Wall clock time and date at job start Tue Mar 31 2020 11:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42098 * 108.57829 * 2 1 4 4 O 1.42097 * 108.57875 * 228.97418 * 2 1 3 5 5 C 1.81401 * 101.92064 * 114.48583 * 2 1 3 6 6 C 1.52999 * 109.47106 * 180.02562 * 5 2 1 7 7 N 1.46503 * 109.46983 * 180.02562 * 6 5 2 8 8 C 1.34778 * 119.99740 * 269.99603 * 7 6 5 9 9 O 1.21279 * 119.99929 * 185.94775 * 8 7 6 10 10 C 1.50707 * 119.99788 * 5.94977 * 8 7 6 11 11 C 1.52997 * 109.46573 * 180.15897 * 10 8 7 12 12 C 1.53007 * 109.47053 * 179.97438 * 11 10 8 13 13 C 1.52991 * 109.47341 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47186 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99715 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00160 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99764 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00027 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47171 * 59.99987 * 18 16 14 20 20 H 1.48499 * 109.47334 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47365 * 299.99942 * 18 16 14 22 22 C 1.46493 * 120.00053 * 89.99621 * 7 6 5 23 23 C 1.53003 * 117.49881 * 196.32896 * 22 7 6 24 24 C 1.52996 * 60.00168 * 252.51320 * 23 22 7 25 25 H 1.08996 * 109.47179 * 305.51507 * 1 2 3 26 26 H 1.09003 * 109.46823 * 65.51516 * 1 2 3 27 27 H 1.08999 * 109.46930 * 185.51305 * 1 2 3 28 28 H 1.08996 * 109.47195 * 60.00071 * 5 2 1 29 29 H 1.09000 * 109.46965 * 299.99938 * 5 2 1 30 30 H 1.08996 * 109.47211 * 59.99866 * 6 5 2 31 31 H 1.09000 * 109.46983 * 299.99712 * 6 5 2 32 32 H 1.08998 * 109.46855 * 300.15606 * 10 8 7 33 33 H 1.09000 * 109.47373 * 60.16085 * 10 8 7 34 34 H 1.09004 * 109.47530 * 299.99794 * 11 10 8 35 35 H 1.09004 * 109.47418 * 60.00426 * 11 10 8 36 36 H 1.09004 * 109.46853 * 300.00293 * 12 11 10 37 37 H 1.09004 * 109.46592 * 60.00004 * 12 11 10 38 38 H 1.09004 * 109.47365 * 299.99954 * 13 12 11 39 39 H 1.09004 * 109.47296 * 60.00409 * 13 12 11 40 40 H 0.97005 * 120.00059 * 180.02562 * 17 16 14 41 41 H 1.08997 * 115.55211 * 342.04483 * 22 7 6 42 42 H 1.09005 * 117.49424 * 0.02562 * 23 22 7 43 43 H 1.09003 * 117.49729 * 145.01875 * 23 22 7 44 44 H 1.09001 * 117.49702 * 252.50908 * 24 23 22 45 45 H 1.09006 * 117.51768 * 107.47758 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8184 1.7985 7 7 4.0080 -1.4131 3.1028 8 6 4.1467 -0.6246 4.1870 9 8 4.5027 -1.1029 5.2431 10 6 3.8594 0.8515 4.0870 11 6 4.0961 1.5103 5.4473 12 6 3.8051 3.0090 5.3457 13 6 4.0424 3.6680 6.7059 14 6 3.7551 5.1440 6.6059 15 1 3.4356 5.5695 5.6661 16 6 3.9012 5.9514 7.7140 17 7 4.2907 5.4333 8.8583 18 14 3.5444 7.7808 7.5903 19 1 2.1307 7.9829 7.1829 20 1 3.7748 8.4205 8.9104 21 1 4.4433 8.3932 6.5793 22 6 4.1599 -2.8647 3.2284 23 6 4.0924 -3.4629 4.6351 24 6 5.4319 -3.3864 3.8998 25 1 -0.3633 0.5970 0.8364 26 1 -0.3633 0.4259 -0.9353 27 1 -0.3633 -1.0229 0.0987 28 1 1.7611 -1.7369 1.6665 29 1 1.7610 -0.1170 2.4042 30 1 4.1328 0.1830 1.7474 31 1 4.1335 -1.4368 1.0095 32 1 4.5202 1.3008 3.3457 33 1 2.8221 1.0002 3.7868 34 1 3.4353 1.0610 6.1887 35 1 5.1334 1.3617 5.7475 36 1 4.4662 3.4581 4.6045 37 1 2.7679 3.1581 5.0454 38 1 3.3816 3.2191 7.4475 39 1 5.0797 3.5190 7.0058 40 1 4.3931 6.0013 9.6381 41 1 3.7449 -3.4534 2.4104 42 1 3.9346 -2.7763 5.4669 43 1 3.6326 -4.4453 4.7426 44 1 5.8535 -4.3186 3.5236 45 1 6.1560 -2.6495 4.2475 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807150556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:14 Heat of formation + Delta-G solvation = -111.346397 kcal Electronic energy + Delta-G solvation = -24696.576073 eV Core-core repulsion = 21034.438867 eV Total energy + Delta-G solvation = -3662.137205 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.54550 -37.94246 -37.83457 -37.02015 -36.70402 -36.08828 -34.50158 -31.71014 -31.24567 -30.22911 -27.65164 -25.12579 -24.62069 -23.28958 -23.01058 -21.66220 -20.02280 -19.74349 -18.42666 -18.40239 -17.40441 -17.37673 -16.98035 -16.83818 -16.63966 -16.51826 -15.65890 -15.55347 -15.04449 -14.77487 -14.51692 -14.28338 -14.07328 -13.87130 -13.85081 -13.65606 -13.58201 -13.25690 -13.06264 -12.96387 -12.83978 -12.59706 -12.42729 -12.34553 -12.22099 -12.13944 -11.97870 -11.93158 -11.54194 -11.37757 -11.33346 -11.25672 -11.10278 -10.54131 -10.43601 -9.52562 -8.18459 -6.30572 -0.90709 1.40622 1.44569 1.46904 1.52415 1.79358 1.91268 2.42341 2.77034 2.95005 3.14235 3.18179 3.44293 3.63816 3.73458 3.92427 4.00798 4.05230 4.10314 4.13855 4.17407 4.26560 4.34441 4.44852 4.54983 4.62726 4.70406 4.76765 4.83213 4.85854 4.95621 5.06216 5.07913 5.16530 5.31536 5.33952 5.37481 5.56345 5.69090 5.77659 5.87989 6.23230 6.26059 6.87584 7.12006 7.39039 8.93559 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.003123 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.327570 B = 8962.876943 C =11138.292790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.641 4.641 2 S 2.435 3.565 3 O -0.981 6.981 4 O -0.977 6.977 5 C -0.635 4.635 6 C 0.109 3.891 7 N -0.578 5.578 8 C 0.510 3.490 9 O -0.561 6.561 10 C -0.139 4.139 11 C -0.093 4.093 12 C -0.098 4.098 13 C 0.021 3.979 14 C -0.543 4.543 15 H 0.065 0.935 16 C -0.005 4.005 17 N -0.938 5.938 18 Si 0.968 3.032 19 H -0.263 1.263 20 H -0.285 1.285 21 H -0.266 1.266 22 C 0.073 3.927 23 C -0.202 4.202 24 C -0.192 4.192 25 H 0.148 0.852 26 H 0.135 0.865 27 H 0.155 0.845 28 H 0.169 0.831 29 H 0.151 0.849 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.048 0.952 35 H 0.042 0.958 36 H 0.057 0.943 37 H 0.063 0.937 38 H -0.013 1.013 39 H -0.017 1.017 40 H 0.263 0.737 41 H 0.169 0.831 42 H 0.102 0.898 43 H 0.111 0.889 44 H 0.119 0.881 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.958 -19.577 -21.573 30.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.621 3.379 3 O -0.978 6.978 4 O -0.974 6.974 5 C -0.765 4.765 6 C -0.015 4.015 7 N -0.309 5.309 8 C 0.300 3.700 9 O -0.440 6.440 10 C -0.178 4.178 11 C -0.131 4.131 12 C -0.136 4.136 13 C -0.016 4.016 14 C -0.581 4.581 15 H 0.083 0.917 16 C -0.203 4.203 17 N -0.578 5.578 18 Si 0.792 3.208 19 H -0.188 1.188 20 H -0.210 1.210 21 H -0.191 1.191 22 C -0.031 4.031 23 C -0.240 4.240 24 C -0.230 4.230 25 H 0.166 0.834 26 H 0.154 0.846 27 H 0.173 0.827 28 H 0.186 0.814 29 H 0.169 0.831 30 H 0.118 0.882 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.005 0.995 39 H 0.002 0.998 40 H 0.072 0.928 41 H 0.186 0.814 42 H 0.120 0.880 43 H 0.129 0.871 44 H 0.138 0.862 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.124 -19.477 -21.526 30.145 hybrid contribution -0.318 0.700 1.334 1.540 sum -8.442 -18.777 -20.192 28.837 Atomic orbital electron populations 1.30121 1.22080 1.13925 1.13232 1.07158 0.79849 0.74177 0.76766 1.93594 1.80893 1.36435 1.86890 1.93560 1.80899 1.67587 1.55393 1.30886 1.05168 1.16947 1.23473 1.21548 0.92389 1.01957 0.85590 1.47353 1.69684 1.05726 1.08145 1.21204 0.75995 0.89794 0.82958 1.90584 1.47097 1.75716 1.30594 1.21878 1.05793 0.90328 0.99828 1.21229 1.00824 0.95072 0.96003 1.21472 1.01076 0.93390 0.97621 1.19032 0.94338 0.94752 0.93519 1.21733 1.45299 0.94600 0.96498 0.91654 1.26073 0.94941 1.04287 0.94960 1.70123 1.48422 1.37714 1.01545 0.85452 0.79317 0.78631 0.77357 1.18807 1.21023 1.19054 1.22084 1.02244 0.80330 0.98406 1.23709 1.00729 1.02743 0.96803 1.23233 0.91666 1.03112 1.05036 0.83379 0.84620 0.82680 0.81351 0.83099 0.88150 0.86440 0.86969 0.86159 0.93334 0.93936 0.92416 0.91835 0.99505 0.99841 0.92842 0.81431 0.87998 0.87097 0.86249 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.04 10.62 113.37 1.20 0.17 16 2 S 2.44 21.20 5.36 -56.49 -0.30 20.89 16 3 O -0.98 -18.39 18.10 -127.37 -2.30 -20.70 16 4 O -0.98 -15.45 18.10 -127.37 -2.30 -17.76 16 5 C -0.63 -3.58 6.13 71.98 0.44 -3.14 16 6 C 0.11 1.27 5.22 86.38 0.45 1.72 16 7 N -0.58 -10.45 2.84 -797.83 -2.26 -12.71 16 8 C 0.51 13.37 7.46 87.66 0.65 14.02 16 9 O -0.56 -19.38 11.73 -3.03 -0.04 -19.41 16 10 C -0.14 -3.47 4.40 29.85 0.13 -3.34 16 11 C -0.09 -3.34 4.50 30.60 0.14 -3.21 16 12 C -0.10 -4.04 5.15 30.59 0.16 -3.88 16 13 C 0.02 1.14 4.97 29.85 0.15 1.29 16 14 C -0.54 -31.72 9.11 25.60 0.23 -31.49 16 15 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 16 C -0.01 -0.32 5.46 84.66 0.46 0.15 16 17 N -0.94 -59.19 13.29 21.45 0.28 -58.90 16 18 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 19 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 C 0.07 1.17 6.61 44.99 0.30 1.47 16 23 C -0.20 -4.18 9.63 30.59 0.29 -3.89 16 24 C -0.19 -3.78 9.87 30.59 0.30 -3.48 16 25 H 0.15 -0.13 8.14 -2.39 -0.02 -0.15 16 26 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16 27 H 0.15 -0.51 8.14 -2.39 -0.02 -0.53 16 28 H 0.17 -0.05 8.14 -2.39 -0.02 -0.07 16 29 H 0.15 0.59 6.90 -2.39 -0.02 0.58 16 30 H 0.10 1.21 6.48 -2.39 -0.02 1.19 16 31 H 0.12 0.94 8.07 -2.39 -0.02 0.92 16 32 H 0.11 2.42 7.22 -2.39 -0.02 2.40 16 33 H 0.12 2.26 6.90 -2.39 -0.02 2.24 16 34 H 0.05 1.87 8.10 -2.38 -0.02 1.85 16 35 H 0.04 1.68 8.10 -2.38 -0.02 1.67 16 36 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 38 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 39 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 40 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 41 H 0.17 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.10 2.97 5.22 -5.48 -0.03 2.94 16 43 H 0.11 1.72 8.14 -2.39 -0.02 1.71 16 44 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.07 1.75 7.60 -2.38 -0.02 1.73 16 Total: -1.00 -89.57 379.60 0.96 -88.61 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: 0.94 Total: 6.56 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 4.91 Total: -33.62 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: -1.98 Total: -71.62 kcal Atomic # 8 Polarization: -53.22 SS G_CDS: -4.65 Total: -57.87 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 21.20 SS G_CDS: -0.30 Total: 20.89 kcal Total: -89.57 0.96 -88.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807150556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.737 kcal (2) G-P(sol) polarization free energy of solvation -89.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds