Wall clock time and date at job start Tue Mar 31 2020 11:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 117.00093 * 2 1 4 4 C 1.38754 * 120.05516 * 359.72833 * 3 2 1 5 5 C 1.38125 * 119.93889 * 179.70405 * 4 3 2 6 6 C 1.38289 * 120.05977 * 0.58874 * 5 4 3 7 7 C 1.38241 * 120.10753 * 359.68484 * 6 5 4 8 8 C 1.38169 * 120.05726 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.02655 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47342 * 265.02045 * 9 8 7 11 11 N 1.29949 * 126.28851 * 90.02060 * 10 9 8 12 12 O 1.21296 * 110.25281 * 179.97438 * 11 10 9 13 13 C 1.33648 * 109.81372 * 0.02562 * 12 11 10 14 14 C 1.50697 * 126.55329 * 179.97438 * 13 12 11 15 15 H 1.08999 * 109.47237 * 195.02970 * 14 13 12 16 16 N 1.46907 * 109.46940 * 315.02539 * 14 13 12 17 17 C 1.52996 * 109.47002 * 75.02343 * 14 13 12 18 18 C 1.52999 * 109.46805 * 174.99792 * 17 14 13 19 19 C 1.50704 * 109.47156 * 180.02562 * 18 17 14 20 20 H 1.08004 * 119.99961 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00365 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99679 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00231 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47540 * 59.99462 * 23 21 19 25 25 H 1.48497 * 109.47395 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46880 * 299.99810 * 23 21 19 27 27 N 1.31125 * 106.89069 * 359.76883 * 13 12 11 28 28 H 1.09001 * 109.47103 * 300.00408 * 1 2 3 29 29 H 1.09004 * 109.47054 * 59.99912 * 1 2 3 30 30 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.03298 * 359.97012 * 4 3 2 32 32 H 1.08008 * 119.96721 * 180.29817 * 5 4 3 33 33 H 1.07994 * 119.94595 * 179.70675 * 6 5 4 34 34 H 1.08004 * 119.96948 * 179.97438 * 7 6 5 35 35 H 1.09008 * 109.47325 * 25.02170 * 9 8 7 36 36 H 1.08998 * 109.47382 * 145.02294 * 9 8 7 37 37 H 1.00899 * 111.00092 * 296.04384 * 16 14 13 38 38 H 1.00897 * 110.99710 * 60.00221 * 16 14 13 39 39 H 1.08997 * 109.47579 * 294.99879 * 17 14 13 40 40 H 1.09006 * 109.47113 * 55.00514 * 17 14 13 41 41 H 1.08996 * 109.47645 * 300.00387 * 18 17 14 42 42 H 1.09003 * 109.47361 * 60.00771 * 18 17 14 43 43 H 0.96999 * 119.99466 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0057 5 6 1.9210 3.6047 0.0005 6 6 3.3021 3.6757 0.0001 7 6 4.0561 2.5170 0.0000 8 6 3.4311 1.2847 -0.0001 9 6 4.2537 0.0221 -0.0008 10 6 4.4241 -0.4658 -1.4164 11 7 5.3856 -0.1454 -2.2298 12 8 5.2380 -0.7053 -3.2956 13 6 4.1345 -1.4585 -3.2626 14 6 3.5966 -2.3121 -4.3821 15 1 2.5659 -2.5910 -4.1633 16 7 3.6425 -1.5552 -5.6404 17 6 4.4496 -3.5752 -4.5153 18 6 3.8315 -4.4994 -5.5663 19 6 4.6713 -5.7439 -5.6972 20 1 5.5576 -5.8634 -5.0916 21 6 4.3089 -6.7294 -6.5907 22 7 3.2300 -6.5837 -7.3284 23 14 5.3494 -8.2723 -6.7523 24 1 5.4002 -8.9745 -5.4448 25 1 4.7496 -9.1694 -7.7724 26 1 6.7257 -7.8998 -7.1678 27 7 3.6117 -1.3163 -2.0686 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2129 2.3204 -0.0106 32 1 1.3341 4.5114 0.0009 33 1 3.7924 4.6379 0.0001 34 1 5.1345 2.5751 -0.0007 35 1 5.2325 0.2258 0.4337 36 1 3.7467 -0.7422 0.5883 37 1 3.0359 -0.7499 -5.6003 38 1 4.5882 -1.2848 -5.8653 39 1 5.4593 -3.3012 -4.8212 40 1 4.4879 -4.0907 -3.5556 41 1 2.8218 -4.7734 -5.2605 42 1 3.7932 -3.9840 -6.5260 43 1 2.9748 -7.2772 -7.9568 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822643562.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:30 Heat of formation + Delta-G solvation = 21.716661 kcal Electronic energy + Delta-G solvation = -25759.204424 eV Core-core repulsion = 21999.686065 eV Total energy + Delta-G solvation = -3759.518358 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.63602 -41.22782 -38.43946 -38.11076 -37.11742 -35.16242 -34.22905 -32.55314 -31.95991 -31.11168 -28.91979 -28.20884 -27.95540 -25.75755 -24.68713 -23.22538 -23.07796 -22.34287 -21.31310 -19.20143 -18.95481 -18.66252 -18.21817 -17.31723 -17.20782 -16.75247 -16.63602 -16.58116 -16.22645 -15.51154 -15.43480 -15.31800 -14.74023 -14.45523 -14.28693 -14.09868 -13.78591 -13.51460 -13.42584 -13.17422 -13.00673 -12.78696 -12.73349 -12.47834 -12.44703 -12.30233 -12.05601 -12.01953 -11.85413 -11.69037 -11.49043 -11.21161 -10.83717 -10.47683 -10.02556 -9.92963 -9.17138 -8.12249 -6.21869 0.01770 0.24571 0.43237 1.18645 1.43642 1.45864 1.53538 1.71914 2.38051 2.45298 2.51768 2.78830 3.04626 3.21130 3.52012 3.66577 3.75417 3.91825 4.02303 4.06369 4.22548 4.28590 4.30747 4.36786 4.42265 4.43833 4.54898 4.64608 4.72751 4.76732 4.81016 4.89356 4.95960 5.04260 5.23170 5.31803 5.41580 5.52055 5.59130 5.81109 5.84379 5.98580 6.00258 6.31772 6.43218 6.45343 6.95846 7.09270 7.45853 8.98879 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022688 B = 0.002555 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.850773 B =10956.653014 C =11364.617189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.324 6.324 3 C 0.126 3.874 4 C -0.219 4.219 5 C -0.077 4.077 6 C -0.164 4.164 7 C -0.076 4.076 8 C -0.144 4.144 9 C 0.024 3.976 10 C 0.178 3.822 11 N -0.401 5.401 12 O 0.066 5.934 13 C 0.157 3.843 14 C 0.202 3.798 15 H 0.120 0.880 16 N -0.818 5.818 17 C -0.088 4.088 18 C 0.041 3.959 19 C -0.544 4.544 20 H 0.055 0.945 21 C 0.003 3.997 22 N -0.928 5.928 23 Si 0.958 3.042 24 H -0.270 1.270 25 H -0.284 1.284 26 H -0.268 1.268 27 N -0.485 5.485 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.108 0.892 31 H 0.146 0.854 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.140 0.860 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.355 0.645 38 H 0.355 0.645 39 H 0.061 0.939 40 H 0.054 0.946 41 H -0.009 1.009 42 H 0.018 0.982 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.614 22.235 16.916 28.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.238 6.238 3 C 0.080 3.920 4 C -0.238 4.238 5 C -0.095 4.095 6 C -0.182 4.182 7 C -0.094 4.094 8 C -0.146 4.146 9 C -0.015 4.015 10 C -0.095 4.095 11 N -0.111 5.111 12 O 0.011 5.989 13 C -0.066 4.066 14 C 0.087 3.913 15 H 0.138 0.862 16 N -0.348 5.348 17 C -0.127 4.127 18 C 0.003 3.997 19 C -0.582 4.582 20 H 0.073 0.927 21 C -0.195 4.195 22 N -0.569 5.569 23 Si 0.783 3.217 24 H -0.195 1.195 25 H -0.209 1.209 26 H -0.193 1.193 27 N -0.219 5.219 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.126 0.874 31 H 0.164 0.836 32 H 0.170 0.830 33 H 0.166 0.834 34 H 0.158 0.842 35 H 0.133 0.867 36 H 0.122 0.878 37 H 0.169 0.831 38 H 0.170 0.830 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.010 0.990 42 H 0.036 0.964 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.572 21.762 16.958 27.819 hybrid contribution 0.426 -0.264 0.140 0.520 sum -3.146 21.498 17.097 27.647 Atomic orbital electron populations 1.23268 0.76883 1.05106 1.02012 1.86162 1.22970 1.26608 1.88020 1.19144 0.91987 0.85280 0.95587 1.21531 1.01107 0.92108 1.09018 1.21366 0.94996 0.97664 0.95477 1.21369 0.94238 0.98920 1.03697 1.21165 1.00847 0.90894 0.96510 1.19022 0.90793 0.94983 1.09774 1.18760 1.01983 0.95562 0.85153 1.26155 0.88070 0.94513 1.00759 1.74553 1.23673 1.19117 0.93806 1.85223 1.39129 1.45072 1.29435 1.30975 0.84515 0.93977 0.97157 1.20369 1.00508 0.90133 0.80291 0.86191 1.58784 1.16135 1.30479 1.29440 1.21537 0.98306 0.92893 0.99952 1.18811 0.94214 0.92485 0.94143 1.21685 1.10666 1.04252 1.21643 0.92677 1.25865 0.96412 1.01763 0.95437 1.70088 1.26017 1.35419 1.25341 0.85617 0.79068 0.79093 0.77948 1.19542 1.20893 1.19322 1.71976 1.28710 1.17526 1.03680 0.91025 0.92364 0.87364 0.83607 0.83014 0.83410 0.84227 0.86659 0.87784 0.83079 0.82970 0.92032 0.92761 0.99025 0.96378 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.45 16 2 O -0.32 -7.64 9.63 -92.39 -0.89 -8.53 16 3 C 0.13 2.82 6.66 22.51 0.15 2.97 16 4 C -0.22 -3.82 9.04 22.37 0.20 -3.61 16 5 C -0.08 -1.13 10.04 22.25 0.22 -0.90 16 6 C -0.16 -2.50 10.04 22.28 0.22 -2.28 16 7 C -0.08 -1.41 9.68 22.25 0.22 -1.20 16 8 C -0.14 -3.23 5.13 -19.77 -0.10 -3.33 16 9 C 0.02 0.57 5.69 29.10 0.17 0.73 16 10 C 0.18 5.37 7.45 138.46 1.03 6.41 16 11 N -0.40 -12.62 12.16 -60.31 -0.73 -13.35 16 12 O 0.07 2.11 11.29 74.80 0.84 2.95 16 13 C 0.16 5.04 7.31 88.38 0.65 5.69 16 14 C 0.20 6.64 3.29 44.17 0.15 6.78 16 15 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 16 N -0.82 -23.85 8.68 -171.80 -1.49 -25.34 16 17 C -0.09 -3.52 4.78 30.59 0.15 -3.38 16 18 C 0.04 2.09 4.86 29.85 0.15 2.23 16 19 C -0.54 -30.80 9.11 25.60 0.23 -30.57 16 20 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 21 C 0.00 0.19 5.46 84.65 0.46 0.65 16 22 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 23 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 27 N -0.49 -16.08 11.55 -303.19 -3.50 -19.58 16 28 H 0.07 0.80 7.67 -2.39 -0.02 0.78 16 29 H 0.06 0.82 7.65 -2.38 -0.02 0.81 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.15 1.89 6.30 -2.91 -0.02 1.88 16 32 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 33 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 35 H 0.12 2.20 8.05 -2.38 -0.02 2.18 16 36 H 0.10 2.47 7.69 -2.39 -0.02 2.45 16 37 H 0.35 8.50 9.06 -89.69 -0.81 7.69 16 38 H 0.36 9.57 8.97 -89.70 -0.80 8.77 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 41 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 42 H 0.02 0.98 7.75 -2.39 -0.02 0.96 16 43 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -70.44 369.90 0.97 -69.46 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: -0.57 Total: 22.28 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: 5.00 Total: -18.37 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -5.44 Total: -114.29 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.05 Total: -5.57 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -70.44 0.97 -69.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822643562.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.179 kcal (2) G-P(sol) polarization free energy of solvation -70.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds