Wall clock time and date at job start Tue Mar 31 2020 11:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00014 * 2 1 4 4 C 1.50703 * 109.47498 * 180.02562 * 3 2 1 5 5 C 1.38046 * 120.05702 * 0.25076 * 4 3 2 6 6 C 1.38299 * 120.11651 * 180.30398 * 5 4 3 7 7 C 1.38345 * 120.24164 * 359.71788 * 6 5 4 8 8 C 1.37999 * 120.12025 * 0.02562 * 7 6 5 9 9 C 1.39306 * 120.06353 * 180.02562 * 4 3 2 10 10 C 1.48418 * 120.11911 * 359.96856 * 9 4 3 11 11 N 1.30766 * 126.41582 * 359.75830 * 10 9 4 12 12 O 1.21293 * 110.09992 * 179.97438 * 11 10 9 13 13 C 1.33666 * 110.02655 * 359.97438 * 12 11 10 14 14 C 1.50700 * 126.43874 * 180.26666 * 13 12 11 15 15 H 1.09002 * 109.46998 * 164.68766 * 14 13 12 16 16 N 1.46904 * 109.47006 * 44.68621 * 14 13 12 17 17 C 1.53006 * 109.46929 * 284.68859 * 14 13 12 18 18 C 1.52995 * 109.46753 * 184.99952 * 17 14 13 19 19 C 1.50708 * 109.46942 * 179.97438 * 18 17 14 20 20 H 1.07996 * 119.99593 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99699 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00611 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99710 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46906 * 59.99990 * 23 21 19 25 25 H 1.48499 * 109.47448 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47072 * 300.00502 * 23 21 19 27 27 N 1.30984 * 107.12172 * 0.02562 * 13 12 11 28 28 H 1.09002 * 109.47461 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47263 * 300.00385 * 1 2 3 30 30 H 1.09004 * 109.47275 * 60.00250 * 1 2 3 31 31 H 1.08995 * 109.47568 * 59.99732 * 3 2 1 32 32 H 1.09004 * 109.47076 * 300.00280 * 3 2 1 33 33 H 1.08001 * 119.94293 * 0.02562 * 5 4 3 34 34 H 1.08007 * 119.87671 * 179.74599 * 6 5 4 35 35 H 1.07999 * 119.93441 * 180.02562 * 7 6 5 36 36 H 1.08001 * 120.05737 * 180.02562 * 8 7 6 37 37 H 1.00900 * 110.99967 * 300.00025 * 16 14 13 38 38 H 1.00903 * 110.99597 * 63.95399 * 16 14 13 39 39 H 1.08997 * 109.46820 * 304.99505 * 17 14 13 40 40 H 1.08993 * 109.46925 * 64.99824 * 17 14 13 41 41 H 1.08997 * 109.47576 * 299.99605 * 18 17 14 42 42 H 1.09006 * 109.47443 * 60.00403 * 18 17 14 43 43 H 0.96994 * 120.00492 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1075 -0.0591 -0.0063 6 6 5.4861 -0.1697 -0.0006 7 6 6.2761 0.9659 0.0050 8 6 5.6918 2.2161 0.0054 9 6 4.3033 2.3334 -0.0002 10 6 3.6692 3.6753 0.0002 11 7 2.3862 3.9275 -0.0043 12 8 2.1969 5.1256 -0.0020 13 6 3.3659 5.7737 0.0049 14 6 3.5609 7.2680 0.0153 15 1 4.5902 7.4981 0.2905 16 7 2.6457 7.8744 0.9914 17 6 3.2672 7.8303 -1.3770 18 6 3.5847 9.3268 -1.3999 19 6 3.2961 9.8806 -2.7715 20 1 2.9230 9.2303 -3.5488 21 6 3.5072 11.2177 -3.0335 22 7 3.9610 12.0097 -2.0867 23 14 3.1501 11.9040 -4.7337 24 1 1.7163 11.6965 -5.0601 25 1 3.4581 13.3566 -4.7560 26 1 3.9924 11.2044 -5.7369 27 7 4.3101 4.8659 0.0061 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.4954 -0.9489 -0.0108 34 1 5.9475 -1.1462 -0.0009 35 1 7.3522 0.8738 0.0091 36 1 6.3096 3.1020 0.0094 37 1 1.6845 7.6752 0.7581 38 1 2.8615 7.5679 1.9282 39 1 3.8846 7.3166 -2.1139 40 1 2.2146 7.6785 -1.6155 41 1 2.9675 9.8406 -0.6630 42 1 4.6375 9.4786 -1.1614 43 1 4.1091 12.9504 -2.2709 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822739481.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:39 Heat of formation + Delta-G solvation = 41.396943 kcal Electronic energy + Delta-G solvation = -25532.241120 eV Core-core repulsion = 21773.576163 eV Total energy + Delta-G solvation = -3758.664957 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.53830 -39.86766 -37.84382 -36.79109 -35.75199 -33.29824 -32.75917 -31.73251 -30.69814 -30.29577 -27.66332 -26.62261 -25.76476 -24.83368 -24.05708 -22.52551 -21.96486 -20.88116 -20.01676 -18.05672 -17.85311 -16.99258 -16.69937 -16.23759 -16.16937 -16.01426 -15.70180 -15.18246 -14.77475 -14.61963 -14.35187 -14.08823 -13.87026 -13.72950 -13.06799 -12.60567 -12.58327 -12.48524 -12.12465 -11.93861 -11.83664 -11.69692 -11.44781 -11.34751 -11.03266 -10.90751 -10.86289 -10.61474 -10.34961 -10.11497 -9.87529 -9.45461 -9.08672 -9.02840 -8.90013 -8.82537 -8.29910 -5.96867 -3.99274 0.48625 1.07303 1.30301 2.37265 2.79941 3.34986 3.35059 3.37920 3.39670 3.42251 3.51926 3.88136 4.47518 4.49162 4.64547 4.70529 4.75307 4.93439 4.97137 5.02499 5.11353 5.21093 5.24872 5.29843 5.35655 5.36372 5.39435 5.51334 5.58193 5.71968 5.79539 5.86352 6.12484 6.18132 6.22141 6.36400 6.52837 6.61129 6.82201 6.96774 7.11519 7.46281 7.71944 7.89493 8.06694 8.09517 8.43451 9.07750 9.64128 11.14020 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.002534 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.622283 B =11046.366489 C =11506.362697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.105 3.895 4 C -0.057 4.057 5 C -0.103 4.103 6 C -0.103 4.103 7 C -0.124 4.124 8 C -0.072 4.072 9 C -0.017 4.017 10 C 0.207 3.793 11 N -0.387 5.387 12 O 0.074 5.926 13 C 0.169 3.831 14 C 0.185 3.815 15 H 0.126 0.874 16 N -0.812 5.812 17 C -0.102 4.102 18 C 0.032 3.968 19 C -0.524 4.524 20 H 0.052 0.948 21 C 0.059 3.941 22 N -0.892 5.892 23 Si 0.890 3.110 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.278 1.278 27 N -0.477 5.477 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.139 0.861 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.139 0.861 37 H 0.349 0.651 38 H 0.340 0.660 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.037 0.963 42 H 0.016 0.984 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.427 -24.337 7.847 25.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.311 6.311 3 C 0.029 3.971 4 C -0.059 4.059 5 C -0.121 4.121 6 C -0.122 4.122 7 C -0.142 4.142 8 C -0.092 4.092 9 C -0.019 4.019 10 C -0.062 4.062 11 N -0.096 5.096 12 O 0.017 5.983 13 C -0.055 4.055 14 C 0.070 3.930 15 H 0.144 0.856 16 N -0.340 5.340 17 C -0.141 4.141 18 C -0.005 4.005 19 C -0.563 4.563 20 H 0.070 0.930 21 C -0.142 4.142 22 N -0.531 5.531 23 Si 0.718 3.282 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 N -0.210 5.210 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.157 0.843 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.157 0.843 37 H 0.163 0.837 38 H 0.153 0.847 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.034 0.966 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.193 -24.323 7.656 25.527 hybrid contribution -0.681 -0.161 -0.798 1.061 sum -1.874 -24.484 6.858 25.495 Atomic orbital electron populations 1.22741 0.80423 1.02762 1.00407 1.87773 1.20122 1.27568 1.95618 1.21330 0.89361 0.84417 1.01958 1.19691 0.94345 0.92712 0.99119 1.20927 0.94611 0.97053 0.99471 1.21364 0.93677 0.98913 0.98208 1.21155 1.00374 0.91901 1.00791 1.21193 0.92669 0.98707 0.96660 1.17082 0.93036 0.85895 1.05907 1.23939 0.86314 0.94523 1.01426 1.74890 1.18369 0.94325 1.22059 1.85233 1.34695 1.12706 1.65715 1.31225 0.79162 1.01672 0.93398 1.20909 1.00110 0.74363 0.97663 0.85626 1.58816 1.07460 1.63071 1.04668 1.21852 1.01140 1.01397 0.89677 1.19013 0.97393 0.86787 0.97278 1.21203 1.44067 0.93965 0.97036 0.92967 1.24974 0.95318 0.97158 0.96768 1.69950 1.45508 1.05182 1.32472 0.86703 0.78761 0.77895 0.84881 1.20298 1.21300 1.20341 1.72017 1.30795 0.97418 1.20754 0.89425 0.93890 0.93798 0.91178 0.91059 0.84344 0.85381 0.85098 0.84321 0.83662 0.84669 0.92274 0.92387 0.94443 0.96558 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.30 9.18 -35.23 -0.32 -4.62 16 3 C 0.11 1.26 4.60 36.01 0.17 1.43 16 4 C -0.06 -0.70 5.91 -104.29 -0.62 -1.31 16 5 C -0.10 -1.07 9.37 -39.63 -0.37 -1.44 16 6 C -0.10 -0.90 10.04 -39.52 -0.40 -1.30 16 7 C -0.12 -1.14 10.03 -39.63 -0.40 -1.54 16 8 C -0.07 -0.84 9.70 -39.26 -0.38 -1.22 16 9 C -0.02 -0.23 5.88 -104.90 -0.62 -0.85 16 10 C 0.21 3.15 7.70 -156.12 -1.20 1.95 16 11 N -0.39 -5.81 9.05 30.97 0.28 -5.53 16 12 O 0.07 1.10 11.27 18.04 0.20 1.30 16 13 C 0.17 2.55 7.29 -12.98 -0.09 2.46 16 14 C 0.18 2.85 3.29 -68.86 -0.23 2.62 16 15 H 0.13 1.95 8.14 -51.93 -0.42 1.53 16 16 N -0.81 -11.20 8.68 -5.65 -0.05 -11.25 16 17 C -0.10 -1.95 4.78 -26.73 -0.13 -2.08 16 18 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 19 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 20 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 23 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 27 N -0.48 -7.55 11.26 -9.88 -0.11 -7.66 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.87 7.43 -51.93 -0.39 0.48 16 32 H 0.07 0.91 7.42 -51.93 -0.39 0.53 16 33 H 0.14 1.31 7.00 -52.49 -0.37 0.94 16 34 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 35 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.14 1.58 7.88 -52.49 -0.41 1.17 16 37 H 0.35 4.45 8.97 -39.29 -0.35 4.09 16 38 H 0.34 3.84 9.06 -39.29 -0.36 3.49 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 367.29 15.07 5.54 5.54 Total: -1.00 -31.45 367.29 -8.46 -39.91 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.01 Total: 4.01 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -3.70 Total: -12.47 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.86 Total: -50.12 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: -0.12 Total: -3.32 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.45 -8.46 -39.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822739481.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.305 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds