Wall clock time and date at job start Tue Mar 31 2020 11:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00547 * 2 1 4 4 C 1.50699 * 109.46987 * 179.97438 * 3 2 1 5 5 C 1.38343 * 119.94575 * 270.01850 * 4 3 2 6 6 C 1.38291 * 120.24383 * 179.97438 * 5 4 3 7 7 C 1.38042 * 120.11968 * 0.04473 * 6 5 4 8 8 C 1.39300 * 119.88181 * 359.70848 * 7 6 5 9 9 C 1.48418 * 120.12427 * 180.27299 * 8 7 6 10 10 N 1.30758 * 126.41299 * 179.97438 * 9 8 7 11 11 O 1.21294 * 110.09687 * 179.86645 * 10 9 8 12 12 C 1.33669 * 110.02439 * 0.39432 * 11 10 9 13 13 C 1.50705 * 126.43477 * 179.71747 * 12 11 10 14 14 H 1.09005 * 109.46899 * 165.04718 * 13 12 11 15 15 N 1.46895 * 109.47315 * 45.04382 * 13 12 11 16 16 C 1.52999 * 109.46999 * 285.04298 * 13 12 11 17 17 C 1.52999 * 109.46887 * 185.00296 * 16 13 12 18 18 C 1.50705 * 109.47032 * 180.02562 * 17 16 13 19 19 H 1.07996 * 120.00160 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99622 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99572 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00458 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47139 * 90.00195 * 22 20 18 24 24 H 1.48496 * 109.47021 * 210.00376 * 22 20 18 25 25 H 1.48502 * 109.46920 * 330.00423 * 22 20 18 26 26 N 1.30968 * 107.12432 * 359.75355 * 12 11 10 27 27 C 1.38007 * 119.93647 * 90.00846 * 4 3 2 28 28 H 1.08994 * 109.47281 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46222 * 300.00179 * 1 2 3 30 30 H 1.08998 * 109.46774 * 59.99638 * 1 2 3 31 31 H 1.09001 * 109.46583 * 59.99977 * 3 2 1 32 32 H 1.08996 * 109.47212 * 300.00164 * 3 2 1 33 33 H 1.07998 * 119.87355 * 359.97438 * 5 4 3 34 34 H 1.08004 * 119.94204 * 180.02562 * 6 5 4 35 35 H 1.08006 * 120.05721 * 179.97438 * 7 6 5 36 36 H 1.00904 * 111.00187 * 176.04063 * 15 13 12 37 37 H 1.00899 * 111.00305 * 299.99754 * 15 13 12 38 38 H 1.08999 * 109.47422 * 304.99966 * 16 13 12 39 39 H 1.08995 * 109.47581 * 65.00545 * 16 13 12 40 40 H 1.09003 * 109.47295 * 299.99999 * 17 16 13 41 41 H 1.09004 * 109.47257 * 60.00421 * 17 16 13 42 42 H 0.97002 * 120.00035 * 179.97438 * 21 20 18 43 43 H 1.08002 * 120.05837 * 359.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5126 1.1862 0.0006 5 6 4.2005 1.1315 1.1997 6 6 5.5790 1.0216 1.2074 7 6 6.2763 0.9669 0.0173 8 6 5.5884 1.0164 -1.1930 9 6 6.3322 0.9519 -2.4757 10 7 5.8144 0.9875 -3.6758 11 8 6.6916 0.9171 -4.5105 12 6 7.8839 0.8188 -3.9143 13 6 9.2210 0.7046 -4.6002 14 1 10.0160 0.9061 -3.8822 15 7 9.2933 1.6788 -5.6972 16 6 9.3870 -0.7089 -5.1616 17 6 10.7919 -0.8630 -5.7477 18 6 10.9553 -2.2552 -6.3013 19 1 10.1390 -2.9597 -6.2407 20 6 12.1474 -2.6297 -6.8841 21 7 12.2902 -3.8448 -7.3667 22 14 13.5596 -1.4114 -6.9884 23 1 14.4041 -1.5273 -5.7724 24 1 14.3799 -1.7061 -8.1906 25 1 13.0175 -0.0323 -7.0849 26 7 7.6718 0.8396 -2.6221 27 6 4.1997 1.1317 -1.1950 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6888 1.8464 -0.8899 33 1 3.6589 1.1747 2.1330 34 1 6.1111 0.9788 2.1463 35 1 7.3530 0.8815 0.0246 36 1 10.2038 1.6669 -6.1320 37 1 8.5661 1.5130 -6.3767 38 1 9.2451 -1.4363 -4.3623 39 1 8.6467 -0.8788 -5.9432 40 1 10.9339 -0.1356 -6.5470 41 1 11.5324 -0.6933 -4.9660 42 1 13.1287 -4.1082 -7.7772 43 1 3.6617 1.1740 -2.1305 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822740316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:45 Heat of formation + Delta-G solvation = 38.890986 kcal Electronic energy + Delta-G solvation = -24933.084320 eV Core-core repulsion = 21174.310696 eV Total energy + Delta-G solvation = -3758.773624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.44844 -39.82050 -37.95223 -37.02055 -35.72519 -33.23423 -32.52869 -32.23655 -30.71427 -30.38538 -27.71009 -26.99195 -25.70589 -24.85551 -24.29751 -22.88524 -21.59883 -20.89529 -20.08365 -17.95319 -17.76813 -16.96098 -16.79803 -16.65356 -16.40956 -16.12545 -15.96758 -15.02979 -14.90191 -14.45659 -14.29526 -13.90907 -13.74359 -13.36252 -13.33990 -13.00064 -12.80437 -12.71974 -12.60942 -12.00371 -11.96725 -11.71102 -11.62666 -11.43987 -11.38784 -11.04687 -10.94366 -10.44494 -10.22071 -10.11833 -9.98512 -9.92277 -9.35837 -9.21127 -8.88307 -8.67525 -8.62520 -6.13679 -4.13952 0.53145 0.98593 1.38384 2.39008 2.88363 3.24008 3.26813 3.31552 3.32491 3.40957 3.78607 3.91167 4.35316 4.44505 4.46208 4.71421 4.78197 4.82453 4.88515 4.93730 4.97027 5.01450 5.11302 5.18800 5.26217 5.28683 5.30102 5.41277 5.51173 5.65860 5.69250 5.91099 6.10523 6.13938 6.17747 6.21827 6.23585 6.54675 6.56580 6.71450 7.01561 7.03496 7.16631 7.44076 7.64949 8.19147 8.41400 8.90103 9.46673 10.99412 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023221 B = 0.002192 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.536189 B =12768.699953 C =12923.336483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.104 3.896 4 C -0.098 4.098 5 C -0.082 4.082 6 C -0.124 4.124 7 C -0.067 4.067 8 C -0.017 4.017 9 C 0.207 3.793 10 N -0.381 5.381 11 O 0.084 5.916 12 C 0.219 3.781 13 C 0.178 3.822 14 H 0.124 0.876 15 N -0.840 5.840 16 C -0.136 4.136 17 C -0.009 4.009 18 C -0.525 4.525 19 H 0.072 0.928 20 C 0.067 3.933 21 N -0.899 5.899 22 Si 0.882 3.118 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.265 1.265 26 N -0.479 5.479 27 C -0.063 4.063 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.363 0.637 37 H 0.347 0.653 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.264 0.736 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.772 13.589 15.902 28.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.028 3.972 4 C -0.098 4.098 5 C -0.101 4.101 6 C -0.142 4.142 7 C -0.087 4.087 8 C -0.019 4.019 9 C -0.063 4.063 10 N -0.088 5.088 11 O 0.024 5.976 12 C -0.002 4.002 13 C 0.064 3.936 14 H 0.142 0.858 15 N -0.374 5.374 16 C -0.176 4.176 17 C -0.047 4.047 18 C -0.563 4.563 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.537 5.537 22 Si 0.709 3.291 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.189 1.189 26 N -0.212 5.212 27 C -0.083 4.083 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.180 0.820 37 H 0.160 0.840 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.074 0.926 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.398 13.920 16.610 29.085 hybrid contribution 0.890 -0.238 -0.876 1.272 sum -18.507 13.681 15.734 27.880 Atomic orbital electron populations 1.22777 0.80803 1.03037 1.00026 1.87996 1.19748 1.27239 1.95407 1.21320 0.89447 0.85296 1.01147 1.19424 0.94225 1.03138 0.93042 1.21189 0.94382 0.97061 0.97470 1.21108 0.94029 1.01012 0.98092 1.21316 1.01037 0.95637 0.90737 1.17305 0.91873 1.04773 0.87965 1.23819 0.87416 1.01743 0.93318 1.74840 1.13144 1.21291 0.99508 1.85250 1.13386 1.64994 1.33924 1.28916 0.91139 0.92965 0.87211 1.20260 0.85340 0.93917 0.94064 0.85828 1.58962 1.11002 1.51918 1.15470 1.22362 1.01512 0.92813 1.00896 1.19574 0.90986 0.98458 0.95670 1.21022 1.00591 0.96319 1.38366 0.90983 1.25048 0.98545 0.95138 0.94728 1.69911 1.26162 1.18222 1.39440 0.86756 0.82476 0.82062 0.77816 1.20200 1.21331 1.18935 1.71942 1.13055 1.21134 1.15049 1.21039 0.92429 0.96395 0.98404 0.89406 0.93996 0.93901 0.92126 0.92193 0.85453 0.84890 0.84324 0.82005 0.84011 0.91294 0.91503 0.96375 0.96420 0.92572 0.85082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.83 10.69 -35.23 -0.38 -4.20 16 3 C 0.10 0.86 6.06 36.01 0.22 1.07 16 4 C -0.10 -0.99 5.50 -104.67 -0.58 -1.57 16 5 C -0.08 -0.73 9.69 -39.52 -0.38 -1.11 16 6 C -0.12 -1.14 10.03 -39.63 -0.40 -1.53 16 7 C -0.07 -0.78 9.70 -39.26 -0.38 -1.16 16 8 C -0.02 -0.24 5.88 -104.89 -0.62 -0.85 16 9 C 0.21 3.29 7.80 -156.12 -1.22 2.07 16 10 N -0.38 -6.24 11.86 30.97 0.37 -5.87 16 11 O 0.08 1.35 11.27 18.04 0.20 1.55 16 12 C 0.22 3.48 7.30 -12.99 -0.09 3.38 16 13 C 0.18 2.67 3.35 -68.87 -0.23 2.44 16 14 H 0.12 1.80 8.14 -51.93 -0.42 1.38 16 15 N -0.84 -11.27 9.17 -5.65 -0.05 -11.32 16 16 C -0.14 -2.43 4.78 -26.73 -0.13 -2.56 16 17 C -0.01 -0.20 3.81 -27.88 -0.11 -0.31 16 18 C -0.53 -14.25 9.66 -34.44 -0.33 -14.58 16 19 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 20 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 21 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 22 Si 0.88 20.62 27.47 -169.99 -4.67 15.95 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 26 N -0.48 -7.85 11.26 -9.88 -0.11 -7.97 16 27 C -0.06 -0.76 9.34 -39.25 -0.37 -1.12 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 34 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 35 H 0.14 1.57 7.88 -52.48 -0.41 1.16 16 36 H 0.36 4.74 7.55 -39.29 -0.30 4.44 16 37 H 0.35 4.34 8.97 -39.29 -0.35 3.99 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.02 0.37 5.93 -51.93 -0.31 0.06 16 41 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.13 1.57 7.87 -52.49 -0.41 1.16 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -32.04 369.02 -7.89 -39.93 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.98 Total: 5.36 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -3.60 Total: -12.73 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.98 Total: -51.42 kcal Atomic # 8 Polarization: -2.48 SS G_CDS: -0.17 Total: -2.65 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.04 -7.89 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822740316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.820 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds