Wall clock time and date at job start Tue Mar 31 2020 11:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35905 * 117.00240 * 2 1 4 4 C 1.38755 * 120.05189 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94425 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.05481 * 359.97267 * 5 4 3 7 7 C 1.38247 * 120.11155 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.97001 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47359 * 90.00353 * 8 7 6 10 10 N 1.29954 * 126.28779 * 90.01930 * 9 8 7 11 11 O 1.21301 * 110.24891 * 179.97438 * 10 9 8 12 12 C 1.33644 * 109.81284 * 359.97438 * 11 10 9 13 13 C 1.50697 * 126.54855 * 180.02562 * 12 11 10 14 14 H 1.09004 * 109.46955 * 165.02701 * 13 12 11 15 15 N 1.46900 * 109.47547 * 45.02322 * 13 12 11 16 16 C 1.53006 * 109.47008 * 285.02344 * 13 12 11 17 17 C 1.53007 * 109.47072 * 185.00121 * 16 13 12 18 18 C 1.50693 * 109.47066 * 179.97438 * 17 16 13 19 19 H 1.08000 * 120.00427 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00081 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99721 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00086 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46787 * 90.00356 * 22 20 18 24 24 H 1.48502 * 109.46873 * 210.00541 * 22 20 18 25 25 H 1.48494 * 109.46837 * 330.00177 * 22 20 18 26 26 N 1.31127 * 106.89855 * 359.77051 * 12 11 10 27 27 C 1.38165 * 120.05172 * 359.74987 * 7 6 5 28 28 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47220 * 299.99819 * 1 2 3 30 30 H 1.08996 * 109.47672 * 59.99762 * 1 2 3 31 31 H 1.08000 * 120.03110 * 359.95190 * 4 3 2 32 32 H 1.08000 * 119.97761 * 179.97438 * 5 4 3 33 33 H 1.08001 * 119.94121 * 180.02562 * 6 5 4 34 34 H 1.09003 * 109.47272 * 210.00007 * 8 7 6 35 35 H 1.09002 * 109.47295 * 330.00398 * 8 7 6 36 36 H 1.00899 * 111.00023 * 176.04332 * 15 13 12 37 37 H 1.00893 * 111.00217 * 300.00223 * 15 13 12 38 38 H 1.08999 * 109.47011 * 305.00264 * 16 13 12 39 39 H 1.08997 * 109.46804 * 65.00811 * 16 13 12 40 40 H 1.08995 * 109.46972 * 300.00310 * 17 16 13 41 41 H 1.09001 * 109.46971 * 59.99954 * 17 16 13 42 42 H 0.97009 * 119.99809 * 179.97438 * 21 20 18 43 43 H 1.08001 * 120.02453 * 180.24915 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3018 3.6758 0.0016 7 6 4.0559 2.5171 0.0011 8 6 5.5607 2.5982 0.0024 9 6 6.0613 2.6239 1.4235 10 7 6.3735 1.5910 2.1478 11 8 6.7431 1.9455 3.2473 12 6 6.7009 3.2787 3.3314 13 6 7.0790 4.1149 4.5267 14 1 7.1965 5.1544 4.2204 15 7 8.3446 3.6235 5.0876 16 6 5.9794 4.0167 5.5861 17 6 6.3023 4.9616 6.7455 18 6 5.2191 4.8653 7.7886 19 1 4.3840 4.1968 7.6399 20 6 5.2945 5.6299 8.9334 21 7 6.3116 6.4436 9.1148 22 14 3.9520 5.5101 10.2268 23 1 4.3033 4.4524 11.2082 24 1 3.8225 6.8127 10.9280 25 1 2.6632 5.1699 9.5724 26 7 6.2731 3.7203 2.1732 27 6 3.4310 1.2849 0.0053 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2127 2.3204 0.0002 32 1 1.3339 4.5114 0.0011 33 1 3.7921 4.6381 0.0025 34 1 5.9718 1.7296 -0.5120 35 1 5.8760 3.5070 -0.5103 36 1 8.6528 4.2074 5.8507 37 1 8.2615 2.6613 5.3793 38 1 5.0232 4.2971 5.1444 39 1 5.9224 2.9932 5.9567 40 1 7.2586 4.6812 7.1871 41 1 6.3595 5.9850 6.3749 42 1 6.3645 6.9819 9.9201 43 1 4.0205 0.3800 0.0090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822722654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:32 Heat of formation + Delta-G solvation = 18.805852 kcal Electronic energy + Delta-G solvation = -25377.971443 eV Core-core repulsion = 21618.326863 eV Total energy + Delta-G solvation = -3759.644581 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.62868 -41.16646 -38.84143 -38.26903 -36.98726 -35.15602 -34.10771 -32.54323 -31.73347 -31.49400 -28.79320 -28.24694 -27.97580 -25.95336 -24.67436 -23.54571 -23.15077 -22.24932 -21.27395 -19.19955 -18.91087 -18.65497 -18.21992 -17.45092 -17.20913 -16.96442 -16.71154 -16.46555 -16.00057 -15.47542 -15.39599 -15.10794 -14.98336 -14.70153 -14.43029 -14.17976 -13.94413 -13.48151 -13.40884 -13.16951 -13.04296 -12.97227 -12.78250 -12.67679 -12.50696 -12.38890 -12.10644 -12.01910 -11.86148 -11.80154 -11.54595 -11.32839 -10.99097 -10.54850 -9.95872 -9.83283 -9.24290 -8.20991 -6.30566 0.02973 0.21290 0.40580 1.16914 1.40449 1.41281 1.51538 1.74405 2.29892 2.39741 2.44854 2.72688 3.05919 3.13263 3.64472 3.66962 3.77377 3.83571 4.01186 4.08879 4.18424 4.19646 4.30482 4.31960 4.34719 4.46484 4.47789 4.63867 4.68145 4.71325 4.74958 4.81620 4.90744 5.01264 5.05483 5.24259 5.40214 5.47123 5.52955 5.65973 5.71740 5.80911 5.95788 6.21668 6.38350 6.41594 6.84176 7.09156 7.38356 8.89801 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011757 B = 0.002927 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.057816 B = 9563.830427 C =11064.312330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.110 3.890 4 C -0.207 4.207 5 C -0.084 4.084 6 C -0.148 4.148 7 C -0.057 4.057 8 C 0.016 3.984 9 C 0.176 3.824 10 N -0.402 5.402 11 O 0.069 5.931 12 C 0.211 3.789 13 C 0.194 3.806 14 H 0.124 0.876 15 N -0.832 5.832 16 C -0.127 4.127 17 C 0.032 3.968 18 C -0.546 4.546 19 H 0.053 0.947 20 C 0.008 3.992 21 N -0.924 5.924 22 Si 0.956 3.044 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.269 1.269 26 N -0.493 5.493 27 C -0.157 4.157 28 H 0.118 0.882 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.138 0.862 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.366 0.634 37 H 0.351 0.649 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.016 0.984 41 H 0.002 0.998 42 H 0.264 0.736 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.593 -8.802 -20.784 23.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.065 3.935 4 C -0.226 4.226 5 C -0.102 4.102 6 C -0.167 4.167 7 C -0.058 4.058 8 C -0.023 4.023 9 C -0.097 4.097 10 N -0.112 5.112 11 O 0.015 5.985 12 C -0.010 4.010 13 C 0.080 3.920 14 H 0.142 0.858 15 N -0.366 5.366 16 C -0.167 4.167 17 C -0.006 4.006 18 C -0.584 4.584 19 H 0.071 0.929 20 C -0.191 4.191 21 N -0.564 5.564 22 Si 0.781 3.219 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.194 1.194 26 N -0.227 5.227 27 C -0.176 4.176 28 H 0.136 0.864 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.168 0.832 32 H 0.169 0.831 33 H 0.156 0.844 34 H 0.136 0.864 35 H 0.146 0.854 36 H 0.183 0.817 37 H 0.164 0.836 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.034 0.966 41 H 0.020 0.980 42 H 0.073 0.927 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.283 -9.251 -21.971 24.927 hybrid contribution -1.274 0.090 2.029 2.397 sum -8.557 -9.161 -19.943 23.556 Atomic orbital electron populations 1.23345 0.76370 1.05596 1.02275 1.86045 1.23566 1.26868 1.88759 1.19154 0.92350 0.85023 0.96947 1.21567 1.01276 0.91978 1.07772 1.21290 0.94502 0.98062 0.96320 1.21271 0.94423 0.98394 1.02571 1.19396 0.94263 0.92782 0.99352 1.19054 0.90922 1.07455 0.84846 1.26105 0.99483 0.83241 1.00843 1.74585 1.18962 1.24474 0.93194 1.85242 1.61344 1.24719 1.27219 1.28984 0.93586 0.81977 0.96479 1.19943 0.90461 0.95886 0.85731 0.85849 1.58965 1.27146 1.08859 1.41646 1.22275 0.97628 1.01019 0.95782 1.18953 0.96233 0.93681 0.91695 1.21591 1.08418 1.23969 1.04414 0.92897 1.25808 0.98008 0.94862 1.00389 1.70045 1.31619 1.26615 1.28139 0.85581 0.79581 0.77626 0.79084 1.19817 1.20692 1.19372 1.71865 1.19458 1.29416 1.01969 1.20428 0.92099 0.98325 1.06744 0.86375 0.92160 0.91178 0.83185 0.83149 0.84428 0.86376 0.85409 0.81651 0.83555 0.92938 0.92032 0.96604 0.98008 0.92670 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.35 10.50 -92.48 -0.97 -8.32 16 3 C 0.11 2.54 6.69 22.50 0.15 2.69 16 4 C -0.21 -4.00 9.04 22.37 0.20 -3.80 16 5 C -0.08 -1.60 10.04 22.25 0.22 -1.37 16 6 C -0.15 -3.15 9.70 22.28 0.22 -2.94 16 7 C -0.06 -1.29 5.11 -19.88 -0.10 -1.39 16 8 C 0.02 0.33 5.97 29.10 0.17 0.50 16 9 C 0.18 5.15 7.45 138.46 1.03 6.18 16 10 N -0.40 -12.91 12.16 -60.29 -0.73 -13.64 16 11 O 0.07 2.28 11.29 74.82 0.84 3.13 16 12 C 0.21 6.85 7.32 88.38 0.65 7.50 16 13 C 0.19 6.22 3.35 44.17 0.15 6.37 16 14 H 0.12 3.97 8.14 -2.38 -0.02 3.95 16 15 N -0.83 -24.06 9.17 -171.79 -1.58 -25.63 16 16 C -0.13 -4.82 4.78 30.60 0.15 -4.68 16 17 C 0.03 1.50 4.74 29.85 0.14 1.64 16 18 C -0.55 -29.57 9.11 25.60 0.23 -29.33 16 19 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 20 C 0.01 0.45 5.46 84.65 0.46 0.91 16 21 N -0.92 -53.25 13.29 21.45 0.28 -52.97 16 22 Si 0.96 43.00 29.54 68.60 2.03 45.02 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 N -0.49 -15.83 11.55 -303.18 -3.50 -19.33 16 27 C -0.16 -3.80 9.64 22.36 0.22 -3.59 16 28 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 30 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 31 H 0.15 2.07 6.30 -2.91 -0.02 2.05 16 32 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 34 H 0.12 2.05 8.09 -2.39 -0.02 2.03 16 35 H 0.13 2.15 8.08 -2.39 -0.02 2.13 16 36 H 0.37 10.75 7.55 -89.69 -0.68 10.08 16 37 H 0.35 9.43 8.98 -89.70 -0.81 8.63 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.02 0.75 6.87 -2.39 -0.02 0.74 16 41 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 42 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 43 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -66.23 369.14 0.94 -65.29 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: -0.43 Total: 26.41 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 5.00 Total: -19.96 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -5.53 Total: -111.57 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.13 Total: -5.19 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -66.23 0.94 -65.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822722654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.095 kcal (2) G-P(sol) polarization free energy of solvation -66.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds