Wall clock time and date at job start Tue Mar 31 2020 11:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00014 * 2 1 4 4 C 1.50703 * 109.47498 * 180.02562 * 3 2 1 5 5 C 1.38046 * 120.05702 * 0.25076 * 4 3 2 6 6 C 1.38299 * 120.11651 * 180.30398 * 5 4 3 7 7 C 1.38345 * 120.24164 * 359.71788 * 6 5 4 8 8 C 1.37999 * 120.12025 * 0.02562 * 7 6 5 9 9 C 1.39306 * 120.06353 * 180.02562 * 4 3 2 10 10 C 1.48418 * 120.11911 * 359.96856 * 9 4 3 11 11 N 1.30766 * 126.41582 * 359.75830 * 10 9 4 12 12 O 1.21293 * 110.09992 * 179.97438 * 11 10 9 13 13 C 1.33666 * 110.02655 * 359.97438 * 12 11 10 14 14 C 1.50700 * 126.43874 * 180.26666 * 13 12 11 15 15 H 1.09002 * 109.46998 * 164.68766 * 14 13 12 16 16 N 1.46904 * 109.47006 * 44.68621 * 14 13 12 17 17 C 1.53006 * 109.46929 * 284.68859 * 14 13 12 18 18 C 1.52995 * 109.46753 * 184.99952 * 17 14 13 19 19 C 1.50708 * 109.46942 * 179.97438 * 18 17 14 20 20 H 1.07996 * 119.99593 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99699 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00611 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99710 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46906 * 59.99990 * 23 21 19 25 25 H 1.48499 * 109.47448 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47072 * 300.00502 * 23 21 19 27 27 N 1.30984 * 107.12172 * 0.02562 * 13 12 11 28 28 H 1.09002 * 109.47461 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47263 * 300.00385 * 1 2 3 30 30 H 1.09004 * 109.47275 * 60.00250 * 1 2 3 31 31 H 1.08995 * 109.47568 * 59.99732 * 3 2 1 32 32 H 1.09004 * 109.47076 * 300.00280 * 3 2 1 33 33 H 1.08001 * 119.94293 * 0.02562 * 5 4 3 34 34 H 1.08007 * 119.87671 * 179.74599 * 6 5 4 35 35 H 1.07999 * 119.93441 * 180.02562 * 7 6 5 36 36 H 1.08001 * 120.05737 * 180.02562 * 8 7 6 37 37 H 1.00900 * 110.99967 * 300.00025 * 16 14 13 38 38 H 1.00903 * 110.99597 * 63.95399 * 16 14 13 39 39 H 1.08997 * 109.46820 * 304.99505 * 17 14 13 40 40 H 1.08993 * 109.46925 * 64.99824 * 17 14 13 41 41 H 1.08997 * 109.47576 * 299.99605 * 18 17 14 42 42 H 1.09006 * 109.47443 * 60.00403 * 18 17 14 43 43 H 0.96994 * 120.00492 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1075 -0.0591 -0.0063 6 6 5.4861 -0.1697 -0.0006 7 6 6.2761 0.9659 0.0050 8 6 5.6918 2.2161 0.0054 9 6 4.3033 2.3334 -0.0002 10 6 3.6692 3.6753 0.0002 11 7 2.3862 3.9275 -0.0043 12 8 2.1969 5.1256 -0.0020 13 6 3.3659 5.7737 0.0049 14 6 3.5609 7.2680 0.0153 15 1 4.5902 7.4981 0.2905 16 7 2.6457 7.8744 0.9914 17 6 3.2672 7.8303 -1.3770 18 6 3.5847 9.3268 -1.3999 19 6 3.2961 9.8806 -2.7715 20 1 2.9230 9.2303 -3.5488 21 6 3.5072 11.2177 -3.0335 22 7 3.9610 12.0097 -2.0867 23 14 3.1501 11.9040 -4.7337 24 1 1.7163 11.6965 -5.0601 25 1 3.4581 13.3566 -4.7560 26 1 3.9924 11.2044 -5.7369 27 7 4.3101 4.8659 0.0061 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.4954 -0.9489 -0.0108 34 1 5.9475 -1.1462 -0.0009 35 1 7.3522 0.8738 0.0091 36 1 6.3096 3.1020 0.0094 37 1 1.6845 7.6752 0.7581 38 1 2.8615 7.5679 1.9282 39 1 3.8846 7.3166 -2.1139 40 1 2.2146 7.6785 -1.6155 41 1 2.9675 9.8406 -0.6630 42 1 4.6375 9.4786 -1.1614 43 1 4.1091 12.9504 -2.2709 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822739481.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:38 Heat of formation + Delta-G solvation = 20.125424 kcal Electronic energy + Delta-G solvation = -25533.163522 eV Core-core repulsion = 21773.576163 eV Total energy + Delta-G solvation = -3759.587360 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.71580 -40.69939 -38.64942 -38.16476 -36.90196 -35.14876 -33.90412 -32.67792 -32.08415 -31.60282 -28.43288 -28.22475 -26.64809 -25.91223 -25.59971 -23.73235 -22.96866 -22.24344 -21.27973 -19.25267 -19.01141 -18.33748 -17.88600 -17.47643 -17.28049 -17.00007 -16.60944 -16.52770 -16.20857 -15.57762 -15.51052 -15.40123 -14.75503 -14.56860 -14.28907 -14.15054 -13.89629 -13.62714 -13.45478 -13.35424 -12.90613 -12.78328 -12.62968 -12.50639 -12.48611 -12.38143 -12.14918 -11.99901 -11.78080 -11.64573 -11.31318 -11.05667 -10.91929 -10.48359 -10.04155 -9.86836 -9.73525 -8.12874 -6.22490 -0.48212 0.15466 0.28854 1.29802 1.43304 1.45186 1.52853 1.59495 2.29971 2.45750 2.55865 2.68809 2.75697 3.20633 3.49611 3.63337 3.73217 3.93943 3.99392 4.08401 4.19556 4.23301 4.24464 4.33148 4.43719 4.46878 4.51897 4.53678 4.62460 4.76694 4.78832 4.84278 4.93295 4.99700 5.21955 5.33352 5.36066 5.44608 5.58603 5.83863 5.85736 5.97532 5.99703 6.02377 6.31044 6.45384 6.92331 6.95496 7.45366 8.98142 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.002534 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.622283 B =11046.366489 C =11506.362697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.114 3.886 4 C -0.072 4.072 5 C -0.107 4.107 6 C -0.090 4.090 7 C -0.118 4.118 8 C -0.083 4.083 9 C -0.047 4.047 10 C 0.204 3.796 11 N -0.393 5.393 12 O 0.074 5.926 13 C 0.171 3.829 14 C 0.201 3.799 15 H 0.126 0.874 16 N -0.817 5.817 17 C -0.089 4.089 18 C 0.040 3.960 19 C -0.545 4.545 20 H 0.055 0.945 21 C 0.004 3.996 22 N -0.928 5.928 23 Si 0.956 3.044 24 H -0.268 1.268 25 H -0.284 1.284 26 H -0.271 1.271 27 N -0.489 5.489 28 H 0.110 0.890 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.148 0.852 34 H 0.165 0.835 35 H 0.162 0.838 36 H 0.134 0.866 37 H 0.356 0.644 38 H 0.357 0.643 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.019 0.981 42 H -0.008 1.008 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.140 -26.452 7.454 27.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C 0.038 3.962 4 C -0.075 4.075 5 C -0.125 4.125 6 C -0.108 4.108 7 C -0.135 4.135 8 C -0.103 4.103 9 C -0.049 4.049 10 C -0.065 4.065 11 N -0.103 5.103 12 O 0.017 5.983 13 C -0.052 4.052 14 C 0.085 3.915 15 H 0.143 0.857 16 N -0.348 5.348 17 C -0.128 4.128 18 C 0.003 3.997 19 C -0.583 4.583 20 H 0.073 0.927 21 C -0.194 4.194 22 N -0.568 5.568 23 Si 0.782 3.218 24 H -0.193 1.193 25 H -0.209 1.209 26 H -0.196 1.196 27 N -0.222 5.222 28 H 0.128 0.872 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.166 0.834 34 H 0.182 0.818 35 H 0.180 0.820 36 H 0.152 0.848 37 H 0.171 0.829 38 H 0.172 0.828 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.037 0.963 42 H 0.011 0.989 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.927 -26.450 7.273 27.448 hybrid contribution -0.755 0.388 -0.638 1.062 sum -1.681 -26.062 6.635 26.946 Atomic orbital electron populations 1.22959 0.79009 1.04369 1.00661 1.87751 1.21691 1.26860 1.95611 1.21128 0.89673 0.84711 1.00735 1.19831 0.94393 0.93290 0.99946 1.21145 0.95706 0.96456 0.99163 1.21788 0.92895 1.00425 0.95708 1.21523 1.02020 0.90877 0.99122 1.21327 0.91975 0.99875 0.97137 1.17294 0.93999 0.85306 1.08261 1.24359 0.86276 0.95170 1.00727 1.74895 1.18542 0.94182 1.22643 1.85222 1.34495 1.12783 1.65772 1.30984 0.79335 1.01297 0.93611 1.20479 1.00448 0.74580 0.95962 0.85678 1.58775 1.07704 1.62976 1.05350 1.21552 1.01219 0.97965 0.92066 1.18815 0.95373 0.90047 0.95450 1.21687 1.43740 0.94467 0.98425 0.92693 1.25847 0.95140 0.97650 1.00760 1.70076 1.46616 1.05490 1.34620 0.85637 0.78972 0.77167 0.80071 1.19348 1.20910 1.19570 1.72007 1.31190 0.97895 1.21120 0.87155 0.93492 0.93718 0.92179 0.92541 0.83436 0.81765 0.82032 0.84780 0.82861 0.82835 0.92730 0.91936 0.96285 0.98929 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -8.50 9.18 -148.98 -1.37 -9.86 16 3 C 0.11 2.75 4.60 71.24 0.33 3.07 16 4 C -0.07 -1.75 5.91 -19.65 -0.12 -1.87 16 5 C -0.11 -2.02 9.37 22.24 0.21 -1.81 16 6 C -0.09 -1.28 10.04 22.31 0.22 -1.06 16 7 C -0.12 -1.84 10.03 22.24 0.22 -1.62 16 8 C -0.08 -1.86 9.70 22.48 0.22 -1.64 16 9 C -0.05 -1.24 5.88 -20.04 -0.12 -1.36 16 10 C 0.20 6.27 7.70 137.30 1.06 7.32 16 11 N -0.39 -11.97 9.05 -59.11 -0.54 -12.50 16 12 O 0.07 2.20 11.27 74.63 0.84 3.04 16 13 C 0.17 5.19 7.29 88.36 0.64 5.84 16 14 C 0.20 6.23 3.29 44.17 0.15 6.37 16 15 H 0.13 3.93 8.14 -2.39 -0.02 3.91 16 16 N -0.82 -22.40 8.68 -171.78 -1.49 -23.89 16 17 C -0.09 -3.45 4.78 30.59 0.15 -3.30 16 18 C 0.04 2.03 4.86 29.85 0.15 2.17 16 19 C -0.55 -30.44 9.11 25.60 0.23 -30.21 16 20 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 21 C 0.00 0.24 5.46 84.66 0.46 0.70 16 22 N -0.93 -55.76 13.29 21.45 0.28 -55.47 16 23 Si 0.96 44.08 29.54 68.60 2.03 46.10 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 27 N -0.49 -15.59 11.26 -302.48 -3.41 -18.99 16 28 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 1.53 7.43 -2.39 -0.02 1.51 16 32 H 0.06 1.50 7.42 -2.38 -0.02 1.48 16 33 H 0.15 2.48 7.00 -2.91 -0.02 2.46 16 34 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 35 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 36 H 0.13 3.02 7.88 -2.91 -0.02 3.00 16 37 H 0.36 8.94 8.97 -89.69 -0.80 8.13 16 38 H 0.36 7.84 9.06 -89.69 -0.81 7.03 16 39 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.06 2.34 8.14 -2.39 -0.02 2.33 16 41 H 0.02 1.01 7.75 -2.39 -0.02 0.99 16 42 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 43 H 0.26 14.91 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -68.21 367.29 0.83 -67.37 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -0.57 Total: 19.96 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 5.05 Total: -15.76 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -5.15 Total: -110.86 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.53 Total: -6.82 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -68.21 0.83 -67.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822739481.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.500 kcal (2) G-P(sol) polarization free energy of solvation -68.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds