Wall clock time and date at job start Tue Mar 31 2020 11:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99470 * 2 1 4 4 N 1.46504 * 109.47158 * 125.00156 * 3 2 1 5 5 C 1.46503 * 119.99761 * 278.67219 * 4 3 2 6 6 C 1.50696 * 109.47118 * 270.00112 * 5 4 3 7 7 H 1.07998 * 120.00356 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00084 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00518 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99796 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47519 * 90.00396 * 10 8 6 12 12 H 1.48506 * 109.47170 * 210.00379 * 10 8 6 13 13 H 1.48497 * 109.47185 * 330.00169 * 10 8 6 14 14 C 1.34769 * 120.00328 * 98.67168 * 4 3 2 15 15 O 1.21584 * 120.00287 * 186.83099 * 14 4 3 16 16 C 1.47591 * 120.00072 * 6.83160 * 14 4 3 17 17 C 1.39747 * 120.07427 * 149.35358 * 16 14 4 18 18 C 1.37660 * 119.92632 * 180.30042 * 17 16 14 19 19 C 1.39138 * 120.07109 * 359.47656 * 18 17 16 20 20 N 1.39435 * 119.92342 * 180.23766 * 19 18 17 21 21 C 1.34770 * 120.00146 * 28.54493 * 20 19 18 22 22 O 1.21571 * 120.00580 * 5.33121 * 21 20 19 23 23 N 1.34785 * 119.99809 * 185.32649 * 21 20 19 24 24 C 1.46500 * 119.99959 * 180.02562 * 23 21 20 25 25 C 1.39135 * 120.14810 * 0.50154 * 19 18 17 26 26 C 1.37659 * 120.07529 * 359.77428 * 25 19 18 27 27 H 1.08006 * 119.99337 * 180.02562 * 1 2 3 28 28 H 1.07990 * 120.00529 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.00169 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47558 * 4.99968 * 3 2 1 31 31 H 1.08999 * 109.47337 * 244.99881 * 3 2 1 32 32 H 1.09000 * 109.46943 * 30.00264 * 5 4 3 33 33 H 1.09000 * 109.47120 * 149.99910 * 5 4 3 34 34 H 0.96995 * 120.00396 * 179.97438 * 9 8 6 35 35 H 1.08006 * 120.04052 * 0.02682 * 17 16 14 36 36 H 1.07998 * 119.96643 * 179.70141 * 18 17 16 37 37 H 0.97001 * 119.99360 * 208.55107 * 20 19 18 38 38 H 0.96996 * 119.99608 * 0.02562 * 23 21 20 39 39 H 1.09000 * 109.46821 * 300.00186 * 24 23 21 40 40 H 1.08994 * 109.47353 * 59.99988 * 24 23 21 41 41 H 1.08996 * 109.46740 * 180.02562 * 24 23 21 42 42 H 1.07999 * 119.95963 * 179.75195 * 25 19 18 43 43 H 1.08003 * 120.03925 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 2.5105 1.6846 2.4688 6 6 2.6223 3.1743 2.6667 7 1 3.0144 3.7963 1.8757 8 6 2.2249 3.7433 3.8581 9 7 2.3219 5.0434 4.0307 10 14 1.5473 2.6674 5.2266 11 1 2.6609 2.2170 6.0997 12 1 0.5714 3.4458 6.0311 13 1 0.8708 1.4842 4.6372 14 6 4.2940 1.0325 0.9421 15 8 5.0402 0.9330 1.8967 16 6 4.8121 0.8251 -0.4243 17 6 6.1386 1.1447 -0.7262 18 6 6.6169 0.9558 -2.0032 19 6 5.7843 0.4372 -2.9900 20 7 6.2734 0.2426 -4.2811 21 6 7.5831 -0.0096 -4.4747 22 8 8.3201 -0.1636 -3.5203 23 7 8.0758 -0.0912 -5.7266 24 6 9.4993 -0.3658 -5.9371 25 6 4.4632 0.1175 -2.6926 26 6 3.9769 0.3092 -1.4191 27 1 -0.5399 -0.9354 0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3584 2.1317 0.0896 31 1 2.6212 1.4028 -0.9313 32 1 1.4684 1.3818 2.5701 33 1 3.1124 1.1722 3.2193 34 1 2.0419 5.4436 4.8687 35 1 6.7866 1.5435 0.0402 36 1 7.6405 1.2071 -2.2385 37 1 5.6710 0.2887 -5.0400 38 1 7.4878 0.0320 -6.4881 39 1 10.0937 0.4199 -5.4708 40 1 9.7538 -1.3271 -5.4909 41 1 9.7096 -0.3941 -7.0062 42 1 3.8185 -0.2811 -3.4619 43 1 2.9512 0.0612 -1.1890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820224842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:06 Heat of formation + Delta-G solvation = -0.502451 kcal Electronic energy + Delta-G solvation = -25957.683605 eV Core-core repulsion = 22197.201753 eV Total energy + Delta-G solvation = -3760.481851 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.96547 -41.18398 -39.19928 -37.53572 -36.00077 -35.73571 -35.04860 -33.80645 -32.18591 -31.48533 -29.75617 -27.63609 -27.14596 -25.12994 -24.13588 -23.29685 -22.02159 -21.38967 -20.28939 -19.78091 -19.10159 -18.90044 -18.29530 -17.49822 -16.80814 -16.47408 -16.42191 -16.05711 -15.98239 -15.71729 -15.27285 -15.04498 -14.96915 -14.51585 -14.39201 -14.31957 -14.11361 -13.65171 -13.61056 -13.35755 -13.05793 -13.03665 -12.82393 -12.51506 -12.30433 -12.04563 -11.86939 -11.75908 -11.64216 -11.27590 -10.84978 -10.78382 -10.40643 -10.22820 -9.90074 -9.52341 -9.05624 -8.35408 -6.40874 -0.14692 0.35660 1.27845 1.32478 1.36118 1.44558 1.50615 1.72521 2.04601 2.29924 2.35505 2.85874 2.98705 3.17951 3.61956 3.83499 3.94099 4.05434 4.20894 4.29783 4.36669 4.41221 4.47209 4.50246 4.65896 4.74505 4.84621 4.90342 4.95633 5.00113 5.08694 5.11546 5.16424 5.31762 5.35946 5.43260 5.46070 5.52179 5.71714 5.89076 5.91308 5.93744 6.22448 6.59658 6.61089 6.93415 7.17412 7.32395 7.40580 8.81496 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021544 B = 0.002939 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.362865 B = 9525.294976 C =10313.819052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.197 4.197 3 C 0.100 3.900 4 N -0.586 5.586 5 C 0.227 3.773 6 C -0.538 4.538 7 H 0.029 0.971 8 C 0.013 3.987 9 N -0.943 5.943 10 Si 0.946 3.054 11 H -0.278 1.278 12 H -0.271 1.271 13 H -0.237 1.237 14 C 0.543 3.457 15 O -0.596 6.596 16 C -0.164 4.164 17 C -0.061 4.061 18 C -0.145 4.145 19 C 0.191 3.809 20 N -0.664 5.664 21 C 0.691 3.309 22 O -0.616 6.616 23 N -0.726 5.726 24 C 0.101 3.899 25 C -0.138 4.138 26 C -0.086 4.086 27 H 0.124 0.876 28 H 0.101 0.899 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.128 0.872 32 H 0.052 0.948 33 H 0.018 0.982 34 H 0.269 0.731 35 H 0.108 0.892 36 H 0.134 0.866 37 H 0.431 0.569 38 H 0.420 0.580 39 H 0.046 0.954 40 H 0.048 0.952 41 H 0.118 0.882 42 H 0.183 0.817 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.281 -14.481 -27.828 31.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.215 4.215 3 C -0.021 4.021 4 N -0.314 5.314 5 C 0.105 3.895 6 C -0.577 4.577 7 H 0.047 0.953 8 C -0.185 4.185 9 N -0.583 5.583 10 Si 0.769 3.231 11 H -0.204 1.204 12 H -0.196 1.196 13 H -0.160 1.160 14 C 0.333 3.667 15 O -0.479 6.479 16 C -0.169 4.169 17 C -0.081 4.081 18 C -0.165 4.165 19 C 0.093 3.907 20 N -0.312 5.312 21 C 0.391 3.609 22 O -0.495 6.495 23 N -0.382 5.382 24 C -0.044 4.044 25 C -0.158 4.158 26 C -0.104 4.104 27 H 0.142 0.858 28 H 0.119 0.881 29 H 0.140 0.860 30 H 0.093 0.907 31 H 0.145 0.855 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.151 0.849 37 H 0.271 0.729 38 H 0.257 0.743 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.137 0.863 42 H 0.200 0.800 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.346 -14.513 -26.479 30.286 hybrid contribution -0.146 0.562 0.793 0.983 sum 2.200 -13.951 -25.686 29.312 Atomic orbital electron populations 1.24140 0.95160 1.03323 0.96130 1.23192 0.96900 0.97700 1.03745 1.21733 0.92974 0.96954 0.90411 1.47813 1.07641 1.65543 1.10427 1.19318 0.95194 0.93756 0.81243 1.21536 1.42741 0.92366 1.01042 0.95300 1.25827 0.95466 0.96347 1.00859 1.70040 1.49192 1.12159 1.26932 0.85736 0.78809 0.79713 0.78851 1.20373 1.19611 1.16048 1.18901 0.82023 0.76337 0.89412 1.90689 1.58026 1.54396 1.44779 1.19866 0.95808 1.08014 0.93169 1.20991 0.93718 0.96733 0.96643 1.21102 1.01234 1.01822 0.92384 1.17733 0.93450 0.94958 0.84524 1.42276 1.08347 1.73140 1.07443 1.16276 0.82033 0.77908 0.84639 1.90960 1.58934 1.57806 1.41816 1.44818 1.12165 1.75984 1.05263 1.21609 0.78421 1.00537 1.03784 1.21130 0.94119 1.02929 0.97643 1.22270 1.00816 0.95544 0.91775 0.85794 0.88073 0.86048 0.90681 0.85519 0.92971 0.96439 0.92173 0.87359 0.84873 0.72873 0.74290 0.93516 0.93331 0.86345 0.80019 0.80354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 14.32 67.78 0.97 -2.02 16 2 C -0.20 -4.72 8.25 25.65 0.21 -4.50 16 3 C 0.10 3.16 5.33 85.63 0.46 3.61 16 4 N -0.59 -25.71 2.45 -834.21 -2.04 -27.76 16 5 C 0.23 11.65 4.28 85.63 0.37 12.02 16 6 C -0.54 -32.82 9.94 25.60 0.25 -32.57 16 7 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 8 C 0.01 0.80 5.47 84.66 0.46 1.26 16 9 N -0.94 -60.80 13.96 21.45 0.30 -60.50 16 10 Si 0.95 45.67 27.47 68.60 1.88 47.55 16 11 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 13 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 14 C 0.54 25.23 7.44 86.71 0.65 25.88 16 15 O -0.60 -33.55 16.27 -3.98 -0.06 -33.62 16 16 C -0.16 -5.97 5.58 -20.08 -0.11 -6.08 16 17 C -0.06 -2.23 9.58 22.50 0.22 -2.01 16 18 C -0.14 -4.42 8.65 22.35 0.19 -4.23 16 19 C 0.19 4.21 6.37 38.36 0.24 4.46 16 20 N -0.66 -9.56 5.34 -317.18 -1.69 -11.26 16 21 C 0.69 13.16 8.33 179.05 1.49 14.65 16 22 O -0.62 -18.54 13.69 -3.94 -0.05 -18.59 16 23 N -0.73 -6.94 5.72 -500.21 -2.86 -9.80 16 24 C 0.10 0.87 10.70 127.77 1.37 2.24 16 25 C -0.14 -2.50 9.93 22.35 0.22 -2.27 16 26 C -0.09 -2.15 7.46 22.50 0.17 -1.98 16 27 H 0.12 1.85 8.06 -2.91 -0.02 1.82 16 28 H 0.10 2.04 7.84 -2.92 -0.02 2.02 16 29 H 0.12 2.67 7.60 -2.91 -0.02 2.65 16 30 H 0.07 2.50 7.78 -2.39 -0.02 2.48 16 31 H 0.13 3.38 4.02 -2.49 -0.01 3.37 16 32 H 0.05 2.45 7.13 -2.39 -0.02 2.43 16 33 H 0.02 0.97 6.77 -2.39 -0.02 0.96 16 34 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 35 H 0.11 4.38 7.93 -2.91 -0.02 4.36 16 36 H 0.13 4.35 6.03 -2.91 -0.02 4.33 16 37 H 0.43 1.96 8.81 -92.71 -0.82 1.14 16 38 H 0.42 0.49 8.85 -92.71 -0.82 -0.33 16 39 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.18 1.43 8.06 -2.91 -0.02 1.40 16 43 H 0.18 3.81 2.95 -2.91 -0.01 3.81 16 Total: -1.00 -92.91 359.89 2.00 -90.91 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -0.63 Total: 14.61 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 7.16 Total: 8.44 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -6.30 Total: -109.31 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -0.12 Total: -52.21 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.88 Total: 47.55 kcal Total: -92.91 2.00 -90.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820224842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.411 kcal (2) G-P(sol) polarization free energy of solvation -92.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds