Wall clock time and date at job start Tue Mar 31 2020 11:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00452 * 2 1 4 4 C 1.50697 * 109.47275 * 179.97438 * 3 2 1 5 5 C 1.38042 * 120.06134 * 0.29787 * 4 3 2 6 6 C 1.38306 * 120.12091 * 180.30181 * 5 4 3 7 7 C 1.38341 * 120.23883 * 359.67859 * 6 5 4 8 8 C 1.38002 * 120.12091 * 0.02562 * 7 6 5 9 9 C 1.39303 * 120.06163 * 180.02562 * 4 3 2 10 10 C 1.48424 * 120.11948 * 359.97438 * 9 4 3 11 11 N 1.30755 * 126.41328 * 359.70539 * 10 9 4 12 12 O 1.21294 * 110.09695 * 180.02562 * 11 10 9 13 13 C 1.33665 * 110.02827 * 359.97438 * 12 11 10 14 14 C 1.50698 * 126.43725 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.46862 * 195.02211 * 14 13 12 16 16 N 1.46901 * 109.47246 * 315.02325 * 14 13 12 17 17 C 1.53006 * 109.46914 * 75.02263 * 14 13 12 18 18 C 1.52999 * 109.46626 * 174.99639 * 17 14 13 19 19 C 1.50706 * 109.46957 * 180.02562 * 18 17 14 20 20 H 1.07999 * 119.99816 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00340 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00296 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99310 * 23 21 19 25 25 H 1.48494 * 109.47201 * 209.99478 * 23 21 19 26 26 H 1.48498 * 109.47011 * 329.99452 * 23 21 19 27 27 N 1.30979 * 107.12240 * 0.26214 * 13 12 11 28 28 H 1.09001 * 109.46999 * 59.99560 * 1 2 3 29 29 H 1.08998 * 109.47774 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47007 * 300.00556 * 1 2 3 31 31 H 1.09002 * 109.46904 * 59.99919 * 3 2 1 32 32 H 1.09000 * 109.47314 * 300.00101 * 3 2 1 33 33 H 1.08000 * 119.94238 * 359.97438 * 5 4 3 34 34 H 1.07997 * 119.87867 * 179.69870 * 6 5 4 35 35 H 1.08001 * 119.93718 * 180.02562 * 7 6 5 36 36 H 1.07995 * 120.06001 * 180.02562 * 8 7 6 37 37 H 1.00893 * 110.99780 * 296.04661 * 16 14 13 38 38 H 1.00906 * 110.99754 * 59.99985 * 16 14 13 39 39 H 1.08993 * 109.46955 * 295.00111 * 17 14 13 40 40 H 1.09000 * 109.47050 * 54.99940 * 17 14 13 41 41 H 1.08993 * 109.47839 * 299.99931 * 18 17 14 42 42 H 1.09000 * 109.47160 * 60.00369 * 18 17 14 43 43 H 0.97000 * 120.00540 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1863 0.0006 5 6 4.1075 -0.0593 -0.0051 6 6 5.4861 -0.1701 0.0018 7 6 6.2762 0.9655 0.0077 8 6 5.6920 2.2157 0.0074 9 6 4.3034 2.3330 0.0013 10 6 3.6694 3.6751 0.0008 11 7 2.3865 3.9274 -0.0057 12 8 2.1973 5.1255 -0.0046 13 6 3.3664 5.7735 0.0034 14 6 3.5615 7.2678 0.0079 15 1 4.5942 7.5001 -0.2522 16 7 2.6589 7.8824 -0.9748 17 6 3.2500 7.8186 1.4009 18 6 3.5673 9.3148 1.4403 19 6 3.2611 9.8573 2.8125 20 1 2.8789 9.2005 3.5799 21 6 3.4689 11.1921 3.0884 22 7 3.9348 11.9919 2.1540 23 14 3.0901 11.8644 4.7895 24 1 4.2986 11.7549 5.6455 25 1 2.6883 13.2898 4.6803 26 1 1.9821 11.0829 5.3952 27 7 4.3105 4.8656 0.0015 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.4953 -0.9491 -0.0096 34 1 5.9474 -1.1466 0.0022 35 1 7.3523 0.8733 0.0127 36 1 6.3097 3.1015 0.0116 37 1 2.8866 7.5837 -1.9112 38 1 1.6947 7.6813 -0.7554 39 1 2.1944 7.6649 1.6247 40 1 3.8578 7.2987 2.1414 41 1 4.6228 9.4685 1.2165 42 1 2.9594 9.8347 0.6997 43 1 4.0814 12.9309 2.3481 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822739482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:42 Heat of formation + Delta-G solvation = 41.359519 kcal Electronic energy + Delta-G solvation = -25533.961762 eV Core-core repulsion = 21775.295182 eV Total energy + Delta-G solvation = -3758.666580 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.53872 -39.86733 -37.84296 -36.79168 -35.75145 -33.29953 -32.75973 -31.73244 -30.69816 -30.29639 -27.66292 -26.62338 -25.76438 -24.83389 -24.05797 -22.52593 -21.96514 -20.88270 -20.01618 -18.05662 -17.85305 -16.99215 -16.69937 -16.24013 -16.16829 -16.01457 -15.70141 -15.18384 -14.77477 -14.61964 -14.34769 -14.08907 -13.87010 -13.72903 -13.06785 -12.60598 -12.58282 -12.48981 -12.12647 -11.93619 -11.84109 -11.69425 -11.44818 -11.34714 -11.03353 -10.91841 -10.86301 -10.60355 -10.34602 -10.11460 -9.87985 -9.45809 -9.07726 -9.02728 -8.90070 -8.82395 -8.30317 -5.97157 -3.99441 0.48647 1.07320 1.30292 2.37262 2.79979 3.33599 3.35044 3.37953 3.40158 3.43301 3.51917 3.88164 4.47453 4.49161 4.64607 4.70548 4.75318 4.93457 4.97234 5.02578 5.11381 5.21210 5.24894 5.29866 5.35626 5.36416 5.39285 5.51338 5.58195 5.71931 5.79554 5.86323 6.12502 6.18129 6.22146 6.36258 6.52787 6.61139 6.82280 6.96673 7.11521 7.46313 7.72080 7.89416 8.06505 8.09520 8.43318 9.07794 9.64032 11.13775 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017765 B = 0.002537 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.721255 B =11033.837845 C =11487.480979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.105 3.895 4 C -0.056 4.056 5 C -0.103 4.103 6 C -0.103 4.103 7 C -0.124 4.124 8 C -0.072 4.072 9 C -0.017 4.017 10 C 0.207 3.793 11 N -0.387 5.387 12 O 0.074 5.926 13 C 0.169 3.831 14 C 0.185 3.815 15 H 0.126 0.874 16 N -0.812 5.812 17 C -0.102 4.102 18 C 0.032 3.968 19 C -0.523 4.523 20 H 0.053 0.947 21 C 0.059 3.941 22 N -0.892 5.892 23 Si 0.889 3.111 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.275 1.275 27 N -0.477 5.477 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.139 0.861 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.139 0.861 37 H 0.340 0.660 38 H 0.349 0.651 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.016 0.984 42 H 0.037 0.963 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.334 -24.288 -7.982 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.311 6.311 3 C 0.029 3.971 4 C -0.059 4.059 5 C -0.121 4.121 6 C -0.122 4.122 7 C -0.142 4.142 8 C -0.092 4.092 9 C -0.019 4.019 10 C -0.062 4.062 11 N -0.096 5.096 12 O 0.016 5.984 13 C -0.055 4.055 14 C 0.070 3.930 15 H 0.144 0.856 16 N -0.340 5.340 17 C -0.141 4.141 18 C -0.005 4.005 19 C -0.562 4.562 20 H 0.071 0.929 21 C -0.143 4.143 22 N -0.531 5.531 23 Si 0.717 3.283 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.200 1.200 27 N -0.210 5.210 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.157 0.843 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.163 0.837 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.034 0.966 42 H 0.056 0.944 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.110 -24.280 -7.790 25.523 hybrid contribution -0.675 -0.159 0.784 1.046 sum -1.785 -24.438 -7.006 25.485 Atomic orbital electron populations 1.22741 0.80422 1.02761 1.00408 1.87772 1.20122 1.27570 1.95618 1.21329 0.89359 0.84419 1.01958 1.19688 0.94346 0.92712 0.99116 1.20927 0.94611 0.97053 0.99473 1.21363 0.93676 0.98913 0.98208 1.21155 1.00374 0.91901 1.00793 1.21194 0.92669 0.98705 0.96659 1.17085 0.93037 0.85895 1.05908 1.23940 0.86314 0.94525 1.01427 1.74888 1.18365 0.94325 1.22054 1.85233 1.34693 1.12704 1.65721 1.31222 0.79158 1.01676 0.93403 1.20909 1.00256 0.74305 0.97573 0.85628 1.58814 1.07515 1.62970 1.04721 1.21852 1.01090 1.01475 0.89645 1.19018 0.97384 0.86819 0.97287 1.21238 1.43573 0.94025 0.97339 0.92918 1.24978 0.95343 0.97131 0.96806 1.69965 1.45414 1.04994 1.32738 0.86639 0.78598 0.78214 0.84804 1.20746 1.21234 1.19962 1.72020 1.30800 0.97419 1.20749 0.93890 0.89424 0.93799 0.91079 0.91156 0.84345 0.85382 0.85099 0.84323 0.84668 0.83663 0.92380 0.92279 0.96556 0.94431 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.30 9.18 -35.23 -0.32 -4.63 16 3 C 0.11 1.26 4.60 36.00 0.17 1.43 16 4 C -0.06 -0.70 5.91 -104.30 -0.62 -1.31 16 5 C -0.10 -1.07 9.37 -39.63 -0.37 -1.44 16 6 C -0.10 -0.90 10.04 -39.52 -0.40 -1.30 16 7 C -0.12 -1.14 10.03 -39.63 -0.40 -1.54 16 8 C -0.07 -0.84 9.70 -39.25 -0.38 -1.22 16 9 C -0.02 -0.23 5.88 -104.89 -0.62 -0.85 16 10 C 0.21 3.15 7.70 -156.12 -1.20 1.95 16 11 N -0.39 -5.81 9.05 30.97 0.28 -5.53 16 12 O 0.07 1.10 11.27 18.05 0.20 1.30 16 13 C 0.17 2.55 7.29 -12.99 -0.09 2.45 16 14 C 0.18 2.85 3.29 -68.86 -0.23 2.62 16 15 H 0.13 1.95 8.14 -51.93 -0.42 1.53 16 16 N -0.81 -11.20 8.68 -5.65 -0.05 -11.25 16 17 C -0.10 -1.95 4.78 -26.73 -0.13 -2.07 16 18 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 19 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 20 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 23 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 27 N -0.48 -7.54 11.26 -9.88 -0.11 -7.66 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.91 7.43 -51.93 -0.39 0.53 16 32 H 0.07 0.87 7.42 -51.93 -0.39 0.49 16 33 H 0.14 1.31 7.00 -52.49 -0.37 0.94 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.14 1.58 7.88 -52.49 -0.41 1.17 16 37 H 0.34 3.84 9.06 -39.30 -0.36 3.49 16 38 H 0.35 4.45 8.97 -39.29 -0.35 4.09 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 367.30 15.07 5.54 5.54 Total: -1.00 -31.47 367.30 -8.46 -39.93 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.01 Total: 3.98 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -3.70 Total: -12.46 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.86 Total: -50.11 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: -0.12 Total: -3.32 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.47 -8.46 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822739482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.287 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds