Wall clock time and date at job start Tue Mar 31 2020 11:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35905 * 117.00240 * 2 1 4 4 C 1.38755 * 120.05189 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94425 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.05481 * 359.97267 * 5 4 3 7 7 C 1.38247 * 120.11155 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.97001 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47359 * 90.00353 * 8 7 6 10 10 N 1.29954 * 126.28779 * 90.01930 * 9 8 7 11 11 O 1.21301 * 110.24891 * 179.97438 * 10 9 8 12 12 C 1.33644 * 109.81284 * 359.97438 * 11 10 9 13 13 C 1.50697 * 126.54855 * 180.02562 * 12 11 10 14 14 H 1.09004 * 109.46955 * 165.02701 * 13 12 11 15 15 N 1.46900 * 109.47547 * 45.02322 * 13 12 11 16 16 C 1.53006 * 109.47008 * 285.02344 * 13 12 11 17 17 C 1.53007 * 109.47072 * 185.00121 * 16 13 12 18 18 C 1.50693 * 109.47066 * 179.97438 * 17 16 13 19 19 H 1.08000 * 120.00427 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00081 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99721 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00086 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46787 * 90.00356 * 22 20 18 24 24 H 1.48502 * 109.46873 * 210.00541 * 22 20 18 25 25 H 1.48494 * 109.46837 * 330.00177 * 22 20 18 26 26 N 1.31127 * 106.89855 * 359.77051 * 12 11 10 27 27 C 1.38165 * 120.05172 * 359.74987 * 7 6 5 28 28 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47220 * 299.99819 * 1 2 3 30 30 H 1.08996 * 109.47672 * 59.99762 * 1 2 3 31 31 H 1.08000 * 120.03110 * 359.95190 * 4 3 2 32 32 H 1.08000 * 119.97761 * 179.97438 * 5 4 3 33 33 H 1.08001 * 119.94121 * 180.02562 * 6 5 4 34 34 H 1.09003 * 109.47272 * 210.00007 * 8 7 6 35 35 H 1.09002 * 109.47295 * 330.00398 * 8 7 6 36 36 H 1.00899 * 111.00023 * 176.04332 * 15 13 12 37 37 H 1.00893 * 111.00217 * 300.00223 * 15 13 12 38 38 H 1.08999 * 109.47011 * 305.00264 * 16 13 12 39 39 H 1.08997 * 109.46804 * 65.00811 * 16 13 12 40 40 H 1.08995 * 109.46972 * 300.00310 * 17 16 13 41 41 H 1.09001 * 109.46971 * 59.99954 * 17 16 13 42 42 H 0.97009 * 119.99809 * 179.97438 * 21 20 18 43 43 H 1.08001 * 120.02453 * 180.24915 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3018 3.6758 0.0016 7 6 4.0559 2.5171 0.0011 8 6 5.5607 2.5982 0.0024 9 6 6.0613 2.6239 1.4235 10 7 6.3735 1.5910 2.1478 11 8 6.7431 1.9455 3.2473 12 6 6.7009 3.2787 3.3314 13 6 7.0790 4.1149 4.5267 14 1 7.1965 5.1544 4.2204 15 7 8.3446 3.6235 5.0876 16 6 5.9794 4.0167 5.5861 17 6 6.3023 4.9616 6.7455 18 6 5.2191 4.8653 7.7886 19 1 4.3840 4.1968 7.6399 20 6 5.2945 5.6299 8.9334 21 7 6.3116 6.4436 9.1148 22 14 3.9520 5.5101 10.2268 23 1 4.3033 4.4524 11.2082 24 1 3.8225 6.8127 10.9280 25 1 2.6632 5.1699 9.5724 26 7 6.2731 3.7203 2.1732 27 6 3.4310 1.2849 0.0053 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2127 2.3204 0.0002 32 1 1.3339 4.5114 0.0011 33 1 3.7921 4.6381 0.0025 34 1 5.9718 1.7296 -0.5120 35 1 5.8760 3.5070 -0.5103 36 1 8.6528 4.2074 5.8507 37 1 8.2615 2.6613 5.3793 38 1 5.0232 4.2971 5.1444 39 1 5.9224 2.9932 5.9567 40 1 7.2586 4.6812 7.1871 41 1 6.3595 5.9850 6.3749 42 1 6.3645 6.9819 9.9201 43 1 4.0205 0.3800 0.0090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822722654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:33 Heat of formation + Delta-G solvation = 39.940130 kcal Electronic energy + Delta-G solvation = -25377.054992 eV Core-core repulsion = 21618.326863 eV Total energy + Delta-G solvation = -3758.728130 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.37462 -40.37723 -38.02780 -36.82185 -35.81733 -33.40484 -32.85767 -31.35628 -30.69453 -30.05521 -27.94839 -27.28563 -26.63063 -24.27740 -23.43928 -22.70512 -21.87265 -20.98466 -19.97268 -18.14925 -17.75484 -17.27078 -16.65020 -16.42778 -16.17494 -16.00724 -15.88327 -14.79002 -14.59357 -14.52552 -14.24842 -14.09138 -13.61437 -13.50140 -13.43220 -12.78839 -12.62538 -12.42175 -12.24965 -12.18215 -11.89644 -11.75113 -11.38427 -11.31699 -11.13924 -11.03629 -10.95968 -10.81461 -10.64480 -10.05494 -9.89187 -9.57952 -9.29125 -9.11194 -8.52575 -8.44761 -8.42026 -6.11238 -4.14270 0.99490 1.24638 1.37522 2.37897 2.99481 3.04169 3.26302 3.33128 3.36500 3.42040 3.79426 4.13826 4.37934 4.48907 4.54847 4.75307 4.82419 4.84346 4.87828 5.01681 5.11610 5.13940 5.20379 5.25331 5.29102 5.38402 5.45911 5.53000 5.62187 5.78370 5.88919 6.04940 6.11011 6.21769 6.29459 6.37000 6.42914 6.50214 6.78142 7.14076 7.21492 7.44537 7.56817 7.63495 7.85693 8.27257 8.34774 8.91207 9.50876 10.99727 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011757 B = 0.002927 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.057816 B = 9563.830427 C =11064.312330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.124 3.876 4 C -0.206 4.206 5 C -0.080 4.080 6 C -0.136 4.136 7 C -0.048 4.048 8 C 0.015 3.985 9 C 0.171 3.829 10 N -0.387 5.387 11 O 0.078 5.922 12 C 0.216 3.784 13 C 0.180 3.820 14 H 0.123 0.877 15 N -0.840 5.840 16 C -0.143 4.143 17 C 0.026 3.974 18 C -0.525 4.525 19 H 0.055 0.945 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 N -0.484 5.484 27 C -0.138 4.138 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.366 0.634 37 H 0.344 0.656 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.020 0.980 41 H 0.022 0.978 42 H 0.262 0.738 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.369 -8.576 -20.147 22.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.079 3.921 4 C -0.224 4.224 5 C -0.098 4.098 6 C -0.155 4.155 7 C -0.050 4.050 8 C -0.024 4.024 9 C -0.102 4.102 10 N -0.096 5.096 11 O 0.020 5.980 12 C -0.005 4.005 13 C 0.067 3.933 14 H 0.140 0.860 15 N -0.373 5.373 16 C -0.183 4.183 17 C -0.011 4.011 18 C -0.563 4.563 19 H 0.073 0.927 20 C -0.142 4.142 21 N -0.531 5.531 22 Si 0.721 3.279 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 N -0.217 5.217 27 C -0.157 4.157 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.183 0.817 37 H 0.157 0.843 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.038 0.962 41 H 0.040 0.960 42 H 0.072 0.928 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.061 -9.005 -21.340 23.943 hybrid contribution -1.604 0.049 1.885 2.476 sum -7.665 -8.957 -19.456 22.749 Atomic orbital electron populations 1.23057 0.78367 1.03960 1.01376 1.86072 1.21396 1.26888 1.88781 1.18946 0.92172 0.84236 0.96745 1.21272 1.00057 0.92454 1.08646 1.20950 0.94531 0.97099 0.97219 1.21045 0.93771 0.98220 1.02432 1.19331 0.94064 0.92689 0.98889 1.18822 0.91104 1.05594 0.86836 1.25456 1.00866 0.84109 0.99784 1.74584 1.18043 1.23899 0.93059 1.85256 1.61034 1.24817 1.26855 1.29061 0.93314 0.81835 0.96315 1.20221 0.91102 0.95626 0.86398 0.85960 1.58975 1.28297 1.08420 1.41642 1.22533 0.97052 1.02251 0.96443 1.19098 0.97268 0.93840 0.90939 1.21147 1.07658 1.24121 1.03344 0.92651 1.24998 0.95846 0.95142 0.98244 1.69944 1.29963 1.25828 1.27406 0.86576 0.82250 0.77463 0.81650 1.20578 1.21112 1.19878 1.71848 1.19364 1.28746 1.01783 1.20293 0.91485 0.98162 1.05744 0.88218 0.92565 0.92676 0.85454 0.85437 0.85218 0.88067 0.87391 0.81684 0.84345 0.92024 0.92247 0.96192 0.95988 0.92822 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.57 10.50 -19.44 -0.20 -3.77 16 3 C 0.12 1.47 6.69 -39.22 -0.26 1.21 16 4 C -0.21 -2.15 9.04 -39.43 -0.36 -2.51 16 5 C -0.08 -0.83 10.04 -39.61 -0.40 -1.23 16 6 C -0.14 -1.54 9.70 -39.56 -0.38 -1.92 16 7 C -0.05 -0.57 5.11 -104.65 -0.54 -1.11 16 8 C 0.02 0.17 5.97 -29.04 -0.17 -0.01 16 9 C 0.17 2.58 7.45 -156.36 -1.17 1.41 16 10 N -0.39 -6.34 12.16 30.90 0.38 -5.97 16 11 O 0.08 1.30 11.29 18.10 0.20 1.50 16 12 C 0.22 3.58 7.32 -13.06 -0.10 3.48 16 13 C 0.18 2.93 3.35 -68.86 -0.23 2.70 16 14 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 15 N -0.84 -12.41 9.17 -5.65 -0.05 -12.47 16 16 C -0.14 -2.72 4.78 -26.72 -0.13 -2.85 16 17 C 0.03 0.60 4.74 -27.88 -0.13 0.47 16 18 C -0.52 -14.17 9.11 -34.44 -0.31 -14.48 16 19 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 22 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 N -0.48 -7.99 11.55 -9.86 -0.11 -8.10 16 27 C -0.14 -1.69 9.64 -39.44 -0.38 -2.07 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 30 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 31 H 0.13 1.03 6.30 -52.49 -0.33 0.70 16 32 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.10 0.95 8.09 -51.93 -0.42 0.53 16 35 H 0.11 1.01 8.08 -51.93 -0.42 0.59 16 36 H 0.37 5.45 7.55 -39.29 -0.30 5.15 16 37 H 0.34 4.76 8.98 -39.30 -0.35 4.41 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.02 0.47 6.87 -51.93 -0.36 0.11 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -31.37 369.14 -8.07 -39.44 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.90 Total: 6.76 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -3.66 Total: -14.17 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.95 Total: -51.40 kcal Atomic # 8 Polarization: -2.27 SS G_CDS: 0.00 Total: -2.27 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.37 -8.07 -39.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822722654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.381 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds