Wall clock time and date at job start Tue Mar 31 2020 11:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 C 1.50696 * 119.97662 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47356 * 89.99617 * 8 7 6 10 10 N 1.29951 * 126.28276 * 90.02587 * 9 8 7 11 11 O 1.21301 * 110.24323 * 179.97438 * 10 9 8 12 12 C 1.33638 * 109.81477 * 359.97438 * 11 10 9 13 13 C 1.50701 * 126.55170 * 179.97438 * 12 11 10 14 14 H 1.08994 * 109.47311 * 194.97553 * 13 12 11 15 15 N 1.46901 * 109.47274 * 314.98180 * 13 12 11 16 16 C 1.53005 * 109.46777 * 74.97885 * 13 12 11 17 17 C 1.53000 * 109.47258 * 175.00045 * 16 13 12 18 18 C 1.50695 * 109.47170 * 179.97438 * 17 16 13 19 19 H 1.07996 * 120.00245 * 0.02562 * 18 17 16 20 20 C 1.37885 * 120.00061 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99463 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00183 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46990 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47031 * 119.99942 * 22 20 18 25 25 H 1.48500 * 109.47231 * 240.00506 * 22 20 18 26 26 N 1.31128 * 106.89911 * 359.76755 * 12 11 10 27 27 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 28 28 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 29 29 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 31 31 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 33 33 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 34 34 H 1.09005 * 109.47005 * 209.99445 * 8 7 6 35 35 H 1.08997 * 109.46936 * 329.99322 * 8 7 6 36 36 H 1.00898 * 111.00019 * 59.99816 * 15 13 12 37 37 H 1.00905 * 110.99519 * 183.95021 * 15 13 12 38 38 H 1.08996 * 109.47322 * 294.99982 * 16 13 12 39 39 H 1.08999 * 109.47293 * 55.00296 * 16 13 12 40 40 H 1.09005 * 109.46932 * 300.00357 * 17 16 13 41 41 H 1.08998 * 109.46980 * 59.99420 * 17 16 13 42 42 H 0.97006 * 119.99678 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.02798 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 6 5.5607 2.5982 0.0005 9 6 6.0624 2.6240 1.4214 10 7 6.3751 1.5912 2.1454 11 8 6.7455 1.9459 3.2447 12 6 6.7034 3.2789 3.3286 13 6 7.0812 4.1153 4.5240 14 1 6.6989 5.1278 4.3945 15 7 6.5020 3.5245 5.7378 16 6 8.6051 4.1586 4.6549 17 6 8.9926 5.1070 5.7912 18 6 10.4934 5.1491 5.9206 19 1 11.1093 4.5588 5.2584 20 6 11.0804 5.9420 6.8839 21 7 10.3304 6.6612 7.6900 22 14 12.9408 5.9948 7.0438 23 1 13.5506 5.1022 6.0255 24 1 13.4166 7.3853 6.8312 25 1 13.3340 5.5390 8.4013 26 7 6.2748 3.7204 2.1707 27 6 3.4311 1.2848 0.0003 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2128 2.3203 0.0108 32 1 1.3339 4.5114 0.0034 33 1 3.7922 4.6381 0.0022 34 1 5.9714 1.7294 -0.5140 35 1 5.8757 3.5068 -0.5126 36 1 6.8414 2.5850 5.8801 37 1 6.6869 4.1018 6.5445 38 1 8.9796 3.1584 4.8728 39 1 9.0401 4.5139 3.7208 40 1 8.6181 6.1072 5.5734 41 1 8.5575 4.7517 6.7253 42 1 10.7433 7.2188 8.3679 43 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822722656.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:36 Heat of formation + Delta-G solvation = 39.979754 kcal Electronic energy + Delta-G solvation = -25141.246825 eV Core-core repulsion = 21382.520414 eV Total energy + Delta-G solvation = -3758.726411 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.37840 -40.41978 -38.06556 -36.82375 -35.82656 -33.41371 -32.86912 -31.37151 -30.73149 -30.05667 -27.98202 -27.32154 -26.63293 -24.27985 -23.44956 -22.74284 -21.89898 -20.97515 -19.99888 -18.21722 -17.71130 -17.28051 -16.66552 -16.46241 -16.20960 -16.05359 -15.88768 -14.83124 -14.61883 -14.52121 -14.23705 -14.11641 -13.65419 -13.50489 -13.43947 -12.82056 -12.64037 -12.45027 -12.26628 -12.18821 -11.92061 -11.77251 -11.39922 -11.35891 -11.14659 -11.05672 -10.96904 -10.82596 -10.62948 -10.06151 -9.89534 -9.57946 -9.27571 -9.15099 -8.52454 -8.46297 -8.45089 -6.11437 -4.14394 0.95926 1.20418 1.36975 2.37442 2.95169 3.03949 3.25434 3.33605 3.37387 3.39154 3.78224 4.13367 4.37903 4.45572 4.50275 4.72257 4.78167 4.79347 4.85688 5.00655 5.08056 5.10176 5.17493 5.25190 5.26129 5.37088 5.45310 5.51087 5.61825 5.75481 5.87984 6.00909 6.10435 6.17334 6.29051 6.33875 6.42399 6.46268 6.77905 7.09873 7.21732 7.44610 7.56668 7.63605 7.85625 8.27005 8.34542 8.91342 9.50778 10.99531 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029866 B = 0.002140 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.309350 B =13080.430717 C =13123.277782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.124 3.876 4 C -0.206 4.206 5 C -0.081 4.081 6 C -0.137 4.137 7 C -0.047 4.047 8 C 0.014 3.986 9 C 0.171 3.829 10 N -0.387 5.387 11 O 0.078 5.922 12 C 0.216 3.784 13 C 0.180 3.820 14 H 0.122 0.878 15 N -0.840 5.840 16 C -0.143 4.143 17 C 0.025 3.975 18 C -0.524 4.524 19 H 0.056 0.944 20 C 0.058 3.942 21 N -0.892 5.892 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 N -0.484 5.484 27 C -0.138 4.138 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.344 0.656 37 H 0.366 0.634 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.022 0.978 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.702 -9.269 -15.778 26.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.079 3.921 4 C -0.225 4.225 5 C -0.099 4.099 6 C -0.155 4.155 7 C -0.048 4.048 8 C -0.025 4.025 9 C -0.102 4.102 10 N -0.096 5.096 11 O 0.020 5.980 12 C -0.005 4.005 13 C 0.067 3.933 14 H 0.140 0.860 15 N -0.374 5.374 16 C -0.183 4.183 17 C -0.012 4.012 18 C -0.562 4.562 19 H 0.074 0.926 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.209 1.209 26 N -0.217 5.217 27 C -0.156 4.156 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.157 0.843 37 H 0.183 0.817 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.496 -9.765 -16.582 27.394 hybrid contribution 1.771 0.249 0.684 1.914 sum -17.726 -9.516 -15.898 25.642 Atomic orbital electron populations 1.23057 0.78380 1.03967 1.01340 1.86077 1.21383 1.26904 1.88782 1.18944 0.92164 0.84221 0.96759 1.21262 1.00014 0.92456 1.08784 1.20938 0.94508 0.97059 0.97358 1.21046 0.93755 0.98243 1.02439 1.19339 0.94093 0.92675 0.98690 1.18833 0.91056 1.05686 0.86884 1.25444 1.00884 0.84109 0.99771 1.74586 1.17996 1.23893 0.93106 1.85255 1.61057 1.24818 1.26824 1.29066 0.92992 0.81814 0.96640 1.20222 0.95765 0.94742 0.82612 0.85992 1.58974 1.64794 1.07880 1.05708 1.22538 0.90731 1.02283 1.02748 1.19108 0.96861 0.93739 0.91525 1.21183 0.91653 1.26471 1.16879 0.92566 1.25010 0.98310 0.95346 0.95658 1.69953 1.35062 1.28135 1.19952 0.86515 0.85542 0.77881 0.77964 1.19742 1.20932 1.20931 1.71846 1.18993 1.28754 1.02146 1.20307 0.91481 0.98187 1.05667 0.92668 0.88208 0.92613 0.85486 0.85486 0.85220 0.88034 0.87340 0.84344 0.81682 0.92206 0.91964 0.95985 0.96189 0.92885 0.85054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.36 10.50 -19.41 -0.20 -3.56 16 3 C 0.12 1.39 6.69 -39.22 -0.26 1.13 16 4 C -0.21 -1.99 9.04 -39.43 -0.36 -2.35 16 5 C -0.08 -0.77 10.04 -39.61 -0.40 -1.17 16 6 C -0.14 -1.46 9.70 -39.56 -0.38 -1.84 16 7 C -0.05 -0.53 5.11 -104.65 -0.54 -1.07 16 8 C 0.01 0.16 5.97 -29.03 -0.17 -0.02 16 9 C 0.17 2.58 7.45 -156.37 -1.17 1.41 16 10 N -0.39 -6.33 12.16 30.90 0.38 -5.96 16 11 O 0.08 1.30 11.29 18.11 0.20 1.50 16 12 C 0.22 3.57 7.32 -13.06 -0.10 3.48 16 13 C 0.18 2.93 3.35 -68.86 -0.23 2.70 16 14 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 15 N -0.84 -12.54 9.17 -5.65 -0.05 -12.59 16 16 C -0.14 -2.69 4.78 -26.73 -0.13 -2.82 16 17 C 0.02 0.58 4.74 -27.89 -0.13 0.45 16 18 C -0.52 -14.07 9.11 -34.44 -0.31 -14.38 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -25.53 13.29 55.43 0.74 -24.80 16 22 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 N -0.48 -7.98 11.55 -9.87 -0.11 -8.09 16 27 C -0.14 -1.62 9.64 -39.43 -0.38 -2.00 16 28 H 0.05 0.27 7.68 -51.93 -0.40 -0.12 16 29 H 0.10 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.06 0.31 7.65 -51.93 -0.40 -0.08 16 31 H 0.13 0.91 6.30 -52.49 -0.33 0.58 16 32 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 34 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 35 H 0.11 1.03 8.08 -51.93 -0.42 0.61 16 36 H 0.34 4.80 8.98 -39.29 -0.35 4.45 16 37 H 0.37 5.49 7.55 -39.29 -0.30 5.19 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.02 0.47 6.87 -51.93 -0.36 0.11 16 42 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -31.34 369.14 -8.07 -39.40 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.90 Total: 6.31 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -3.66 Total: -13.80 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.95 Total: -51.44 kcal Atomic # 8 Polarization: -2.06 SS G_CDS: 0.00 Total: -2.06 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.34 -8.07 -39.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822722656.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.384 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds