Wall clock time and date at job start Tue Mar 31 2020 11:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 111.00072 * 2 1 4 4 C 1.53001 * 109.47549 * 66.04147 * 3 2 1 5 5 O 1.42909 * 109.46728 * 65.00185 * 4 3 2 6 6 C 1.42900 * 113.99762 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.46902 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00180 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99579 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00429 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46895 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47177 * 119.99625 * 11 9 7 14 14 H 1.48500 * 109.47260 * 240.00039 * 11 9 7 15 15 C 1.46893 * 111.00344 * 236.04400 * 2 1 3 16 16 C 1.50706 * 109.47032 * 293.95383 * 15 2 1 17 17 N 1.32407 * 118.52844 * 269.99774 * 16 15 2 18 18 C 1.32398 * 121.52346 * 179.97438 * 17 16 15 19 19 O 1.35273 * 120.89425 * 180.02562 * 18 17 16 20 20 C 1.41420 * 118.21365 * 0.02562 * 18 17 16 21 21 C 1.40007 * 122.12338 * 180.02562 * 20 18 17 22 22 C 1.36340 * 119.50086 * 179.97438 * 21 20 18 23 23 C 1.39247 * 120.90381 * 0.02562 * 22 21 20 24 24 C 1.36284 * 121.04459 * 359.97438 * 23 22 21 25 25 C 1.40176 * 119.58493 * 359.97438 * 24 23 22 26 26 N 1.31155 * 118.52537 * 89.99518 * 16 15 2 27 27 H 1.08994 * 109.47412 * 183.96087 * 1 2 3 28 28 H 1.09008 * 109.47188 * 303.95824 * 1 2 3 29 29 H 1.08996 * 109.47005 * 63.95371 * 1 2 3 30 30 H 1.09002 * 109.47027 * 186.04884 * 3 2 1 31 31 H 1.09004 * 109.47035 * 306.04144 * 3 2 1 32 32 H 1.08998 * 109.47292 * 185.00066 * 4 3 2 33 33 H 1.08996 * 109.47301 * 305.00681 * 4 3 2 34 34 H 1.08993 * 109.47569 * 300.00183 * 6 5 4 35 35 H 1.09003 * 109.46426 * 60.00449 * 6 5 4 36 36 H 0.97001 * 119.99771 * 179.97438 * 10 9 7 37 37 H 1.09003 * 109.47673 * 173.95543 * 15 2 1 38 38 H 1.08999 * 109.47069 * 53.94887 * 15 2 1 39 39 H 0.96701 * 114.00717 * 269.98160 * 19 18 17 40 40 H 1.08003 * 120.25210 * 359.97059 * 21 20 18 41 41 H 1.07999 * 119.54939 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.47582 * 179.97438 * 23 22 21 43 43 H 1.08003 * 120.20870 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0576 1.3182 5 8 2.2956 1.3977 2.3979 6 6 2.0222 1.9638 3.6812 7 6 2.7694 1.1937 4.7393 8 1 3.3912 0.3560 4.4597 9 6 2.6593 1.5584 6.0644 10 7 1.9017 2.5781 6.4049 11 14 3.5860 0.6043 7.3760 12 1 4.3613 -0.4895 6.7374 13 1 4.5138 1.5178 8.0899 14 1 2.6192 0.0256 8.3432 15 6 1.9955 -0.7660 -1.1375 16 6 1.6370 -2.2205 -0.9727 17 7 2.4790 -3.0097 -0.3237 18 6 2.2233 -4.2963 -0.1442 19 8 3.0925 -5.0909 0.5213 20 6 1.0170 -4.8175 -0.6670 21 6 0.6645 -6.1649 -0.5241 22 6 -0.5124 -6.6102 -1.0491 23 6 -1.3672 -5.7436 -1.7253 24 6 -1.0534 -4.4267 -1.8816 25 6 0.1481 -3.9342 -1.3536 26 7 0.5048 -2.6477 -1.4785 27 1 -0.3634 -1.0251 0.0710 28 1 -0.3634 0.5741 0.8524 29 1 -0.3633 0.4512 -0.9233 30 1 3.0797 1.3444 -0.1083 31 1 1.5611 1.9273 -0.8310 32 1 1.9438 3.1013 1.2830 33 1 0.5532 2.0059 1.4691 34 1 2.3430 3.0053 3.6948 35 1 0.9520 1.9105 3.8812 36 1 1.8239 2.8345 7.3372 37 1 3.0798 -0.6611 -1.1755 38 1 1.5611 -0.3873 -2.0627 39 1 3.7553 -5.5098 -0.0447 40 1 1.3198 -6.8464 -0.0021 41 1 -0.7849 -7.6495 -0.9398 42 1 -2.2936 -6.1212 -2.1324 43 1 -1.7266 -3.7664 -2.4081 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815015384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:09 Heat of formation + Delta-G solvation = -33.504600 kcal Electronic energy + Delta-G solvation = -25740.848170 eV Core-core repulsion = 21978.935238 eV Total energy + Delta-G solvation = -3761.912932 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.55172 -39.56466 -39.06488 -38.61261 -37.38257 -34.91177 -34.30987 -32.67855 -31.87830 -30.61311 -28.98487 -28.77506 -26.13918 -25.57708 -24.48722 -23.58723 -23.23895 -21.90570 -19.99965 -19.66279 -18.77169 -18.62503 -17.60245 -17.47075 -17.13861 -16.51416 -16.35155 -16.12843 -15.99330 -15.62560 -15.49172 -15.13241 -14.96390 -14.79224 -14.01845 -13.69216 -13.64768 -13.53738 -13.31851 -13.11107 -13.07835 -12.81679 -12.76148 -12.71514 -12.60128 -12.43089 -12.21324 -11.85644 -11.81248 -11.53205 -11.24089 -10.86151 -10.40667 -10.29342 -10.16936 -9.39912 -9.22037 -8.33128 -6.44668 -0.90986 -0.38650 0.74714 1.36935 1.39026 1.54346 1.82979 2.19414 2.34391 2.66979 2.91343 2.99957 3.14239 3.23967 3.29298 3.53860 3.75390 4.00929 4.07161 4.15224 4.21303 4.24962 4.30891 4.40129 4.47427 4.54752 4.56222 4.60956 4.70087 4.82245 4.83754 4.92198 4.93989 5.02123 5.17667 5.18682 5.22367 5.37427 5.54873 5.67895 5.93953 5.97038 6.01370 6.04733 6.44213 6.56911 6.87265 7.01744 7.27636 8.79583 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012956 B = 0.003095 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.645996 B = 9045.894229 C =10221.729976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.553 5.553 3 C 0.074 3.926 4 C 0.055 3.945 5 O -0.398 6.398 6 C 0.210 3.790 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.006 3.994 10 N -0.930 5.930 11 Si 0.982 3.018 12 H -0.268 1.268 13 H -0.266 1.266 14 H -0.270 1.270 15 C 0.127 3.873 16 C 0.345 3.655 17 N -0.561 5.561 18 C 0.398 3.602 19 O -0.473 6.473 20 C -0.193 4.193 21 C -0.075 4.075 22 C -0.115 4.115 23 C -0.062 4.062 24 C -0.121 4.121 25 C 0.143 3.857 26 N -0.517 5.517 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.037 0.963 34 H -0.013 1.013 35 H -0.021 1.021 36 H 0.271 0.729 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.431 0.569 40 H 0.157 0.843 41 H 0.170 0.830 42 H 0.172 0.828 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.294 -19.195 -22.489 30.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.279 5.279 3 C -0.053 4.053 4 C -0.022 4.022 5 O -0.317 6.317 6 C 0.135 3.865 7 C -0.583 4.583 8 H 0.073 0.927 9 C -0.192 4.192 10 N -0.570 5.570 11 Si 0.805 3.195 12 H -0.193 1.193 13 H -0.191 1.191 14 H -0.195 1.195 15 C -0.001 4.001 16 C 0.075 3.925 17 N -0.287 5.287 18 C 0.198 3.802 19 O -0.284 6.284 20 C -0.199 4.199 21 C -0.095 4.095 22 C -0.133 4.133 23 C -0.083 4.083 24 C -0.140 4.140 25 C 0.016 3.984 26 N -0.234 5.234 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.005 0.995 35 H -0.003 1.003 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.100 0.900 39 H 0.296 0.704 40 H 0.175 0.825 41 H 0.187 0.813 42 H 0.190 0.810 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.216 -18.364 -21.632 28.851 hybrid contribution 0.086 -0.267 0.209 0.350 sum -5.130 -18.631 -21.423 28.851 Atomic orbital electron populations 1.22295 0.86836 1.01298 1.00757 1.61616 1.08617 1.14855 1.42800 1.22102 1.01415 0.86996 0.94792 1.22660 0.95982 0.95593 0.87999 1.87928 1.70521 1.57757 1.15510 1.19768 0.93687 0.92515 0.80517 1.21400 1.29159 1.15712 0.92040 0.92674 1.25955 0.96321 0.96274 1.00672 1.70076 1.39861 1.28154 1.18897 0.85158 0.78340 0.78425 0.77617 1.19259 1.19094 1.19544 1.20822 1.01762 0.84564 0.92998 1.22844 0.85084 0.96603 0.87927 1.67682 1.37657 1.06029 1.17363 1.19894 0.88510 0.86773 0.85045 1.84625 1.46265 1.61142 1.36365 1.19829 0.97653 0.98417 1.03952 1.21208 0.98351 0.92255 0.97703 1.21498 0.93116 1.02235 0.96451 1.21559 1.00304 0.91846 0.94561 1.20989 0.94449 0.97383 1.01176 1.19419 0.95714 0.88320 0.94952 1.68625 1.16502 1.15302 1.22946 0.93179 0.92626 0.93115 0.89549 0.89951 0.92778 0.94484 0.99489 1.00332 0.92020 0.87858 0.90010 0.70446 0.82501 0.81268 0.81032 0.83247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.14 9.08 127.69 1.16 2.30 16 2 N -0.55 -18.74 4.70 -927.05 -4.36 -23.10 16 3 C 0.07 2.29 5.34 86.30 0.46 2.75 16 4 C 0.05 2.18 6.00 71.98 0.43 2.61 16 5 O -0.40 -21.23 10.27 -148.98 -1.53 -22.76 16 6 C 0.21 12.69 5.69 71.23 0.41 13.09 16 7 C -0.55 -34.90 9.43 25.60 0.24 -34.65 16 8 H 0.05 3.57 7.81 -2.91 -0.02 3.55 16 9 C 0.01 0.36 5.46 84.65 0.46 0.83 16 10 N -0.93 -58.28 13.29 21.45 0.28 -58.00 16 11 Si 0.98 47.02 29.54 68.60 2.03 49.05 16 12 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 14 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 15 C 0.13 3.63 5.36 85.56 0.46 4.09 16 16 C 0.34 10.86 6.42 138.76 0.89 11.76 16 17 N -0.56 -18.74 10.30 -299.85 -3.09 -21.83 16 18 C 0.40 10.96 7.89 85.39 0.67 11.64 16 19 O -0.47 -10.26 12.94 -85.58 -1.11 -11.36 16 20 C -0.19 -4.57 5.75 -21.22 -0.12 -4.70 16 21 C -0.07 -1.16 9.61 22.26 0.21 -0.94 16 22 C -0.12 -1.19 9.96 22.07 0.22 -0.97 16 23 C -0.06 -0.67 9.95 22.06 0.22 -0.45 16 24 C -0.12 -2.14 10.01 22.28 0.22 -1.92 16 25 C 0.14 3.61 6.61 40.11 0.27 3.88 16 26 N -0.52 -15.06 9.20 -181.75 -1.67 -16.73 16 27 H 0.05 1.70 6.54 -2.39 -0.02 1.68 16 28 H 0.05 1.91 6.21 -2.38 -0.01 1.90 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 2.63 7.93 -2.39 -0.02 2.61 16 31 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.04 1.46 6.26 -2.39 -0.01 1.45 16 34 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 35 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 36 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 37 H 0.10 2.82 7.93 -2.39 -0.02 2.80 16 38 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 39 H 0.43 3.98 9.06 -74.06 -0.67 3.31 16 40 H 0.16 1.71 7.72 -2.91 -0.02 1.68 16 41 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 42 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 43 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -85.51 364.88 -2.88 -88.38 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 0.36 Total: 7.06 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 6.20 Total: 9.30 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -8.83 Total: -119.67 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -2.64 Total: -34.13 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -85.51 -2.88 -88.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815015384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.880 kcal (2) G-P(sol) polarization free energy of solvation -85.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds