Wall clock time and date at job start Tue Mar 31 2020 11:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99470 * 2 1 4 4 N 1.46504 * 109.47158 * 125.00156 * 3 2 1 5 5 C 1.46503 * 119.99761 * 278.67219 * 4 3 2 6 6 C 1.50696 * 109.47118 * 270.00112 * 5 4 3 7 7 H 1.07998 * 120.00356 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00084 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00518 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99796 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47519 * 90.00396 * 10 8 6 12 12 H 1.48506 * 109.47170 * 210.00379 * 10 8 6 13 13 H 1.48497 * 109.47185 * 330.00169 * 10 8 6 14 14 C 1.34769 * 120.00328 * 98.67168 * 4 3 2 15 15 O 1.21584 * 120.00287 * 186.83099 * 14 4 3 16 16 C 1.47591 * 120.00072 * 6.83160 * 14 4 3 17 17 C 1.39747 * 120.07427 * 149.35358 * 16 14 4 18 18 C 1.37660 * 119.92632 * 180.30042 * 17 16 14 19 19 C 1.39138 * 120.07109 * 359.47656 * 18 17 16 20 20 N 1.39435 * 119.92342 * 180.23766 * 19 18 17 21 21 C 1.34770 * 120.00146 * 28.54493 * 20 19 18 22 22 O 1.21571 * 120.00580 * 5.33121 * 21 20 19 23 23 N 1.34785 * 119.99809 * 185.32649 * 21 20 19 24 24 C 1.46500 * 119.99959 * 180.02562 * 23 21 20 25 25 C 1.39135 * 120.14810 * 0.50154 * 19 18 17 26 26 C 1.37659 * 120.07529 * 359.77428 * 25 19 18 27 27 H 1.08006 * 119.99337 * 180.02562 * 1 2 3 28 28 H 1.07990 * 120.00529 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.00169 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47558 * 4.99968 * 3 2 1 31 31 H 1.08999 * 109.47337 * 244.99881 * 3 2 1 32 32 H 1.09000 * 109.46943 * 30.00264 * 5 4 3 33 33 H 1.09000 * 109.47120 * 149.99910 * 5 4 3 34 34 H 0.96995 * 120.00396 * 179.97438 * 9 8 6 35 35 H 1.08006 * 120.04052 * 0.02682 * 17 16 14 36 36 H 1.07998 * 119.96643 * 179.70141 * 18 17 16 37 37 H 0.97001 * 119.99360 * 208.55107 * 20 19 18 38 38 H 0.96996 * 119.99608 * 0.02562 * 23 21 20 39 39 H 1.09000 * 109.46821 * 300.00186 * 24 23 21 40 40 H 1.08994 * 109.47353 * 59.99988 * 24 23 21 41 41 H 1.08996 * 109.46740 * 180.02562 * 24 23 21 42 42 H 1.07999 * 119.95963 * 179.75195 * 25 19 18 43 43 H 1.08003 * 120.03925 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 2.5105 1.6846 2.4688 6 6 2.6223 3.1743 2.6667 7 1 3.0144 3.7963 1.8757 8 6 2.2249 3.7433 3.8581 9 7 2.3219 5.0434 4.0307 10 14 1.5473 2.6674 5.2266 11 1 2.6609 2.2170 6.0997 12 1 0.5714 3.4458 6.0311 13 1 0.8708 1.4842 4.6372 14 6 4.2940 1.0325 0.9421 15 8 5.0402 0.9330 1.8967 16 6 4.8121 0.8251 -0.4243 17 6 6.1386 1.1447 -0.7262 18 6 6.6169 0.9558 -2.0032 19 6 5.7843 0.4372 -2.9900 20 7 6.2734 0.2426 -4.2811 21 6 7.5831 -0.0096 -4.4747 22 8 8.3201 -0.1636 -3.5203 23 7 8.0758 -0.0912 -5.7266 24 6 9.4993 -0.3658 -5.9371 25 6 4.4632 0.1175 -2.6926 26 6 3.9769 0.3092 -1.4191 27 1 -0.5399 -0.9354 0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3584 2.1317 0.0896 31 1 2.6212 1.4028 -0.9313 32 1 1.4684 1.3818 2.5701 33 1 3.1124 1.1722 3.2193 34 1 2.0419 5.4436 4.8687 35 1 6.7866 1.5435 0.0402 36 1 7.6405 1.2071 -2.2385 37 1 5.6710 0.2887 -5.0400 38 1 7.4878 0.0320 -6.4881 39 1 10.0937 0.4199 -5.4708 40 1 9.7538 -1.3271 -5.4909 41 1 9.7096 -0.3941 -7.0062 42 1 3.8185 -0.2811 -3.4619 43 1 2.9512 0.0612 -1.1890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820224842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:07 Heat of formation + Delta-G solvation = 28.955160 kcal Electronic energy + Delta-G solvation = -25956.406227 eV Core-core repulsion = 22197.201753 eV Total energy + Delta-G solvation = -3759.204474 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.97631 -39.85202 -37.95799 -36.00202 -35.07610 -34.88625 -33.19147 -32.13289 -30.98858 -30.21418 -28.05993 -26.85245 -25.83488 -23.53278 -23.02797 -21.77845 -21.14465 -20.17854 -19.03696 -18.83590 -17.95184 -16.90187 -16.83362 -16.13399 -15.85839 -15.46178 -15.07067 -14.87872 -14.58840 -14.26006 -14.16599 -13.81814 -13.64547 -13.49521 -13.03905 -12.91938 -12.67088 -12.59197 -12.38283 -12.07740 -11.67029 -11.53890 -11.24153 -10.98374 -10.75088 -10.62108 -10.49482 -10.25314 -10.10407 -9.59602 -9.54437 -9.32709 -9.07335 -8.78909 -8.56136 -8.05210 -7.70127 -6.06156 -4.04904 1.05787 1.46764 2.24301 2.31771 2.74948 3.32147 3.38104 3.39505 3.40643 3.76861 3.83443 4.16549 4.42617 4.74164 4.86605 4.97976 4.98821 5.13033 5.17057 5.27335 5.31899 5.36143 5.41225 5.47469 5.54990 5.60864 5.92854 5.94242 6.04691 6.10991 6.17139 6.21072 6.45121 6.55849 6.59921 6.69462 6.77859 6.83761 6.98940 7.03317 7.37514 7.50410 7.63802 8.14186 8.24864 8.49468 8.93860 8.99895 9.54232 11.07111 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021544 B = 0.002939 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.362865 B = 9525.294976 C =10313.819052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.179 4.179 3 C 0.105 3.895 4 N -0.581 5.581 5 C 0.216 3.784 6 C -0.529 4.529 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.552 3.448 15 O -0.537 6.537 16 C -0.136 4.136 17 C -0.042 4.042 18 C -0.135 4.135 19 C 0.176 3.824 20 N -0.682 5.682 21 C 0.699 3.301 22 O -0.565 6.565 23 N -0.747 5.747 24 C 0.105 3.895 25 C -0.161 4.161 26 C -0.097 4.097 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.031 0.969 33 H 0.039 0.961 34 H 0.264 0.736 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.407 0.593 38 H 0.399 0.601 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.128 0.872 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.801 -11.826 -24.433 27.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.198 4.198 3 C -0.018 4.018 4 N -0.310 5.310 5 C 0.096 3.904 6 C -0.568 4.568 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.536 5.536 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.340 3.660 15 O -0.415 6.415 16 C -0.141 4.141 17 C -0.061 4.061 18 C -0.155 4.155 19 C 0.080 3.920 20 N -0.328 5.328 21 C 0.400 3.600 22 O -0.440 6.440 23 N -0.403 5.403 24 C -0.039 4.039 25 C -0.182 4.182 26 C -0.116 4.116 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.104 0.896 31 H 0.124 0.876 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.154 0.846 36 H 0.162 0.838 37 H 0.242 0.758 38 H 0.232 0.768 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.145 0.855 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.923 -11.853 -22.938 26.285 hybrid contribution -1.006 -0.325 -0.050 1.059 sum 3.917 -12.178 -22.988 26.308 Atomic orbital electron populations 1.23880 0.95757 1.01984 0.99437 1.23396 0.96472 0.99085 1.00848 1.21423 0.93627 0.95272 0.91462 1.47741 1.06768 1.66211 1.10330 1.19677 0.94584 0.96926 0.79223 1.21338 1.43079 0.90453 1.01912 0.90666 1.24839 0.95198 0.94884 0.98007 1.69893 1.47866 1.10009 1.25817 0.86866 0.79401 0.80840 0.82718 1.19863 1.21091 1.18991 1.18132 0.82316 0.77518 0.88026 1.90749 1.56631 1.51553 1.42531 1.20162 0.95028 1.04346 0.94520 1.21156 0.93773 0.95188 0.96028 1.21199 1.01120 1.00721 0.92446 1.17647 0.93322 0.97140 0.83845 1.42481 1.08284 1.74102 1.07939 1.15968 0.81993 0.78104 0.83971 1.90973 1.57650 1.55618 1.39804 1.44933 1.11474 1.77780 1.06086 1.21453 0.79282 1.01799 1.01394 1.20688 0.94432 1.05297 0.97750 1.22106 1.00691 0.96920 0.91834 0.88568 0.88042 0.87250 0.89572 0.87581 0.95063 0.94321 0.92573 0.84593 0.83814 0.75822 0.76814 0.92031 0.92103 0.90444 0.85453 0.82219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 14.32 29.01 0.42 -1.65 16 2 C -0.18 -2.41 8.25 -36.03 -0.30 -2.71 16 3 C 0.11 1.70 5.33 -5.19 -0.03 1.67 16 4 N -0.58 -12.41 2.45 -177.64 -0.44 -12.84 16 5 C 0.22 5.43 4.28 -5.19 -0.02 5.40 16 6 C -0.53 -15.41 9.94 -34.44 -0.34 -15.75 16 7 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 8 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 9 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 10 Si 0.87 21.92 27.47 -169.99 -4.67 17.25 16 11 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 14 C 0.55 12.14 7.44 -12.45 -0.09 12.05 16 15 O -0.54 -13.97 16.27 5.29 0.09 -13.88 16 16 C -0.14 -2.40 5.58 -104.95 -0.59 -2.98 16 17 C -0.04 -0.71 9.58 -39.23 -0.38 -1.09 16 18 C -0.13 -2.00 8.65 -39.46 -0.34 -2.34 16 19 C 0.18 2.15 6.37 -83.73 -0.53 1.62 16 20 N -0.68 -6.06 5.34 -14.22 -0.08 -6.13 16 21 C 0.70 7.34 8.33 -86.92 -0.72 6.61 16 22 O -0.56 -8.50 13.69 5.30 0.07 -8.43 16 23 N -0.75 -4.64 5.72 -72.08 -0.41 -5.06 16 24 C 0.11 0.56 10.70 59.85 0.64 1.21 16 25 C -0.16 -1.79 9.93 -39.46 -0.39 -2.18 16 26 C -0.10 -1.32 7.46 -39.22 -0.29 -1.61 16 27 H 0.10 0.97 8.06 -52.48 -0.42 0.54 16 28 H 0.10 1.20 7.84 -52.49 -0.41 0.79 16 29 H 0.11 1.39 7.60 -52.49 -0.40 0.99 16 30 H 0.09 1.45 7.78 -51.93 -0.40 1.05 16 31 H 0.11 1.50 4.02 -52.04 -0.21 1.29 16 32 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 33 H 0.04 1.04 6.77 -51.93 -0.35 0.69 16 34 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 35 H 0.14 2.39 7.93 -52.48 -0.42 1.97 16 36 H 0.14 2.21 6.03 -52.49 -0.32 1.89 16 37 H 0.41 1.96 8.81 -40.82 -0.36 1.60 16 38 H 0.40 1.07 8.85 -40.82 -0.36 0.71 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.16 1.96 2.95 -52.48 -0.15 1.81 16 LS Contribution 359.89 15.07 5.42 5.42 Total: -1.00 -38.48 359.89 -7.76 -46.24 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.46 Total: 4.26 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -3.07 Total: 0.30 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.15 Total: -51.17 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: 0.16 Total: -22.31 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -38.48 -7.76 -46.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820224842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.199 kcal (2) G-P(sol) polarization free energy of solvation -38.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds