Wall clock time and date at job start Tue Mar 31 2020 11:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42098 * 108.57829 * 2 1 4 4 O 1.42097 * 108.57875 * 228.97418 * 2 1 3 5 5 C 1.81401 * 101.92064 * 114.48583 * 2 1 3 6 6 C 1.52999 * 109.47106 * 180.02562 * 5 2 1 7 7 N 1.46503 * 109.46983 * 180.02562 * 6 5 2 8 8 C 1.34778 * 119.99740 * 269.99603 * 7 6 5 9 9 O 1.21279 * 119.99929 * 185.94775 * 8 7 6 10 10 C 1.50707 * 119.99788 * 5.94977 * 8 7 6 11 11 C 1.52997 * 109.46573 * 180.15897 * 10 8 7 12 12 C 1.53007 * 109.47053 * 179.97438 * 11 10 8 13 13 C 1.52991 * 109.47341 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47186 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99715 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00160 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99764 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00027 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47171 * 59.99987 * 18 16 14 20 20 H 1.48499 * 109.47334 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47365 * 299.99942 * 18 16 14 22 22 C 1.46493 * 120.00053 * 89.99621 * 7 6 5 23 23 C 1.53003 * 117.49881 * 196.32896 * 22 7 6 24 24 C 1.52996 * 60.00168 * 252.51320 * 23 22 7 25 25 H 1.08996 * 109.47179 * 305.51507 * 1 2 3 26 26 H 1.09003 * 109.46823 * 65.51516 * 1 2 3 27 27 H 1.08999 * 109.46930 * 185.51305 * 1 2 3 28 28 H 1.08996 * 109.47195 * 60.00071 * 5 2 1 29 29 H 1.09000 * 109.46965 * 299.99938 * 5 2 1 30 30 H 1.08996 * 109.47211 * 59.99866 * 6 5 2 31 31 H 1.09000 * 109.46983 * 299.99712 * 6 5 2 32 32 H 1.08998 * 109.46855 * 300.15606 * 10 8 7 33 33 H 1.09000 * 109.47373 * 60.16085 * 10 8 7 34 34 H 1.09004 * 109.47530 * 299.99794 * 11 10 8 35 35 H 1.09004 * 109.47418 * 60.00426 * 11 10 8 36 36 H 1.09004 * 109.46853 * 300.00293 * 12 11 10 37 37 H 1.09004 * 109.46592 * 60.00004 * 12 11 10 38 38 H 1.09004 * 109.47365 * 299.99954 * 13 12 11 39 39 H 1.09004 * 109.47296 * 60.00409 * 13 12 11 40 40 H 0.97005 * 120.00059 * 180.02562 * 17 16 14 41 41 H 1.08997 * 115.55211 * 342.04483 * 22 7 6 42 42 H 1.09005 * 117.49424 * 0.02562 * 23 22 7 43 43 H 1.09003 * 117.49729 * 145.01875 * 23 22 7 44 44 H 1.09001 * 117.49702 * 252.50908 * 24 23 22 45 45 H 1.09006 * 117.51768 * 107.47758 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8184 1.7985 7 7 4.0080 -1.4131 3.1028 8 6 4.1467 -0.6246 4.1870 9 8 4.5027 -1.1029 5.2431 10 6 3.8594 0.8515 4.0870 11 6 4.0961 1.5103 5.4473 12 6 3.8051 3.0090 5.3457 13 6 4.0424 3.6680 6.7059 14 6 3.7551 5.1440 6.6059 15 1 3.4356 5.5695 5.6661 16 6 3.9012 5.9514 7.7140 17 7 4.2907 5.4333 8.8583 18 14 3.5444 7.7808 7.5903 19 1 2.1307 7.9829 7.1829 20 1 3.7748 8.4205 8.9104 21 1 4.4433 8.3932 6.5793 22 6 4.1599 -2.8647 3.2284 23 6 4.0924 -3.4629 4.6351 24 6 5.4319 -3.3864 3.8998 25 1 -0.3633 0.5970 0.8364 26 1 -0.3633 0.4259 -0.9353 27 1 -0.3633 -1.0229 0.0987 28 1 1.7611 -1.7369 1.6665 29 1 1.7610 -0.1170 2.4042 30 1 4.1328 0.1830 1.7474 31 1 4.1335 -1.4368 1.0095 32 1 4.5202 1.3008 3.3457 33 1 2.8221 1.0002 3.7868 34 1 3.4353 1.0610 6.1887 35 1 5.1334 1.3617 5.7475 36 1 4.4662 3.4581 4.6045 37 1 2.7679 3.1581 5.0454 38 1 3.3816 3.2191 7.4475 39 1 5.0797 3.5190 7.0058 40 1 4.3931 6.0013 9.6381 41 1 3.7449 -3.4534 2.4104 42 1 3.9346 -2.7763 5.4669 43 1 3.6326 -4.4453 4.7426 44 1 5.8535 -4.3186 3.5236 45 1 6.1560 -2.6495 4.2475 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807150556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:15 Heat of formation + Delta-G solvation = -83.282124 kcal Electronic energy + Delta-G solvation = -24695.359115 eV Core-core repulsion = 21034.438867 eV Total energy + Delta-G solvation = -3660.920247 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.61529 -37.40015 -36.86992 -36.46334 -35.68042 -34.69212 -32.54582 -30.99802 -29.99642 -29.63810 -25.92343 -24.29479 -23.43949 -22.47064 -21.62649 -19.99534 -19.33111 -19.07612 -17.70534 -16.82095 -16.73313 -16.43237 -16.27602 -16.03433 -15.65263 -14.79291 -14.50219 -14.42440 -14.32375 -13.84392 -13.77095 -13.66316 -13.36822 -13.12948 -12.59147 -12.49799 -12.42305 -12.39248 -11.99887 -11.73102 -11.66948 -11.54189 -11.51458 -11.29563 -11.06799 -10.94163 -10.54076 -10.52656 -10.51705 -10.40197 -9.60991 -9.54729 -9.19985 -8.98741 -8.69179 -8.29295 -5.94279 -3.96751 -0.51843 2.24251 2.45674 2.58592 3.18167 3.36546 3.40766 3.43313 3.54009 3.70368 4.08256 4.10649 4.32630 4.36911 4.48799 4.51148 4.67722 4.73101 4.81984 4.91697 4.93717 5.18603 5.21880 5.24279 5.30709 5.37773 5.41127 5.59539 5.80269 5.87728 6.10813 6.17657 6.26459 6.51150 6.53344 6.82276 6.98317 7.10938 7.21343 7.74640 7.90202 8.06587 8.08694 8.48929 9.10806 9.66902 11.17026 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.003123 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.327570 B = 8962.876943 C =11138.292790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 2.425 3.575 3 O -0.929 6.929 4 O -0.939 6.939 5 C -0.643 4.643 6 C 0.127 3.873 7 N -0.587 5.587 8 C 0.515 3.485 9 O -0.518 6.518 10 C -0.144 4.144 11 C -0.103 4.103 12 C -0.111 4.111 13 C 0.021 3.979 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.063 3.937 23 C -0.191 4.191 24 C -0.185 4.185 25 H 0.132 0.868 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.127 0.873 42 H 0.138 0.862 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.828 -19.199 -19.080 27.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.605 3.395 3 O -0.926 6.926 4 O -0.936 6.936 5 C -0.772 4.772 6 C 0.002 3.998 7 N -0.319 5.319 8 C 0.305 3.695 9 O -0.394 6.394 10 C -0.184 4.184 11 C -0.141 4.141 12 C -0.149 4.149 13 C -0.016 4.016 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.041 4.041 23 C -0.228 4.228 24 C -0.224 4.224 25 H 0.150 0.850 26 H 0.149 0.851 27 H 0.146 0.854 28 H 0.156 0.844 29 H 0.158 0.842 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.145 0.855 42 H 0.156 0.844 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.013 -19.095 -18.966 27.577 hybrid contribution -0.959 0.647 0.521 1.269 sum -6.972 -18.448 -18.445 27.003 Atomic orbital electron populations 1.30253 1.26360 1.11642 1.12162 1.07767 0.78612 0.75905 0.77205 1.93658 1.78876 1.33902 1.86135 1.93611 1.79161 1.67203 1.53617 1.30987 1.07000 1.14928 1.24306 1.21201 0.90214 1.01595 0.86772 1.47367 1.71043 1.05426 1.08059 1.21216 0.76076 0.89545 0.82672 1.90559 1.45008 1.75068 1.28740 1.21968 1.03423 0.90390 1.02608 1.21467 1.02617 0.96674 0.93315 1.21665 0.99960 0.92022 1.01260 1.19083 0.97097 0.94699 0.90742 1.21255 1.45322 0.93450 0.95903 0.92748 1.25037 0.95402 0.98614 0.95482 1.69965 1.47369 1.35594 1.00610 0.86669 0.78787 0.85496 0.77093 1.20292 1.21346 1.20240 1.21703 1.03496 0.80690 0.98221 1.23837 0.99876 1.02211 0.96882 1.23251 0.92056 1.02683 1.04383 0.84982 0.85077 0.85364 0.84390 0.84196 0.88035 0.88361 0.88749 0.89182 0.91781 0.91690 0.93298 0.93439 0.96655 0.96605 0.93000 0.85544 0.84436 0.89363 0.88723 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.78 10.62 101.05 1.07 -0.71 16 2 S 2.42 13.36 5.36 -107.50 -0.58 12.78 16 3 O -0.93 -9.22 18.10 -57.83 -1.05 -10.27 16 4 O -0.94 -8.25 18.10 -57.83 -1.05 -9.29 16 5 C -0.64 -2.98 6.13 37.16 0.23 -2.75 16 6 C 0.13 0.92 5.22 -4.04 -0.02 0.89 16 7 N -0.59 -5.87 2.84 -166.11 -0.47 -6.34 16 8 C 0.51 6.84 7.46 -10.98 -0.08 6.75 16 9 O -0.52 -8.55 11.73 5.56 0.07 -8.49 16 10 C -0.14 -1.88 4.40 -27.88 -0.12 -2.00 16 11 C -0.10 -1.80 4.50 -26.73 -0.12 -1.92 16 12 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 13 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 14 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 15 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.55 13.29 55.43 0.74 -26.82 16 18 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 C 0.06 0.58 6.61 -67.93 -0.45 0.13 16 23 C -0.19 -2.04 9.63 -26.73 -0.26 -2.30 16 24 C -0.19 -1.89 9.87 -26.73 -0.26 -2.16 16 25 H 0.13 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 27 H 0.13 0.11 8.14 -51.92 -0.42 -0.32 16 28 H 0.14 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.14 0.55 6.90 -51.92 -0.36 0.20 16 30 H 0.10 0.71 6.48 -51.93 -0.34 0.38 16 31 H 0.10 0.55 8.07 -51.93 -0.42 0.13 16 32 H 0.09 1.09 7.22 -51.93 -0.37 0.72 16 33 H 0.09 0.97 6.90 -51.93 -0.36 0.61 16 34 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 35 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.14 1.92 5.22 -52.12 -0.27 1.65 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.10 1.24 7.60 -51.93 -0.39 0.85 16 LS Contribution 379.60 15.07 5.72 5.72 Total: -1.00 -39.08 379.60 -9.89 -48.97 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -7.55 Total: -3.33 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -0.70 Total: -19.87 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.26 Total: -33.16 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -2.03 Total: -28.05 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 13.36 SS G_CDS: -0.58 Total: 12.78 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -39.08 -9.89 -48.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807150556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.316 kcal (2) G-P(sol) polarization free energy of solvation -39.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds