 31 1 4.1232 0.7575 0.9852 32 1 4.2603 1.2603 -0.7277 33 1 4.4934 -2.5929 0.1449 34 1 4.7383 -1.2585 1.2972 35 1 7.1034 -2.4512 0.8021 36 1 8.6662 -0.4635 -0.4562 37 1 8.4221 -1.7980 -1.6085 38 1 10.4573 -0.8921 -1.7116 39 1 1.4134 -3.6887 0.5425 40 1 0.5174 -5.3507 -1.0381 41 1 0.3810 -4.8182 -3.4384 42 1 1.1341 -2.6215 -4.2570 43 1 2.0221 -0.9564 -2.6752 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801948357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:56 Heat of formation + Delta-G solvation = -16.775636 kcal Electronic energy + Delta-G solvation = -26258.985277 eV Core-core repulsion = 22497.797768 eV Total energy + Delta-G solvation = -3761.187510 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.27338 -39.14352 -38.91310 -37.11987 -34.72829 -34.26383 -32.48576 -31.85047 -31.09992 -29.82254 -27.42119 -27.11469 -25.58023 -23.58849 -22.82865 -22.39866 -21.31038 -20.20792 -19.80549 -17.72087 -17.42676 -16.82007 -16.63507 -16.15942 -15.78869 -15.39140 -15.17695 -14.91107 -14.84891 -14.31509 -13.93449 -13.87794 -13.78100 -13.62079 -13.47572 -13.08165 -12.88877 -12.84705 -12.56838 -12.50345 -12.26765 -12.23396 -11.52354 -11.42221 -11.24340 -11.05696 -10.80291 -10.18621 -10.10631 -9.57857 -9.21317 -9.14626 -9.06476 -8.83754 -8.72989 -8.68187 -8.05718 -6.54524 -4.28723 1.00388 1.20407 2.30540 2.54399 3.16491 3.23813 3.35630 3.37128 3.56334 3.64198 3.98980 4.14512 4.33442 4.43018 4.51457 4.74513 4.78602 4.82453 4.92215 4.97472 5.08624 5.12627 5.19301 5.24427 5.25891 5.35905 5.39701 5.41571 5.56407 5.68930 5.82675 5.94914 6.08815 6.19850 6.29579 6.35013 6.58512 6.74612 6.78037 6.95707 7.18036 7.24475 7.60825 7.86950 8.22655 8.40025 8.67235 8.90727 9.45080 10.85598 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.003078 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.978063 B = 9093.785456 C =10235.459856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.622 5.622 3 C 0.521 3.479 4 O -0.519 6.519 5 C 0.004 3.996 6 N -0.475 5.475 7 C 0.025 3.975 8 C 0.502 3.498 9 O -0.535 6.535 10 N -0.708 5.708 11 C 0.242 3.758 12 C -0.625 4.625 13 H 0.057 0.943 14 C 0.023 3.977 15 N -0.901 5.901 16 Si 1.075 2.925 17 H -0.286 1.286 18 H -0.280 1.280 19 H -0.287 1.287 20 C 0.325 3.675 21 H 0.072 0.928 22 C -0.096 4.096 23 C -0.105 4.105 24 C -0.126 4.126 25 C -0.111 4.111 26 C -0.125 4.125 27 C -0.068 4.068 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.392 0.608 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.273 0.727 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.035 -5.735 3.927 25.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.358 5.358 3 C 0.308 3.692 4 O -0.394 6.394 5 C -0.126 4.126 6 N -0.201 5.201 7 C -0.107 4.107 8 C 0.285 3.715 9 O -0.412 6.412 10 N -0.358 5.358 11 C 0.121 3.879 12 C -0.663 4.663 13 H 0.075 0.925 14 C -0.183 4.183 15 N -0.535 5.535 16 Si 0.903 3.097 17 H -0.213 1.213 18 H -0.205 1.205 19 H -0.213 1.213 20 C 0.132 3.868 21 H 0.090 0.910 22 C -0.098 4.098 23 C -0.124 4.124 24 C -0.144 4.144 25 C -0.129 4.129 26 C -0.143 4.143 27 C -0.086 4.086 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.149 0.851 33 H 0.126 0.874 34 H 0.090 0.910 35 H 0.225 0.775 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.083 0.917 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -22.530 -4.876 2.684 23.208 hybrid contribution -1.733 -0.164 1.210 2.120 sum -24.264 -5.041 3.894 25.086 Atomic orbital electron populations 1.21501 0.76995 1.03357 1.01926 1.48497 1.06687 1.06538 1.74039 1.21077 0.88829 0.84608 0.74674 1.90742 1.79531 1.19269 1.49836 1.23275 0.94871 0.91040 1.03435 1.65297 0.99993 1.01787 1.52984 1.22330 0.91277 1.00254 0.96792 1.20073 0.85036 0.82085 0.84295 1.90678 1.86474 1.35278 1.28763 1.46240 1.08041 1.44875 1.36606 1.19161 0.78620 0.96410 0.93725 1.22051 0.93903 1.29400 1.20925 0.92487 1.25877 0.98919 0.97351 0.96177 1.70764 1.37605 1.24489 1.20662 0.83450 0.75662 0.75309 0.75320 1.21271 1.20544 1.21293 1.21097 0.85135 0.84603 0.95952 0.91043 1.19641 1.01163 0.94440 0.94526 1.21003 0.98667 0.92945 0.99785 1.21075 1.00502 0.99314 0.93470 1.21219 0.99182 0.96765 0.95753 1.21215 0.99322 0.93910 0.99868 1.20997 0.95642 0.99713 0.92281 0.92398 0.90745 0.90554 0.89430 0.85128 0.87388 0.91050 0.77516 0.96526 0.96478 0.91660 0.86032 0.85934 0.86085 0.85922 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 10.82 59.85 0.65 1.53 16 2 N -0.62 -6.81 3.12 -177.53 -0.55 -7.36 16 3 C 0.52 7.18 8.19 -10.65 -0.09 7.09 16 4 O -0.52 -8.82 17.81 5.56 0.10 -8.72 16 5 C 0.00 0.05 5.97 -3.94 -0.02 0.03 16 6 N -0.48 -6.14 4.54 -232.00 -1.05 -7.19 16 7 C 0.03 0.32 5.15 -4.97 -0.03 0.29 16 8 C 0.50 9.27 7.69 -10.98 -0.08 9.18 16 9 O -0.53 -12.12 15.60 5.56 0.09 -12.03 16 10 N -0.71 -14.11 5.55 -61.47 -0.34 -14.45 16 11 C 0.24 6.21 4.74 -5.19 -0.02 6.19 16 12 C -0.62 -16.78 9.28 -34.44 -0.32 -17.10 16 13 H 0.06 1.44 7.60 -52.49 -0.40 1.04 16 14 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 15 N -0.90 -27.01 13.65 55.43 0.76 -26.25 16 16 Si 1.08 24.00 29.90 -169.99 -5.08 18.92 16 17 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.29 -6.06 7.11 56.52 0.40 -5.65 16 20 C 0.33 3.32 3.00 -126.72 -0.38 2.94 16 21 H 0.07 0.60 7.57 -51.93 -0.39 0.20 16 22 C -0.10 -0.96 3.97 -104.63 -0.42 -1.37 16 23 C -0.10 -0.87 9.68 -39.58 -0.38 -1.25 16 24 C -0.13 -0.99 10.05 -39.58 -0.40 -1.39 16 25 C -0.11 -0.93 10.05 -39.58 -0.40 -1.33 16 26 C -0.13 -1.20 10.05 -39.59 -0.40 -1.60 16 27 C -0.07 -0.74 9.41 -39.58 -0.37 -1.12 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 30 H 0.08 0.55 7.13 -51.93 -0.37 0.18 16 31 H 0.09 1.04 7.51 -51.93 -0.39 0.65 16 32 H 0.13 2.03 7.78 -51.93 -0.40 1.63 16 33 H 0.11 1.15 8.08 -51.92 -0.42 0.73 16 34 H 0.07 0.71 7.66 -51.93 -0.40 0.32 16 35 H 0.39 6.63 8.32 -40.82 -0.34 6.29 16 36 H 0.02 0.47 8.01 -51.92 -0.42 0.05 16 37 H 0.02 0.49 8.01 -51.93 -0.42 0.07 16 38 H 0.27 8.29 7.22 -40.82 -0.29 7.99 16 39 H 0.12 0.75 7.97 -52.48 -0.42 0.34 16 40 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 41 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 366.33 15.07 5.52 5.52 Total: -1.00 -34.78 366.33 -9.32 -44.09 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.99 Total: 4.85 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -2.76 Total: 2.63 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -1.19 Total: -55.26 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: 0.19 Total: -20.75 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -5.08 Total: 18.92 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.78 -9.32 -44.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801948357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.319 kcal (2) G-P(sol) polarization free energy of solvation -34.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds