Wall clock time and date at job start Tue Mar 31 2020 11:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 C 1.50696 * 119.97662 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47356 * 89.99617 * 8 7 6 10 10 N 1.29951 * 126.28276 * 90.02587 * 9 8 7 11 11 O 1.21301 * 110.24323 * 179.97438 * 10 9 8 12 12 C 1.33638 * 109.81477 * 359.97438 * 11 10 9 13 13 C 1.50701 * 126.55170 * 179.97438 * 12 11 10 14 14 H 1.08994 * 109.47311 * 194.97553 * 13 12 11 15 15 N 1.46901 * 109.47274 * 314.98180 * 13 12 11 16 16 C 1.53005 * 109.46777 * 74.97885 * 13 12 11 17 17 C 1.53000 * 109.47258 * 175.00045 * 16 13 12 18 18 C 1.50695 * 109.47170 * 179.97438 * 17 16 13 19 19 H 1.07996 * 120.00245 * 0.02562 * 18 17 16 20 20 C 1.37885 * 120.00061 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99463 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00183 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46990 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47031 * 119.99942 * 22 20 18 25 25 H 1.48500 * 109.47231 * 240.00506 * 22 20 18 26 26 N 1.31128 * 106.89911 * 359.76755 * 12 11 10 27 27 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 28 28 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 29 29 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 31 31 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 33 33 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 34 34 H 1.09005 * 109.47005 * 209.99445 * 8 7 6 35 35 H 1.08997 * 109.46936 * 329.99322 * 8 7 6 36 36 H 1.00898 * 111.00019 * 59.99816 * 15 13 12 37 37 H 1.00905 * 110.99519 * 183.95021 * 15 13 12 38 38 H 1.08996 * 109.47322 * 294.99982 * 16 13 12 39 39 H 1.08999 * 109.47293 * 55.00296 * 16 13 12 40 40 H 1.09005 * 109.46932 * 300.00357 * 17 16 13 41 41 H 1.08998 * 109.46980 * 59.99420 * 17 16 13 42 42 H 0.97006 * 119.99678 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.02798 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 6 5.5607 2.5982 0.0005 9 6 6.0624 2.6240 1.4214 10 7 6.3751 1.5912 2.1454 11 8 6.7455 1.9459 3.2447 12 6 6.7034 3.2789 3.3286 13 6 7.0812 4.1153 4.5240 14 1 6.6989 5.1278 4.3945 15 7 6.5020 3.5245 5.7378 16 6 8.6051 4.1586 4.6549 17 6 8.9926 5.1070 5.7912 18 6 10.4934 5.1491 5.9206 19 1 11.1093 4.5588 5.2584 20 6 11.0804 5.9420 6.8839 21 7 10.3304 6.6612 7.6900 22 14 12.9408 5.9948 7.0438 23 1 13.5506 5.1022 6.0255 24 1 13.4166 7.3853 6.8312 25 1 13.3340 5.5390 8.4013 26 7 6.2748 3.7204 2.1707 27 6 3.4311 1.2848 0.0003 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2128 2.3203 0.0108 32 1 1.3339 4.5114 0.0034 33 1 3.7922 4.6381 0.0022 34 1 5.9714 1.7294 -0.5140 35 1 5.8757 3.5068 -0.5126 36 1 6.8414 2.5850 5.8801 37 1 6.6869 4.1018 6.5445 38 1 8.9796 3.1584 4.8728 39 1 9.0401 4.5139 3.7208 40 1 8.6181 6.1072 5.5734 41 1 8.5575 4.7517 6.7253 42 1 10.7433 7.2188 8.3679 43 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822722656.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:35 Heat of formation + Delta-G solvation = 18.859657 kcal Electronic energy + Delta-G solvation = -25142.162661 eV Core-core repulsion = 21382.520414 eV Total energy + Delta-G solvation = -3759.642247 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.63203 -41.15559 -38.83249 -38.26694 -36.98704 -35.14998 -34.10416 -32.53986 -31.73066 -31.48191 -28.78736 -28.24482 -27.96330 -25.94984 -24.67414 -23.53266 -23.15375 -22.20765 -21.29831 -19.21627 -18.91673 -18.58447 -18.24458 -17.45048 -17.20047 -16.95131 -16.69816 -16.45706 -16.01418 -15.46334 -15.39389 -15.09519 -14.96751 -14.70582 -14.41931 -14.17885 -13.94189 -13.47242 -13.40326 -13.14471 -13.07001 -12.95617 -12.76755 -12.69013 -12.50318 -12.37741 -12.09991 -12.00641 -11.84895 -11.79584 -11.53889 -11.30184 -10.98788 -10.54799 -9.94468 -9.83562 -9.23025 -8.20471 -6.29779 0.03451 0.21912 0.41858 1.16803 1.39921 1.42043 1.53254 1.74363 2.31309 2.40136 2.45277 2.73164 3.05959 3.13856 3.64105 3.67576 3.77888 3.84432 4.01925 4.09857 4.19205 4.20602 4.31331 4.33046 4.36568 4.46625 4.48822 4.64622 4.69783 4.72217 4.75481 4.82279 4.90962 5.02031 5.06860 5.25461 5.41262 5.48490 5.54478 5.66766 5.72961 5.81811 5.95710 6.22237 6.40044 6.41082 6.85332 7.09073 7.39068 8.90473 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029866 B = 0.002140 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.309350 B =13080.430717 C =13123.277782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.111 3.889 4 C -0.206 4.206 5 C -0.082 4.082 6 C -0.148 4.148 7 C -0.056 4.056 8 C 0.014 3.986 9 C 0.176 3.824 10 N -0.402 5.402 11 O 0.070 5.930 12 C 0.211 3.789 13 C 0.194 3.806 14 H 0.123 0.877 15 N -0.834 5.834 16 C -0.127 4.127 17 C 0.030 3.970 18 C -0.543 4.543 19 H 0.054 0.946 20 C 0.006 3.994 21 N -0.925 5.925 22 Si 0.957 3.043 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.278 1.278 26 N -0.493 5.493 27 C -0.157 4.157 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.062 0.938 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.137 0.863 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.351 0.649 37 H 0.366 0.634 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.001 0.999 41 H 0.015 0.985 42 H 0.264 0.736 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.462 -9.427 -16.655 27.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.066 3.934 4 C -0.225 4.225 5 C -0.100 4.100 6 C -0.167 4.167 7 C -0.057 4.057 8 C -0.024 4.024 9 C -0.097 4.097 10 N -0.112 5.112 11 O 0.015 5.985 12 C -0.010 4.010 13 C 0.080 3.920 14 H 0.140 0.860 15 N -0.368 5.368 16 C -0.167 4.167 17 C -0.007 4.007 18 C -0.581 4.581 19 H 0.073 0.927 20 C -0.193 4.193 21 N -0.564 5.564 22 Si 0.783 3.217 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.204 1.204 26 N -0.227 5.227 27 C -0.176 4.176 28 H 0.088 0.912 29 H 0.136 0.864 30 H 0.081 0.919 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.155 0.845 34 H 0.134 0.866 35 H 0.144 0.856 36 H 0.164 0.836 37 H 0.184 0.816 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.020 0.980 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -20.260 -9.941 -17.452 28.528 hybrid contribution 1.900 0.265 0.918 2.127 sum -18.360 -9.676 -16.534 26.534 Atomic orbital electron populations 1.23354 0.76304 1.05606 1.02336 1.86049 1.23634 1.26909 1.88755 1.19137 0.92256 0.85062 0.96913 1.21570 1.01294 0.91897 1.07723 1.21285 0.94345 0.98100 0.96243 1.21260 0.94502 0.98277 1.02613 1.19370 0.94057 0.92899 0.99418 1.19056 0.91196 1.07317 0.84859 1.26096 0.99480 0.83244 1.00836 1.74586 1.18948 1.24475 0.93235 1.85240 1.61359 1.24725 1.27187 1.28992 0.93353 0.81962 0.96698 1.19946 0.93801 0.95012 0.83261 0.85960 1.58964 1.64358 1.08226 1.05248 1.22281 0.92792 1.01081 1.00582 1.18968 0.95168 0.93656 0.92911 1.21624 0.93538 1.26261 1.16722 0.92737 1.25829 1.02845 0.95116 0.95477 1.70054 1.36890 1.28900 1.20606 0.85512 0.80180 0.77945 0.78092 1.19128 1.20567 1.20375 1.71864 1.19192 1.29409 1.02257 1.20413 0.92183 0.98222 1.06804 0.91236 0.86427 0.91937 0.83044 0.82969 0.84523 0.86565 0.85578 0.83562 0.81646 0.91866 0.92579 0.98044 0.96677 0.92723 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.90 10.50 -92.38 -0.97 -7.87 16 3 C 0.11 2.40 6.69 22.51 0.15 2.55 16 4 C -0.21 -3.59 9.04 22.37 0.20 -3.39 16 5 C -0.08 -1.40 10.04 22.25 0.22 -1.18 16 6 C -0.15 -2.96 9.70 22.28 0.22 -2.75 16 7 C -0.06 -1.24 5.11 -19.88 -0.10 -1.34 16 8 C 0.01 0.30 5.97 29.10 0.17 0.47 16 9 C 0.18 5.18 7.45 138.46 1.03 6.21 16 10 N -0.40 -12.96 12.16 -60.33 -0.73 -13.70 16 11 O 0.07 2.29 11.29 74.88 0.85 3.14 16 12 C 0.21 6.87 7.32 88.38 0.65 7.52 16 13 C 0.19 6.22 3.35 44.17 0.15 6.37 16 14 H 0.12 3.95 8.14 -2.39 -0.02 3.94 16 15 N -0.83 -24.42 9.17 -171.80 -1.58 -25.99 16 16 C -0.13 -4.77 4.78 30.60 0.15 -4.63 16 17 C 0.03 1.43 4.74 29.85 0.14 1.57 16 18 C -0.54 -29.26 9.11 25.60 0.23 -29.03 16 19 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 20 C 0.01 0.33 5.46 84.66 0.46 0.79 16 21 N -0.92 -53.22 13.29 21.45 0.28 -52.93 16 22 Si 0.96 42.99 29.54 68.60 2.03 45.02 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 26 N -0.49 -15.87 11.55 -303.22 -3.50 -19.37 16 27 C -0.16 -3.66 9.64 22.37 0.22 -3.45 16 28 H 0.07 0.54 7.68 -2.39 -0.02 0.52 16 29 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.06 0.58 7.65 -2.39 -0.02 0.56 16 31 H 0.15 1.76 6.30 -2.91 -0.02 1.75 16 32 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.12 2.09 8.09 -2.38 -0.02 2.07 16 35 H 0.13 2.19 8.08 -2.39 -0.02 2.17 16 36 H 0.35 9.55 8.98 -89.70 -0.81 8.74 16 37 H 0.37 10.86 7.55 -89.69 -0.68 10.18 16 38 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 41 H 0.01 0.72 6.87 -2.39 -0.02 0.70 16 42 H 0.26 14.34 8.31 -92.70 -0.77 13.57 16 43 H 0.13 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -66.27 369.14 0.95 -65.32 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -0.43 Total: 25.35 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 5.00 Total: -18.96 kcal Atomic # 7 Polarization: -106.47 SS G_CDS: -5.53 Total: -112.00 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.12 Total: -4.73 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -66.27 0.95 -65.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822722656.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.182 kcal (2) G-P(sol) polarization free energy of solvation -66.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds