Wall clock time and date at job start Tue Mar 31 2020 11:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00547 * 2 1 4 4 C 1.50699 * 109.46987 * 179.97438 * 3 2 1 5 5 C 1.38343 * 119.94575 * 270.01850 * 4 3 2 6 6 C 1.38291 * 120.24383 * 179.97438 * 5 4 3 7 7 C 1.38042 * 120.11968 * 0.04473 * 6 5 4 8 8 C 1.39300 * 119.88181 * 359.70848 * 7 6 5 9 9 C 1.48418 * 120.12427 * 180.27299 * 8 7 6 10 10 N 1.30758 * 126.41299 * 179.97438 * 9 8 7 11 11 O 1.21294 * 110.09687 * 179.86645 * 10 9 8 12 12 C 1.33669 * 110.02439 * 0.39432 * 11 10 9 13 13 C 1.50705 * 126.43477 * 179.71747 * 12 11 10 14 14 H 1.09005 * 109.46899 * 165.04718 * 13 12 11 15 15 N 1.46895 * 109.47315 * 45.04382 * 13 12 11 16 16 C 1.52999 * 109.46999 * 285.04298 * 13 12 11 17 17 C 1.52999 * 109.46887 * 185.00296 * 16 13 12 18 18 C 1.50705 * 109.47032 * 180.02562 * 17 16 13 19 19 H 1.07996 * 120.00160 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99622 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99572 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00458 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47139 * 90.00195 * 22 20 18 24 24 H 1.48496 * 109.47021 * 210.00376 * 22 20 18 25 25 H 1.48502 * 109.46920 * 330.00423 * 22 20 18 26 26 N 1.30968 * 107.12432 * 359.75355 * 12 11 10 27 27 C 1.38007 * 119.93647 * 90.00846 * 4 3 2 28 28 H 1.08994 * 109.47281 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46222 * 300.00179 * 1 2 3 30 30 H 1.08998 * 109.46774 * 59.99638 * 1 2 3 31 31 H 1.09001 * 109.46583 * 59.99977 * 3 2 1 32 32 H 1.08996 * 109.47212 * 300.00164 * 3 2 1 33 33 H 1.07998 * 119.87355 * 359.97438 * 5 4 3 34 34 H 1.08004 * 119.94204 * 180.02562 * 6 5 4 35 35 H 1.08006 * 120.05721 * 179.97438 * 7 6 5 36 36 H 1.00904 * 111.00187 * 176.04063 * 15 13 12 37 37 H 1.00899 * 111.00305 * 299.99754 * 15 13 12 38 38 H 1.08999 * 109.47422 * 304.99966 * 16 13 12 39 39 H 1.08995 * 109.47581 * 65.00545 * 16 13 12 40 40 H 1.09003 * 109.47295 * 299.99999 * 17 16 13 41 41 H 1.09004 * 109.47257 * 60.00421 * 17 16 13 42 42 H 0.97002 * 120.00035 * 179.97438 * 21 20 18 43 43 H 1.08002 * 120.05837 * 359.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5126 1.1862 0.0006 5 6 4.2005 1.1315 1.1997 6 6 5.5790 1.0216 1.2074 7 6 6.2763 0.9669 0.0173 8 6 5.5884 1.0164 -1.1930 9 6 6.3322 0.9519 -2.4757 10 7 5.8144 0.9875 -3.6758 11 8 6.6916 0.9171 -4.5105 12 6 7.8839 0.8188 -3.9143 13 6 9.2210 0.7046 -4.6002 14 1 10.0160 0.9061 -3.8822 15 7 9.2933 1.6788 -5.6972 16 6 9.3870 -0.7089 -5.1616 17 6 10.7919 -0.8630 -5.7477 18 6 10.9553 -2.2552 -6.3013 19 1 10.1390 -2.9597 -6.2407 20 6 12.1474 -2.6297 -6.8841 21 7 12.2902 -3.8448 -7.3667 22 14 13.5596 -1.4114 -6.9884 23 1 14.4041 -1.5273 -5.7724 24 1 14.3799 -1.7061 -8.1906 25 1 13.0175 -0.0323 -7.0849 26 7 7.6718 0.8396 -2.6221 27 6 4.1997 1.1317 -1.1950 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6888 1.8464 -0.8899 33 1 3.6589 1.1747 2.1330 34 1 6.1111 0.9788 2.1463 35 1 7.3530 0.8815 0.0246 36 1 10.2038 1.6669 -6.1320 37 1 8.5661 1.5130 -6.3767 38 1 9.2451 -1.4363 -4.3623 39 1 8.6467 -0.8788 -5.9432 40 1 10.9339 -0.1356 -6.5470 41 1 11.5324 -0.6933 -4.9660 42 1 13.1287 -4.1082 -7.7772 43 1 3.6617 1.1740 -2.1305 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822740316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:44 Heat of formation + Delta-G solvation = 15.542657 kcal Electronic energy + Delta-G solvation = -24934.096780 eV Core-core repulsion = 21174.310696 eV Total energy + Delta-G solvation = -3759.786083 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.68152 -40.59998 -38.61537 -38.36806 -36.89895 -35.08368 -33.73337 -33.06513 -32.21358 -31.52702 -28.57322 -28.23000 -26.38380 -25.94100 -25.77343 -24.04487 -22.53455 -22.30020 -21.34321 -19.25547 -19.11976 -18.60802 -17.68577 -17.52901 -17.34140 -16.93815 -16.76384 -16.24394 -15.98302 -15.66004 -15.57911 -15.21567 -14.77865 -14.62984 -14.60260 -14.24565 -14.06339 -13.69625 -13.47601 -13.19038 -13.09946 -12.93571 -12.72039 -12.45992 -12.41791 -12.33388 -11.98665 -11.97317 -11.85711 -11.68205 -11.43656 -11.35631 -10.75771 -10.68920 -10.00680 -9.89235 -9.74998 -8.28020 -6.34224 -0.44534 0.17708 0.23398 1.29924 1.41801 1.43155 1.54290 1.65844 2.26405 2.38610 2.54270 2.76658 3.07749 3.12047 3.55356 3.66315 3.78960 3.87524 3.92480 4.02294 4.10796 4.18691 4.25943 4.33865 4.40222 4.52312 4.55096 4.57018 4.61506 4.66493 4.74861 4.84148 4.86222 4.91160 4.92283 5.30873 5.34997 5.37603 5.42679 5.46338 5.63263 5.80930 5.93194 6.17006 6.25857 6.41414 6.74444 6.96840 7.30440 8.88790 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023221 B = 0.002192 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.536189 B =12768.699953 C =12923.336483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.103 3.897 4 C -0.103 4.103 5 C -0.073 4.073 6 C -0.117 4.117 7 C -0.077 4.077 8 C -0.049 4.049 9 C 0.205 3.795 10 N -0.398 5.398 11 O 0.078 5.922 12 C 0.215 3.785 13 C 0.194 3.806 14 H 0.136 0.864 15 N -0.833 5.833 16 C -0.126 4.126 17 C -0.005 4.005 18 C -0.536 4.536 19 H 0.024 0.976 20 C -0.001 4.001 21 N -0.954 5.954 22 Si 0.955 3.045 23 H -0.269 1.269 24 H -0.290 1.290 25 H -0.228 1.228 26 N -0.490 5.490 27 C -0.075 4.075 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.161 0.839 34 H 0.165 0.835 35 H 0.136 0.864 36 H 0.369 0.631 37 H 0.353 0.647 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.040 0.960 41 H 0.030 0.970 42 H 0.266 0.734 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.940 16.196 17.992 30.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.027 3.973 4 C -0.103 4.103 5 C -0.092 4.092 6 C -0.135 4.135 7 C -0.097 4.097 8 C -0.051 4.051 9 C -0.064 4.064 10 N -0.106 5.106 11 O 0.021 5.979 12 C -0.006 4.006 13 C 0.080 3.920 14 H 0.153 0.847 15 N -0.367 5.367 16 C -0.166 4.166 17 C -0.043 4.043 18 C -0.574 4.574 19 H 0.043 0.957 20 C -0.197 4.197 21 N -0.595 5.595 22 Si 0.777 3.223 23 H -0.195 1.195 24 H -0.217 1.217 25 H -0.151 1.151 26 N -0.223 5.223 27 C -0.095 4.095 28 H 0.110 0.890 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.179 0.821 34 H 0.183 0.817 35 H 0.154 0.846 36 H 0.187 0.813 37 H 0.167 0.833 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.588 16.551 18.691 31.733 hybrid contribution 0.782 -1.138 -1.442 1.997 sum -18.806 15.413 17.249 29.812 Atomic orbital electron populations 1.22948 0.79164 1.03794 1.01224 1.87940 1.21658 1.28238 1.95671 1.21425 0.88134 0.85066 1.02691 1.19736 0.95492 1.02333 0.92763 1.21617 0.94422 0.94872 0.98244 1.21477 0.94378 0.99315 0.98307 1.21434 1.01100 0.96123 0.91059 1.17521 0.92534 1.07423 0.87657 1.24336 0.87391 1.00605 0.94100 1.74821 1.13380 1.22547 0.99889 1.85223 1.13440 1.65263 1.34010 1.29057 0.91332 0.92871 0.87316 1.20041 0.85259 0.92022 0.94681 0.84656 1.58955 1.11612 1.50732 1.15401 1.22177 0.99568 0.94710 1.00193 1.19504 0.93115 0.95230 0.96438 1.21417 0.99257 0.98417 1.38267 0.95745 1.26131 1.02033 0.97266 0.94274 1.70092 1.27208 1.20966 1.41198 0.85593 0.78135 0.80827 0.77698 1.19473 1.21667 1.15065 1.71933 1.13526 1.21548 1.15286 1.21072 0.92028 0.97289 0.99091 0.88982 0.92152 0.93317 0.89407 0.91830 0.82138 0.81717 0.84643 0.81312 0.83323 0.92964 0.92064 0.94194 0.95177 0.92559 0.86087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.65 10.69 -148.98 -1.59 -9.24 16 3 C 0.10 1.49 6.06 71.24 0.43 1.92 16 4 C -0.10 -1.93 5.50 -19.89 -0.11 -2.04 16 5 C -0.07 -1.07 9.69 22.31 0.22 -0.86 16 6 C -0.12 -1.84 10.03 22.24 0.22 -1.61 16 7 C -0.08 -1.73 9.70 22.48 0.22 -1.51 16 8 C -0.05 -1.35 5.88 -20.04 -0.12 -1.47 16 9 C 0.21 6.66 7.80 137.30 1.07 7.73 16 10 N -0.40 -13.37 11.86 -59.14 -0.70 -14.07 16 11 O 0.08 2.54 11.27 74.60 0.84 3.38 16 12 C 0.22 6.81 7.30 88.36 0.65 7.45 16 13 C 0.19 5.57 3.35 44.17 0.15 5.72 16 14 H 0.14 3.64 8.14 -2.38 -0.02 3.62 16 15 N -0.83 -20.56 9.17 -171.80 -1.58 -22.13 16 16 C -0.13 -4.49 4.78 30.59 0.15 -4.35 16 17 C -0.01 -0.22 3.81 29.85 0.11 -0.11 16 18 C -0.54 -29.67 9.66 25.60 0.25 -29.42 16 19 H 0.02 1.53 7.99 -2.91 -0.02 1.50 16 20 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 21 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 22 Si 0.96 41.61 27.47 68.60 1.88 43.49 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 24 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 25 H -0.23 -8.53 6.54 99.48 0.65 -7.88 16 26 N -0.49 -16.12 11.26 -302.52 -3.41 -19.52 16 27 C -0.07 -1.81 9.34 22.48 0.21 -1.60 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.09 0.78 8.08 -2.39 -0.02 0.76 16 32 H 0.06 0.85 8.08 -2.39 -0.02 0.83 16 33 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 34 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.14 3.02 7.88 -2.91 -0.02 3.00 16 36 H 0.37 8.45 7.55 -89.69 -0.68 7.77 16 37 H 0.35 8.23 8.97 -89.69 -0.80 7.43 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.04 1.50 5.93 -2.39 -0.01 1.49 16 41 H 0.03 1.19 7.57 -2.38 -0.02 1.17 16 42 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 43 H 0.12 3.05 7.87 -2.91 -0.02 3.03 16 Total: -1.00 -72.36 369.02 0.41 -71.95 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -0.49 Total: 23.26 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: 5.15 Total: -18.19 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -5.38 Total: -114.65 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.75 Total: -5.86 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 1.88 Total: 43.49 kcal Total: -72.36 0.41 -71.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822740316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.492 kcal (2) G-P(sol) polarization free energy of solvation -72.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds