Wall clock time and date at job start Tue Mar 31 2020 11:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00053 * 2 1 4 4 C 1.50700 * 109.47161 * 180.02562 * 3 2 1 5 5 C 1.38343 * 119.93967 * 89.99954 * 4 3 2 6 6 C 1.38296 * 120.24200 * 180.02562 * 5 4 3 7 7 C 1.38050 * 120.11919 * 0.02562 * 6 5 4 8 8 C 1.39308 * 119.87717 * 359.97438 * 7 6 5 9 9 C 1.48426 * 120.11537 * 179.97438 * 8 7 6 10 10 N 1.30755 * 126.40924 * 180.02562 * 9 8 7 11 11 O 1.21293 * 110.09567 * 179.97438 * 10 9 8 12 12 C 1.33664 * 110.02669 * 359.97438 * 11 10 9 13 13 C 1.50707 * 126.43678 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.46844 * 195.01866 * 13 12 11 15 15 N 1.46897 * 109.46776 * 315.02103 * 13 12 11 16 16 C 1.52999 * 109.46980 * 75.02253 * 13 12 11 17 17 C 1.53006 * 109.46626 * 175.00014 * 16 13 12 18 18 C 1.50699 * 109.46866 * 179.97438 * 17 16 13 19 19 H 1.08003 * 119.99963 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00270 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00302 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99832 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47310 * 89.99428 * 22 20 18 24 24 H 1.48491 * 109.47296 * 209.99911 * 22 20 18 25 25 H 1.48502 * 109.46905 * 329.99956 * 22 20 18 26 26 N 1.30981 * 107.12356 * 0.23870 * 12 11 10 27 27 C 1.38006 * 119.94136 * 270.28539 * 4 3 2 28 28 H 1.09000 * 109.47301 * 59.99519 * 1 2 3 29 29 H 1.08998 * 109.46973 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46854 * 299.99664 * 1 2 3 31 31 H 1.09008 * 109.47004 * 60.00377 * 3 2 1 32 32 H 1.09000 * 109.47484 * 300.00610 * 3 2 1 33 33 H 1.08002 * 119.87866 * 0.02562 * 5 4 3 34 34 H 1.08000 * 119.94048 * 180.02562 * 6 5 4 35 35 H 1.07999 * 120.05435 * 179.97438 * 7 6 5 36 36 H 1.00888 * 111.00369 * 60.00291 * 15 13 12 37 37 H 1.00900 * 110.99476 * 183.96192 * 15 13 12 38 38 H 1.08993 * 109.47839 * 55.00083 * 16 13 12 39 39 H 1.09000 * 109.47160 * 294.99645 * 16 13 12 40 40 H 1.09000 * 109.47050 * 299.99699 * 17 16 13 41 41 H 1.09001 * 109.46801 * 59.99811 * 17 16 13 42 42 H 0.97002 * 119.99998 * 179.97438 * 21 20 18 43 43 H 1.08005 * 120.06008 * 359.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.2004 1.1321 -1.1997 6 6 5.5790 1.0224 -1.2076 7 6 6.2762 0.9659 -0.0175 8 6 5.5886 1.0202 1.1929 9 6 6.3329 0.9594 2.4756 10 7 5.8155 0.9995 3.6757 11 8 6.6928 0.9280 4.5103 12 6 7.8852 0.8322 3.9141 13 6 9.2228 0.7242 4.5999 14 1 10.0169 0.9278 3.8814 15 7 9.2915 1.7003 5.6955 16 6 9.3945 -0.6879 5.1632 17 6 10.8001 -0.8356 5.7494 18 6 10.9690 -2.2263 6.3048 19 1 10.1551 -2.9338 6.2461 20 6 12.1626 -2.5954 6.8880 21 7 12.3098 -3.8089 7.3732 22 14 13.5701 -1.3715 6.9903 23 1 13.4712 -0.6084 8.2605 24 1 14.8634 -2.0999 6.9498 25 1 13.4943 -0.4330 5.8419 26 7 7.6731 0.8557 2.6217 27 6 4.1993 1.1259 1.1949 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6887 1.8464 0.8901 32 1 1.6886 1.8465 -0.8899 33 1 3.6588 1.1756 -2.1331 34 1 6.1110 0.9808 -2.1465 35 1 7.3527 0.8798 -0.0249 36 1 8.5651 1.5327 6.3752 37 1 10.2021 1.6926 6.1300 38 1 9.2552 -1.4170 4.3651 39 1 8.6549 -0.8595 5.9452 40 1 11.5397 -0.6640 4.9673 41 1 10.9393 -0.1065 6.5475 42 1 13.1497 -4.0687 7.7832 43 1 3.6610 1.1641 2.1305 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822740318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:47 Heat of formation + Delta-G solvation = 38.895259 kcal Electronic energy + Delta-G solvation = -24931.855227 eV Core-core repulsion = 21173.081789 eV Total energy + Delta-G solvation = -3758.773439 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.44932 -39.82021 -37.95180 -37.02173 -35.72539 -33.23468 -32.52872 -32.23607 -30.71481 -30.38776 -27.70957 -26.99327 -25.70618 -24.85571 -24.29833 -22.88546 -21.59899 -20.89609 -20.08359 -17.95467 -17.76824 -16.95921 -16.79653 -16.65482 -16.40981 -16.12724 -15.96777 -15.03181 -14.90155 -14.47424 -14.27927 -13.91076 -13.73809 -13.36271 -13.33944 -13.00119 -12.80000 -12.70726 -12.62230 -12.04499 -11.97901 -11.71759 -11.62649 -11.40678 -11.36145 -11.05392 -10.93803 -10.45965 -10.19829 -10.11859 -10.03272 -9.89049 -9.35889 -9.21152 -8.88380 -8.67787 -8.62605 -6.13661 -4.13953 0.53146 0.98638 1.38311 2.38981 2.88307 3.23256 3.26966 3.32236 3.32892 3.40772 3.78586 3.91116 4.35417 4.44519 4.46226 4.71385 4.78017 4.82409 4.88504 4.93727 4.97004 5.01430 5.11346 5.18780 5.26205 5.28637 5.30032 5.41352 5.51224 5.65869 5.69264 5.91062 6.10294 6.13872 6.17753 6.21970 6.23575 6.54620 6.56595 6.71405 7.00888 7.03067 7.17612 7.43776 7.64992 8.19121 8.41406 8.90095 9.46728 10.99421 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023270 B = 0.002191 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.989019 B =12776.177038 C =12928.752531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.104 3.896 4 C -0.098 4.098 5 C -0.082 4.082 6 C -0.125 4.125 7 C -0.067 4.067 8 C -0.018 4.018 9 C 0.207 3.793 10 N -0.381 5.381 11 O 0.084 5.916 12 C 0.219 3.781 13 C 0.178 3.822 14 H 0.124 0.876 15 N -0.840 5.840 16 C -0.136 4.136 17 C -0.009 4.009 18 C -0.525 4.525 19 H 0.072 0.928 20 C 0.068 3.932 21 N -0.899 5.899 22 Si 0.880 3.120 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.264 1.264 26 N -0.479 5.479 27 C -0.062 4.062 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.347 0.653 37 H 0.363 0.637 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.022 0.978 41 H 0.013 0.987 42 H 0.264 0.736 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.812 13.476 -15.964 28.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.028 3.972 4 C -0.098 4.098 5 C -0.101 4.101 6 C -0.143 4.143 7 C -0.087 4.087 8 C -0.019 4.019 9 C -0.063 4.063 10 N -0.088 5.088 11 O 0.025 5.975 12 C -0.002 4.002 13 C 0.064 3.936 14 H 0.142 0.858 15 N -0.373 5.373 16 C -0.176 4.176 17 C -0.047 4.047 18 C -0.563 4.563 19 H 0.090 0.910 20 C -0.134 4.134 21 N -0.537 5.537 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.189 1.189 26 N -0.212 5.212 27 C -0.082 4.082 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.180 0.820 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.040 0.960 41 H 0.032 0.968 42 H 0.074 0.926 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.437 13.816 -16.678 29.100 hybrid contribution 0.880 -0.225 0.914 1.289 sum -18.557 13.591 -15.763 27.885 Atomic orbital electron populations 1.22779 0.80804 1.03036 1.00028 1.87998 1.19747 1.27239 1.95407 1.21323 0.89448 0.85295 1.01148 1.19427 0.94229 1.03142 0.93042 1.21192 0.94382 0.97052 0.97467 1.21111 0.94029 1.01019 0.98092 1.21320 1.01043 0.95617 0.90736 1.17306 0.91860 1.04801 0.87963 1.23819 0.87418 1.01743 0.93317 1.74840 1.13158 1.21279 0.99509 1.85247 1.13388 1.64985 1.33927 1.28919 0.91124 0.92984 0.87212 1.20261 0.85313 0.93927 0.94079 0.85816 1.58956 1.11039 1.51803 1.15545 1.22362 1.01485 0.92846 1.00887 1.19571 0.91134 0.98257 0.95700 1.21021 1.00579 0.96403 1.38297 0.90982 1.25043 0.98516 0.95177 0.94702 1.69908 1.26063 1.18437 1.39325 0.86774 0.81891 0.81613 0.78980 1.20182 1.21292 1.18868 1.71948 1.13018 1.21155 1.15050 1.21036 0.92418 0.96383 0.98412 0.93994 0.89407 0.93901 0.92194 0.92124 0.85451 0.84889 0.84322 0.84001 0.82044 0.91264 0.91528 0.95981 0.96838 0.92571 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.82 10.69 -35.23 -0.38 -4.20 16 3 C 0.10 0.86 6.06 36.01 0.22 1.07 16 4 C -0.10 -0.99 5.51 -104.67 -0.58 -1.57 16 5 C -0.08 -0.73 9.69 -39.52 -0.38 -1.11 16 6 C -0.12 -1.14 10.03 -39.63 -0.40 -1.53 16 7 C -0.07 -0.78 9.70 -39.25 -0.38 -1.16 16 8 C -0.02 -0.24 5.88 -104.89 -0.62 -0.85 16 9 C 0.21 3.29 7.80 -156.13 -1.22 2.07 16 10 N -0.38 -6.24 11.86 30.96 0.37 -5.87 16 11 O 0.08 1.35 11.27 18.05 0.20 1.55 16 12 C 0.22 3.48 7.30 -12.98 -0.09 3.38 16 13 C 0.18 2.67 3.35 -68.86 -0.23 2.44 16 14 H 0.12 1.81 8.14 -51.93 -0.42 1.39 16 15 N -0.84 -11.22 9.17 -5.65 -0.05 -11.27 16 16 C -0.14 -2.43 4.78 -26.73 -0.13 -2.56 16 17 C -0.01 -0.20 3.81 -27.88 -0.11 -0.30 16 18 C -0.53 -14.24 9.66 -34.44 -0.33 -14.58 16 19 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 20 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 21 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 22 Si 0.88 20.59 27.47 -169.99 -4.67 15.92 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 26 N -0.48 -7.86 11.26 -9.88 -0.11 -7.97 16 27 C -0.06 -0.75 9.34 -39.26 -0.37 -1.12 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.44 8.09 -51.92 -0.42 0.02 16 32 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 33 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.14 1.57 7.88 -52.49 -0.41 1.16 16 36 H 0.35 4.32 8.97 -39.30 -0.35 3.97 16 37 H 0.36 4.67 7.55 -39.29 -0.30 4.37 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 41 H 0.01 0.27 6.30 -51.93 -0.33 -0.06 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.13 1.57 7.87 -52.48 -0.41 1.16 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -32.09 369.02 -7.89 -39.97 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.98 Total: 5.27 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -3.60 Total: -12.72 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.98 Total: -51.36 kcal Atomic # 8 Polarization: -2.47 SS G_CDS: -0.17 Total: -2.65 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.09 -7.89 -39.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822740318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.868 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds