Wall clock time and date at job start Tue Mar 31 2020 11:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00452 * 2 1 4 4 C 1.50697 * 109.47275 * 179.97438 * 3 2 1 5 5 C 1.38042 * 120.06134 * 0.29787 * 4 3 2 6 6 C 1.38306 * 120.12091 * 180.30181 * 5 4 3 7 7 C 1.38341 * 120.23883 * 359.67859 * 6 5 4 8 8 C 1.38002 * 120.12091 * 0.02562 * 7 6 5 9 9 C 1.39303 * 120.06163 * 180.02562 * 4 3 2 10 10 C 1.48424 * 120.11948 * 359.97438 * 9 4 3 11 11 N 1.30755 * 126.41328 * 359.70539 * 10 9 4 12 12 O 1.21294 * 110.09695 * 180.02562 * 11 10 9 13 13 C 1.33665 * 110.02827 * 359.97438 * 12 11 10 14 14 C 1.50698 * 126.43725 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.46862 * 195.02211 * 14 13 12 16 16 N 1.46901 * 109.47246 * 315.02325 * 14 13 12 17 17 C 1.53006 * 109.46914 * 75.02263 * 14 13 12 18 18 C 1.52999 * 109.46626 * 174.99639 * 17 14 13 19 19 C 1.50706 * 109.46957 * 180.02562 * 18 17 14 20 20 H 1.07999 * 119.99816 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00340 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00296 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99310 * 23 21 19 25 25 H 1.48494 * 109.47201 * 209.99478 * 23 21 19 26 26 H 1.48498 * 109.47011 * 329.99452 * 23 21 19 27 27 N 1.30979 * 107.12240 * 0.26214 * 13 12 11 28 28 H 1.09001 * 109.46999 * 59.99560 * 1 2 3 29 29 H 1.08998 * 109.47774 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47007 * 300.00556 * 1 2 3 31 31 H 1.09002 * 109.46904 * 59.99919 * 3 2 1 32 32 H 1.09000 * 109.47314 * 300.00101 * 3 2 1 33 33 H 1.08000 * 119.94238 * 359.97438 * 5 4 3 34 34 H 1.07997 * 119.87867 * 179.69870 * 6 5 4 35 35 H 1.08001 * 119.93718 * 180.02562 * 7 6 5 36 36 H 1.07995 * 120.06001 * 180.02562 * 8 7 6 37 37 H 1.00893 * 110.99780 * 296.04661 * 16 14 13 38 38 H 1.00906 * 110.99754 * 59.99985 * 16 14 13 39 39 H 1.08993 * 109.46955 * 295.00111 * 17 14 13 40 40 H 1.09000 * 109.47050 * 54.99940 * 17 14 13 41 41 H 1.08993 * 109.47839 * 299.99931 * 18 17 14 42 42 H 1.09000 * 109.47160 * 60.00369 * 18 17 14 43 43 H 0.97000 * 120.00540 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1863 0.0006 5 6 4.1075 -0.0593 -0.0051 6 6 5.4861 -0.1701 0.0018 7 6 6.2762 0.9655 0.0077 8 6 5.6920 2.2157 0.0074 9 6 4.3034 2.3330 0.0013 10 6 3.6694 3.6751 0.0008 11 7 2.3865 3.9274 -0.0057 12 8 2.1973 5.1255 -0.0046 13 6 3.3664 5.7735 0.0034 14 6 3.5615 7.2678 0.0079 15 1 4.5942 7.5001 -0.2522 16 7 2.6589 7.8824 -0.9748 17 6 3.2500 7.8186 1.4009 18 6 3.5673 9.3148 1.4403 19 6 3.2611 9.8573 2.8125 20 1 2.8789 9.2005 3.5799 21 6 3.4689 11.1921 3.0884 22 7 3.9348 11.9919 2.1540 23 14 3.0901 11.8644 4.7895 24 1 4.2986 11.7549 5.6455 25 1 2.6883 13.2898 4.6803 26 1 1.9821 11.0829 5.3952 27 7 4.3105 4.8656 0.0015 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.4953 -0.9491 -0.0096 34 1 5.9474 -1.1466 0.0022 35 1 7.3523 0.8733 0.0127 36 1 6.3097 3.1015 0.0116 37 1 2.8866 7.5837 -1.9112 38 1 1.6947 7.6813 -0.7554 39 1 2.1944 7.6649 1.6247 40 1 3.8578 7.2987 2.1414 41 1 4.6228 9.4685 1.2165 42 1 2.9594 9.8347 0.6997 43 1 4.0814 12.9309 2.3481 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822739482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:41 Heat of formation + Delta-G solvation = 20.071268 kcal Electronic energy + Delta-G solvation = -25534.884890 eV Core-core repulsion = 21775.295182 eV Total energy + Delta-G solvation = -3759.589708 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.71624 -40.69922 -38.64916 -38.16511 -36.90140 -35.14979 -33.90485 -32.67822 -32.08373 -31.60328 -28.43297 -28.22586 -26.64819 -25.91256 -25.60066 -23.73253 -22.96983 -22.24418 -21.27862 -19.25277 -19.01171 -18.34031 -17.88583 -17.47689 -17.28042 -17.00011 -16.60955 -16.52738 -16.20603 -15.57814 -15.51101 -15.40146 -14.75472 -14.56848 -14.29791 -14.15119 -13.89417 -13.62589 -13.45456 -13.35562 -12.90378 -12.80547 -12.63037 -12.50655 -12.46560 -12.38029 -12.14909 -11.99922 -11.78636 -11.64557 -11.30961 -11.05114 -10.91936 -10.48887 -10.04132 -9.86794 -9.73528 -8.13141 -6.22612 -0.48188 0.15471 0.28854 1.29809 1.43333 1.43573 1.54266 1.59569 2.29974 2.45625 2.55856 2.68815 2.75722 3.20512 3.49663 3.63322 3.73231 3.93950 3.99376 4.08428 4.19558 4.23304 4.24427 4.33141 4.43729 4.46863 4.51907 4.53685 4.62428 4.76695 4.78788 4.84271 4.93286 4.99716 5.21895 5.33367 5.36066 5.44614 5.58779 5.83859 5.85747 5.97566 5.99641 6.02383 6.30978 6.45432 6.92335 6.95554 7.45299 8.98093 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017765 B = 0.002537 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.721255 B =11033.837845 C =11487.480979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.114 3.886 4 C -0.072 4.072 5 C -0.107 4.107 6 C -0.090 4.090 7 C -0.118 4.118 8 C -0.083 4.083 9 C -0.047 4.047 10 C 0.204 3.796 11 N -0.392 5.392 12 O 0.074 5.926 13 C 0.171 3.829 14 C 0.201 3.799 15 H 0.126 0.874 16 N -0.817 5.817 17 C -0.089 4.089 18 C 0.040 3.960 19 C -0.544 4.544 20 H 0.055 0.945 21 C 0.004 3.996 22 N -0.928 5.928 23 Si 0.957 3.043 24 H -0.275 1.275 25 H -0.282 1.282 26 H -0.266 1.266 27 N -0.489 5.489 28 H 0.046 0.954 29 H 0.110 0.890 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.148 0.852 34 H 0.165 0.835 35 H 0.162 0.838 36 H 0.134 0.866 37 H 0.357 0.643 38 H 0.356 0.644 39 H 0.062 0.938 40 H 0.054 0.946 41 H -0.008 1.008 42 H 0.019 0.981 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.038 -26.402 -7.603 27.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C 0.038 3.962 4 C -0.075 4.075 5 C -0.125 4.125 6 C -0.108 4.108 7 C -0.135 4.135 8 C -0.103 4.103 9 C -0.049 4.049 10 C -0.065 4.065 11 N -0.103 5.103 12 O 0.017 5.983 13 C -0.052 4.052 14 C 0.085 3.915 15 H 0.143 0.857 16 N -0.348 5.348 17 C -0.128 4.128 18 C 0.003 3.997 19 C -0.582 4.582 20 H 0.073 0.927 21 C -0.194 4.194 22 N -0.568 5.568 23 Si 0.782 3.218 24 H -0.201 1.201 25 H -0.208 1.208 26 H -0.190 1.190 27 N -0.222 5.222 28 H 0.065 0.935 29 H 0.128 0.872 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.166 0.834 34 H 0.182 0.818 35 H 0.180 0.820 36 H 0.152 0.848 37 H 0.172 0.828 38 H 0.171 0.829 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.011 0.989 42 H 0.037 0.963 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.833 -26.405 -7.421 27.441 hybrid contribution -0.750 0.392 0.628 1.054 sum -1.583 -26.014 -6.793 26.932 Atomic orbital electron populations 1.22959 0.79010 1.04368 1.00660 1.87750 1.21689 1.26862 1.95611 1.21127 0.89674 0.84712 1.00732 1.19828 0.94392 0.93293 0.99948 1.21146 0.95706 0.96453 0.99164 1.21787 0.92892 1.00425 0.95707 1.21523 1.02021 0.90877 0.99122 1.21328 0.91973 0.99874 0.97134 1.17296 0.94000 0.85303 1.08261 1.24361 0.86277 0.95174 1.00727 1.74893 1.18540 0.94181 1.22642 1.85222 1.34496 1.12781 1.65781 1.30982 0.79329 1.01301 0.93616 1.20478 1.00565 0.74538 0.95886 0.85678 1.58773 1.07781 1.62858 1.05397 1.21553 1.01181 0.98029 0.92038 1.18819 0.95367 0.90075 0.95457 1.21711 1.43255 0.94501 0.98710 0.92706 1.25850 0.95194 0.97594 1.00797 1.70087 1.46519 1.05339 1.34882 0.85575 0.78697 0.77547 0.79986 1.20086 1.20798 1.19026 1.72009 1.31192 0.97891 1.21111 0.93491 0.87152 0.93725 0.92568 0.92158 0.83437 0.81765 0.82030 0.84777 0.82836 0.82861 0.91942 0.92723 0.98920 0.96271 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -8.50 9.18 -148.98 -1.37 -9.87 16 3 C 0.11 2.75 4.60 71.23 0.33 3.08 16 4 C -0.07 -1.76 5.91 -19.66 -0.12 -1.87 16 5 C -0.11 -2.02 9.37 22.24 0.21 -1.81 16 6 C -0.09 -1.28 10.04 22.31 0.22 -1.05 16 7 C -0.12 -1.84 10.03 22.24 0.22 -1.62 16 8 C -0.08 -1.85 9.70 22.48 0.22 -1.64 16 9 C -0.05 -1.25 5.88 -20.04 -0.12 -1.36 16 10 C 0.20 6.27 7.70 137.30 1.06 7.32 16 11 N -0.39 -11.97 9.05 -59.14 -0.54 -12.51 16 12 O 0.07 2.20 11.27 74.64 0.84 3.04 16 13 C 0.17 5.19 7.29 88.36 0.64 5.83 16 14 C 0.20 6.23 3.29 44.17 0.15 6.37 16 15 H 0.13 3.93 8.14 -2.39 -0.02 3.91 16 16 N -0.82 -22.40 8.68 -171.79 -1.49 -23.89 16 17 C -0.09 -3.45 4.78 30.60 0.15 -3.30 16 18 C 0.04 2.01 4.86 29.85 0.15 2.15 16 19 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 20 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 21 C 0.00 0.21 5.46 84.65 0.46 0.67 16 22 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 23 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 N -0.49 -15.58 11.26 -302.52 -3.41 -18.98 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.11 1.14 8.14 -2.39 -0.02 1.13 16 30 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.06 1.49 7.43 -2.39 -0.02 1.47 16 32 H 0.06 1.54 7.42 -2.39 -0.02 1.52 16 33 H 0.15 2.48 7.00 -2.91 -0.02 2.46 16 34 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 35 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 36 H 0.13 3.02 7.88 -2.91 -0.02 3.00 16 37 H 0.36 7.84 9.06 -89.70 -0.81 7.03 16 38 H 0.36 8.94 8.97 -89.69 -0.80 8.13 16 39 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 41 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 42 H 0.02 1.01 7.75 -2.39 -0.02 0.99 16 43 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -68.23 367.30 0.83 -67.40 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -0.57 Total: 19.85 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 5.05 Total: -15.71 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -5.15 Total: -110.84 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.53 Total: -6.83 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -68.23 0.83 -67.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822739482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.473 kcal (2) G-P(sol) polarization free energy of solvation -68.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds