Wall clock time and date at job start Tue Mar 31 2020 11:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 117.00093 * 2 1 4 4 C 1.38754 * 120.05516 * 359.72833 * 3 2 1 5 5 C 1.38125 * 119.93889 * 179.70405 * 4 3 2 6 6 C 1.38289 * 120.05977 * 0.58874 * 5 4 3 7 7 C 1.38241 * 120.10753 * 359.68484 * 6 5 4 8 8 C 1.38169 * 120.05726 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.02655 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47342 * 265.02045 * 9 8 7 11 11 N 1.29949 * 126.28851 * 90.02060 * 10 9 8 12 12 O 1.21296 * 110.25281 * 179.97438 * 11 10 9 13 13 C 1.33648 * 109.81372 * 0.02562 * 12 11 10 14 14 C 1.50697 * 126.55329 * 179.97438 * 13 12 11 15 15 H 1.08999 * 109.47237 * 195.02970 * 14 13 12 16 16 N 1.46907 * 109.46940 * 315.02539 * 14 13 12 17 17 C 1.52996 * 109.47002 * 75.02343 * 14 13 12 18 18 C 1.52999 * 109.46805 * 174.99792 * 17 14 13 19 19 C 1.50704 * 109.47156 * 180.02562 * 18 17 14 20 20 H 1.08004 * 119.99961 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00365 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99679 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00231 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47540 * 59.99462 * 23 21 19 25 25 H 1.48497 * 109.47395 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46880 * 299.99810 * 23 21 19 27 27 N 1.31125 * 106.89069 * 359.76883 * 13 12 11 28 28 H 1.09001 * 109.47103 * 300.00408 * 1 2 3 29 29 H 1.09004 * 109.47054 * 59.99912 * 1 2 3 30 30 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.03298 * 359.97012 * 4 3 2 32 32 H 1.08008 * 119.96721 * 180.29817 * 5 4 3 33 33 H 1.07994 * 119.94595 * 179.70675 * 6 5 4 34 34 H 1.08004 * 119.96948 * 179.97438 * 7 6 5 35 35 H 1.09008 * 109.47325 * 25.02170 * 9 8 7 36 36 H 1.08998 * 109.47382 * 145.02294 * 9 8 7 37 37 H 1.00899 * 111.00092 * 296.04384 * 16 14 13 38 38 H 1.00897 * 110.99710 * 60.00221 * 16 14 13 39 39 H 1.08997 * 109.47579 * 294.99879 * 17 14 13 40 40 H 1.09006 * 109.47113 * 55.00514 * 17 14 13 41 41 H 1.08996 * 109.47645 * 300.00387 * 18 17 14 42 42 H 1.09003 * 109.47361 * 60.00771 * 18 17 14 43 43 H 0.96999 * 119.99466 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0057 5 6 1.9210 3.6047 0.0005 6 6 3.3021 3.6757 0.0001 7 6 4.0561 2.5170 0.0000 8 6 3.4311 1.2847 -0.0001 9 6 4.2537 0.0221 -0.0008 10 6 4.4241 -0.4658 -1.4164 11 7 5.3856 -0.1454 -2.2298 12 8 5.2380 -0.7053 -3.2956 13 6 4.1345 -1.4585 -3.2626 14 6 3.5966 -2.3121 -4.3821 15 1 2.5659 -2.5910 -4.1633 16 7 3.6425 -1.5552 -5.6404 17 6 4.4496 -3.5752 -4.5153 18 6 3.8315 -4.4994 -5.5663 19 6 4.6713 -5.7439 -5.6972 20 1 5.5576 -5.8634 -5.0916 21 6 4.3089 -6.7294 -6.5907 22 7 3.2300 -6.5837 -7.3284 23 14 5.3494 -8.2723 -6.7523 24 1 5.4002 -8.9745 -5.4448 25 1 4.7496 -9.1694 -7.7724 26 1 6.7257 -7.8998 -7.1678 27 7 3.6117 -1.3163 -2.0686 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2129 2.3204 -0.0106 32 1 1.3341 4.5114 0.0009 33 1 3.7924 4.6379 0.0001 34 1 5.1345 2.5751 -0.0007 35 1 5.2325 0.2258 0.4337 36 1 3.7467 -0.7422 0.5883 37 1 3.0359 -0.7499 -5.6003 38 1 4.5882 -1.2848 -5.8653 39 1 5.4593 -3.3012 -4.8212 40 1 4.4879 -4.0907 -3.5556 41 1 2.8218 -4.7734 -5.2605 42 1 3.7932 -3.9840 -6.5260 43 1 2.9748 -7.2772 -7.9568 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822643562.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:30 Heat of formation + Delta-G solvation = 44.454991 kcal Electronic energy + Delta-G solvation = -25758.218416 eV Core-core repulsion = 21999.686065 eV Total energy + Delta-G solvation = -3758.532350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.38779 -40.49995 -37.70124 -36.65993 -35.95909 -33.45913 -32.91092 -31.31791 -30.41667 -30.24400 -28.10013 -27.24709 -26.47838 -24.10240 -23.45090 -22.39722 -22.05731 -20.95491 -19.91359 -18.29815 -17.82894 -17.32108 -16.53564 -16.21937 -16.00884 -15.94285 -15.86577 -15.14125 -14.77564 -14.40807 -14.26264 -14.03895 -13.96560 -13.68392 -12.79741 -12.69656 -12.42522 -12.35223 -12.28618 -12.04330 -11.73715 -11.69408 -11.45657 -11.35960 -11.05610 -10.87161 -10.84238 -10.66304 -10.56285 -9.94500 -9.79439 -9.33668 -9.22316 -9.01717 -8.78581 -8.43525 -8.26257 -5.93557 -3.95584 0.93411 1.14602 1.32899 2.39883 3.01322 3.06017 3.37351 3.37457 3.41740 3.44394 3.84599 4.14809 4.40560 4.50089 4.52091 4.71407 4.75485 4.82245 4.93330 4.95059 5.04716 5.14227 5.26563 5.30215 5.34131 5.42218 5.48111 5.51404 5.67481 5.79038 5.93037 6.00554 6.09259 6.16873 6.22088 6.44443 6.47464 6.60733 7.03687 7.13995 7.20306 7.54615 7.76308 7.94399 8.11090 8.33997 8.47709 9.11562 9.67508 11.17407 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022688 B = 0.002555 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.850773 B =10956.653014 C =11364.617189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.299 6.299 3 C 0.146 3.854 4 C -0.213 4.213 5 C -0.077 4.077 6 C -0.161 4.161 7 C -0.068 4.068 8 C -0.122 4.122 9 C 0.023 3.977 10 C 0.175 3.825 11 N -0.392 5.392 12 O 0.070 5.930 13 C 0.155 3.845 14 C 0.187 3.813 15 H 0.123 0.877 16 N -0.813 5.813 17 C -0.101 4.101 18 C 0.032 3.968 19 C -0.523 4.523 20 H 0.052 0.948 21 C 0.058 3.942 22 N -0.893 5.893 23 Si 0.890 3.110 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.277 1.277 27 N -0.471 5.471 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.339 0.661 38 H 0.348 0.652 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.016 0.984 42 H 0.037 0.963 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.003 20.991 16.102 26.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.211 6.211 3 C 0.100 3.900 4 C -0.232 4.232 5 C -0.095 4.095 6 C -0.180 4.180 7 C -0.086 4.086 8 C -0.124 4.124 9 C -0.016 4.016 10 C -0.098 4.098 11 N -0.101 5.101 12 O 0.013 5.987 13 C -0.068 4.068 14 C 0.072 3.928 15 H 0.141 0.859 16 N -0.341 5.341 17 C -0.140 4.140 18 C -0.005 4.005 19 C -0.561 4.561 20 H 0.070 0.930 21 C -0.143 4.143 22 N -0.532 5.532 23 Si 0.718 3.282 24 H -0.204 1.204 25 H -0.213 1.213 26 H -0.203 1.203 27 N -0.204 5.204 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.147 0.853 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.115 0.885 36 H 0.125 0.875 37 H 0.152 0.848 38 H 0.163 0.837 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.034 0.966 42 H 0.055 0.945 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.967 20.499 16.145 26.393 hybrid contribution 0.599 0.043 0.366 0.704 sum -3.367 20.542 16.511 26.570 Atomic orbital electron populations 1.23082 0.78342 1.04344 1.00942 1.86210 1.21249 1.25894 1.87736 1.18886 0.91656 0.84752 0.94728 1.21252 1.00152 0.92308 1.09448 1.20972 0.94703 0.96989 0.96885 1.21024 0.93920 0.98323 1.04706 1.20944 1.00083 0.90942 0.96641 1.18925 0.90530 0.94842 1.08079 1.18623 1.00782 0.95141 0.87053 1.25583 0.88965 0.95482 0.99764 1.74560 1.23245 1.18614 0.93697 1.85236 1.39249 1.44997 1.29183 1.31204 0.84382 0.93843 0.97394 1.20795 1.01551 0.91107 0.79378 0.85938 1.58830 1.15189 1.29588 1.30516 1.21832 0.97954 0.92240 1.01979 1.19010 0.95490 0.92365 0.93616 1.21216 1.10252 1.02999 1.21647 0.92972 1.24979 0.95189 0.98333 0.95773 1.69961 1.24371 1.34219 1.24637 0.86702 0.80606 0.83212 0.77714 1.20360 1.21336 1.20297 1.71956 1.28058 1.16925 1.03435 0.92876 0.92736 0.87864 0.85301 0.85777 0.85760 0.85226 0.88470 0.87485 0.84831 0.83748 0.92464 0.92331 0.96613 0.94490 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -3.54 9.63 -19.42 -0.19 -3.73 16 3 C 0.15 1.68 6.66 -39.22 -0.26 1.42 16 4 C -0.21 -2.03 9.04 -39.43 -0.36 -2.39 16 5 C -0.08 -0.66 10.04 -39.60 -0.40 -1.06 16 6 C -0.16 -1.42 10.04 -39.56 -0.40 -1.82 16 7 C -0.07 -0.68 9.68 -39.61 -0.38 -1.06 16 8 C -0.12 -1.41 5.13 -104.48 -0.54 -1.95 16 9 C 0.02 0.27 5.69 -29.04 -0.17 0.11 16 10 C 0.18 2.68 7.45 -156.37 -1.17 1.52 16 11 N -0.39 -6.30 12.16 30.90 0.38 -5.93 16 12 O 0.07 1.14 11.29 18.09 0.20 1.34 16 13 C 0.16 2.51 7.31 -13.06 -0.10 2.42 16 14 C 0.19 3.07 3.29 -68.86 -0.23 2.84 16 15 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 16 N -0.81 -12.03 8.68 -5.65 -0.05 -12.08 16 17 C -0.10 -2.01 4.78 -26.73 -0.13 -2.14 16 18 C 0.03 0.81 4.86 -27.88 -0.14 0.68 16 19 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 20 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 23 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 N -0.47 -7.84 11.55 -9.87 -0.11 -7.96 16 28 H 0.05 0.33 7.67 -51.93 -0.40 -0.07 16 29 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.13 0.96 6.30 -52.49 -0.33 0.63 16 32 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 34 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 35 H 0.10 0.97 8.05 -51.92 -0.42 0.55 16 36 H 0.11 1.26 7.69 -51.93 -0.40 0.86 16 37 H 0.34 4.21 9.06 -39.29 -0.36 3.85 16 38 H 0.35 4.81 8.97 -39.29 -0.35 4.46 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -32.95 369.90 -8.13 -41.08 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.98 Total: 4.62 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -3.67 Total: -13.63 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.95 Total: -51.96 kcal Atomic # 8 Polarization: -2.41 SS G_CDS: 0.02 Total: -2.39 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.95 -8.13 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822643562.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.535 kcal (2) G-P(sol) polarization free energy of solvation -32.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds