Wall clock time and date at job start Tue Mar 31 2020 11:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 111.00072 * 2 1 4 4 C 1.53001 * 109.47549 * 66.04147 * 3 2 1 5 5 O 1.42909 * 109.46728 * 65.00185 * 4 3 2 6 6 C 1.42900 * 113.99762 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.46902 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00180 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99579 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00429 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46895 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47177 * 119.99625 * 11 9 7 14 14 H 1.48500 * 109.47260 * 240.00039 * 11 9 7 15 15 C 1.46893 * 111.00344 * 236.04400 * 2 1 3 16 16 C 1.50706 * 109.47032 * 293.95383 * 15 2 1 17 17 N 1.32407 * 118.52844 * 269.99774 * 16 15 2 18 18 C 1.32398 * 121.52346 * 179.97438 * 17 16 15 19 19 O 1.35273 * 120.89425 * 180.02562 * 18 17 16 20 20 C 1.41420 * 118.21365 * 0.02562 * 18 17 16 21 21 C 1.40007 * 122.12338 * 180.02562 * 20 18 17 22 22 C 1.36340 * 119.50086 * 179.97438 * 21 20 18 23 23 C 1.39247 * 120.90381 * 0.02562 * 22 21 20 24 24 C 1.36284 * 121.04459 * 359.97438 * 23 22 21 25 25 C 1.40176 * 119.58493 * 359.97438 * 24 23 22 26 26 N 1.31155 * 118.52537 * 89.99518 * 16 15 2 27 27 H 1.08994 * 109.47412 * 183.96087 * 1 2 3 28 28 H 1.09008 * 109.47188 * 303.95824 * 1 2 3 29 29 H 1.08996 * 109.47005 * 63.95371 * 1 2 3 30 30 H 1.09002 * 109.47027 * 186.04884 * 3 2 1 31 31 H 1.09004 * 109.47035 * 306.04144 * 3 2 1 32 32 H 1.08998 * 109.47292 * 185.00066 * 4 3 2 33 33 H 1.08996 * 109.47301 * 305.00681 * 4 3 2 34 34 H 1.08993 * 109.47569 * 300.00183 * 6 5 4 35 35 H 1.09003 * 109.46426 * 60.00449 * 6 5 4 36 36 H 0.97001 * 119.99771 * 179.97438 * 10 9 7 37 37 H 1.09003 * 109.47673 * 173.95543 * 15 2 1 38 38 H 1.08999 * 109.47069 * 53.94887 * 15 2 1 39 39 H 0.96701 * 114.00717 * 269.98160 * 19 18 17 40 40 H 1.08003 * 120.25210 * 359.97059 * 21 20 18 41 41 H 1.07999 * 119.54939 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.47582 * 179.97438 * 23 22 21 43 43 H 1.08003 * 120.20870 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0576 1.3182 5 8 2.2956 1.3977 2.3979 6 6 2.0222 1.9638 3.6812 7 6 2.7694 1.1937 4.7393 8 1 3.3912 0.3560 4.4597 9 6 2.6593 1.5584 6.0644 10 7 1.9017 2.5781 6.4049 11 14 3.5860 0.6043 7.3760 12 1 4.3613 -0.4895 6.7374 13 1 4.5138 1.5178 8.0899 14 1 2.6192 0.0256 8.3432 15 6 1.9955 -0.7660 -1.1375 16 6 1.6370 -2.2205 -0.9727 17 7 2.4790 -3.0097 -0.3237 18 6 2.2233 -4.2963 -0.1442 19 8 3.0925 -5.0909 0.5213 20 6 1.0170 -4.8175 -0.6670 21 6 0.6645 -6.1649 -0.5241 22 6 -0.5124 -6.6102 -1.0491 23 6 -1.3672 -5.7436 -1.7253 24 6 -1.0534 -4.4267 -1.8816 25 6 0.1481 -3.9342 -1.3536 26 7 0.5048 -2.6477 -1.4785 27 1 -0.3634 -1.0251 0.0710 28 1 -0.3634 0.5741 0.8524 29 1 -0.3633 0.4512 -0.9233 30 1 3.0797 1.3444 -0.1083 31 1 1.5611 1.9273 -0.8310 32 1 1.9438 3.1013 1.2830 33 1 0.5532 2.0059 1.4691 34 1 2.3430 3.0053 3.6948 35 1 0.9520 1.9105 3.8812 36 1 1.8239 2.8345 7.3372 37 1 3.0798 -0.6611 -1.1755 38 1 1.5611 -0.3873 -2.0627 39 1 3.7553 -5.5098 -0.0447 40 1 1.3198 -6.8464 -0.0021 41 1 -0.7849 -7.6495 -0.9398 42 1 -2.2936 -6.1212 -2.1324 43 1 -1.7266 -3.7664 -2.4081 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815015384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:10 Heat of formation + Delta-G solvation = -2.350595 kcal Electronic energy + Delta-G solvation = -25739.497231 eV Core-core repulsion = 21978.935238 eV Total energy + Delta-G solvation = -3760.561993 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.68652 -38.47509 -38.25616 -37.29227 -35.80693 -33.42542 -32.63882 -31.80052 -30.94639 -29.22517 -27.77511 -26.80217 -24.96769 -24.69714 -22.59206 -22.47776 -22.16305 -20.57554 -19.12078 -18.80454 -18.03053 -16.52344 -16.31010 -16.06816 -15.66551 -15.39225 -15.32907 -14.80061 -14.62169 -14.43386 -14.30332 -14.01196 -13.75686 -13.04103 -12.85460 -12.78531 -12.50755 -12.37444 -12.07269 -11.91531 -11.75592 -11.66803 -11.50562 -11.06112 -10.95248 -10.77562 -10.70452 -10.62138 -10.31772 -9.90451 -9.54991 -9.41330 -8.96553 -8.70272 -8.60525 -8.09446 -8.01224 -6.01408 -4.01456 -0.09620 0.43388 1.52222 2.62254 3.03612 3.36222 3.42174 3.50709 3.56954 3.78482 4.05804 4.26479 4.31978 4.44905 4.47724 4.64319 4.82764 4.94414 4.97372 5.08957 5.30258 5.35180 5.35378 5.48189 5.55671 5.58511 5.64591 5.77411 5.79578 5.84000 5.97471 6.01116 6.04776 6.14229 6.24735 6.32902 6.39339 6.81550 7.09003 7.17438 7.19157 7.25837 7.54318 7.91893 7.97723 8.27821 8.73331 9.14448 9.63116 11.10455 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012956 B = 0.003095 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.645996 B = 9045.894229 C =10221.729976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.520 5.520 3 C 0.065 3.935 4 C 0.066 3.934 5 O -0.379 6.379 6 C 0.194 3.806 7 C -0.507 4.507 8 H 0.067 0.933 9 C 0.054 3.946 10 N -0.902 5.902 11 Si 0.906 3.094 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.121 3.879 16 C 0.368 3.632 17 N -0.519 5.519 18 C 0.407 3.593 19 O -0.466 6.466 20 C -0.181 4.181 21 C -0.065 4.065 22 C -0.129 4.129 23 C -0.078 4.078 24 C -0.104 4.104 25 C 0.174 3.826 26 N -0.509 5.509 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.025 0.975 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.002 0.998 35 H 0.002 0.998 36 H 0.262 0.738 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.409 0.591 40 H 0.138 0.862 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.619 -16.872 -21.871 28.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.245 5.245 3 C -0.063 4.063 4 C -0.012 4.012 5 O -0.298 6.298 6 C 0.120 3.880 7 C -0.545 4.545 8 H 0.086 0.914 9 C -0.147 4.147 10 N -0.541 5.541 11 Si 0.733 3.267 12 H -0.194 1.194 13 H -0.209 1.209 14 H -0.209 1.209 15 C -0.008 4.008 16 C 0.099 3.901 17 N -0.244 5.244 18 C 0.206 3.794 19 O -0.273 6.273 20 C -0.187 4.187 21 C -0.086 4.086 22 C -0.147 4.147 23 C -0.099 4.099 24 C -0.123 4.123 25 C 0.046 3.954 26 N -0.226 5.226 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.071 0.929 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.269 0.731 40 H 0.156 0.844 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.543 -16.028 -20.978 26.788 hybrid contribution -0.009 -0.851 0.103 0.857 sum -4.552 -16.879 -20.876 27.229 Atomic orbital electron populations 1.22457 0.87075 1.02324 1.00422 1.61737 1.08077 1.14163 1.40538 1.22167 1.01007 0.86959 0.96141 1.22268 0.96229 0.94575 0.88154 1.87974 1.69538 1.56809 1.15468 1.20169 0.95514 0.93472 0.78888 1.21127 1.27898 1.15086 0.90414 0.91440 1.24948 0.95781 0.95440 0.98491 1.69983 1.39299 1.27166 1.17699 0.86305 0.79495 0.79846 0.81032 1.19403 1.20912 1.20944 1.20843 1.01740 0.85017 0.93243 1.22759 0.84354 0.96246 0.86737 1.67735 1.36454 1.04581 1.15587 1.19639 0.87556 0.87033 0.85188 1.84682 1.45675 1.61426 1.35549 1.19635 0.98234 0.96942 1.03862 1.20899 0.97067 0.93447 0.97174 1.20987 0.94474 1.00494 0.98745 1.21063 0.99352 0.93058 0.96467 1.20742 0.95192 0.95889 1.00492 1.18915 0.94256 0.88490 0.93743 1.68666 1.16892 1.14157 1.22848 0.91796 0.90765 0.95603 0.89749 0.93976 0.94118 0.94524 0.97997 0.98039 0.92875 0.87916 0.92096 0.73068 0.84432 0.85052 0.84826 0.84111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.08 60.06 0.55 0.94 16 2 N -0.52 -8.68 4.70 -244.37 -1.15 -9.83 16 3 C 0.06 1.01 5.34 -3.82 -0.02 0.99 16 4 C 0.07 1.28 6.00 37.16 0.22 1.50 16 5 O -0.38 -9.73 10.27 -35.23 -0.36 -10.09 16 6 C 0.19 5.61 5.69 36.00 0.20 5.81 16 7 C -0.51 -15.73 9.43 -34.44 -0.32 -16.06 16 8 H 0.07 2.12 7.81 -52.48 -0.41 1.71 16 9 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -27.97 13.29 55.43 0.74 -27.24 16 11 Si 0.91 22.87 29.54 -169.99 -5.02 17.85 16 12 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 14 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 15 C 0.12 1.69 5.36 -4.98 -0.03 1.67 16 16 C 0.37 5.57 6.42 -157.21 -1.01 4.57 16 17 N -0.52 -8.25 10.30 -10.41 -0.11 -8.36 16 18 C 0.41 5.43 7.89 -16.10 -0.13 5.31 16 19 O -0.47 -5.00 12.94 -17.51 -0.23 -5.23 16 20 C -0.18 -2.16 5.75 -106.72 -0.61 -2.77 16 21 C -0.07 -0.57 9.61 -39.60 -0.38 -0.95 16 22 C -0.13 -0.91 9.96 -39.89 -0.40 -1.31 16 23 C -0.08 -0.56 9.95 -39.91 -0.40 -0.96 16 24 C -0.10 -1.00 10.01 -39.56 -0.40 -1.39 16 25 C 0.17 2.19 6.61 -84.85 -0.56 1.63 16 26 N -0.51 -7.22 9.20 -8.80 -0.08 -7.30 16 27 H 0.06 1.04 6.54 -51.93 -0.34 0.71 16 28 H 0.07 1.23 6.21 -51.92 -0.32 0.91 16 29 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 1.29 7.93 -51.93 -0.41 0.88 16 31 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.04 0.70 6.26 -51.93 -0.33 0.38 16 34 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 35 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.10 1.36 7.93 -51.93 -0.41 0.94 16 38 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 39 H 0.41 1.90 9.06 45.56 0.41 2.32 16 40 H 0.14 0.91 7.72 -52.48 -0.41 0.51 16 41 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.14 1.15 8.06 -52.48 -0.42 0.72 16 LS Contribution 364.88 15.07 5.50 5.50 Total: -1.00 -37.95 364.88 -9.24 -47.19 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -5.15 Total: -2.99 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -3.38 Total: 0.50 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.60 Total: -52.73 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.59 Total: -15.32 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.95 -9.24 -47.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815015384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.840 kcal (2) G-P(sol) polarization free energy of solvation -37.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds