Wall clock time and date at job start Tue Mar 31 2020 11:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00053 * 2 1 4 4 C 1.50700 * 109.47161 * 180.02562 * 3 2 1 5 5 C 1.38343 * 119.93967 * 89.99954 * 4 3 2 6 6 C 1.38296 * 120.24200 * 180.02562 * 5 4 3 7 7 C 1.38050 * 120.11919 * 0.02562 * 6 5 4 8 8 C 1.39308 * 119.87717 * 359.97438 * 7 6 5 9 9 C 1.48426 * 120.11537 * 179.97438 * 8 7 6 10 10 N 1.30755 * 126.40924 * 180.02562 * 9 8 7 11 11 O 1.21293 * 110.09567 * 179.97438 * 10 9 8 12 12 C 1.33664 * 110.02669 * 359.97438 * 11 10 9 13 13 C 1.50707 * 126.43678 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.46844 * 195.01866 * 13 12 11 15 15 N 1.46897 * 109.46776 * 315.02103 * 13 12 11 16 16 C 1.52999 * 109.46980 * 75.02253 * 13 12 11 17 17 C 1.53006 * 109.46626 * 175.00014 * 16 13 12 18 18 C 1.50699 * 109.46866 * 179.97438 * 17 16 13 19 19 H 1.08003 * 119.99963 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00270 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00302 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99832 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47310 * 89.99428 * 22 20 18 24 24 H 1.48491 * 109.47296 * 209.99911 * 22 20 18 25 25 H 1.48502 * 109.46905 * 329.99956 * 22 20 18 26 26 N 1.30981 * 107.12356 * 0.23870 * 12 11 10 27 27 C 1.38006 * 119.94136 * 270.28539 * 4 3 2 28 28 H 1.09000 * 109.47301 * 59.99519 * 1 2 3 29 29 H 1.08998 * 109.46973 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46854 * 299.99664 * 1 2 3 31 31 H 1.09008 * 109.47004 * 60.00377 * 3 2 1 32 32 H 1.09000 * 109.47484 * 300.00610 * 3 2 1 33 33 H 1.08002 * 119.87866 * 0.02562 * 5 4 3 34 34 H 1.08000 * 119.94048 * 180.02562 * 6 5 4 35 35 H 1.07999 * 120.05435 * 179.97438 * 7 6 5 36 36 H 1.00888 * 111.00369 * 60.00291 * 15 13 12 37 37 H 1.00900 * 110.99476 * 183.96192 * 15 13 12 38 38 H 1.08993 * 109.47839 * 55.00083 * 16 13 12 39 39 H 1.09000 * 109.47160 * 294.99645 * 16 13 12 40 40 H 1.09000 * 109.47050 * 299.99699 * 17 16 13 41 41 H 1.09001 * 109.46801 * 59.99811 * 17 16 13 42 42 H 0.97002 * 119.99998 * 179.97438 * 21 20 18 43 43 H 1.08005 * 120.06008 * 359.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.2004 1.1321 -1.1997 6 6 5.5790 1.0224 -1.2076 7 6 6.2762 0.9659 -0.0175 8 6 5.5886 1.0202 1.1929 9 6 6.3329 0.9594 2.4756 10 7 5.8155 0.9995 3.6757 11 8 6.6928 0.9280 4.5103 12 6 7.8852 0.8322 3.9141 13 6 9.2228 0.7242 4.5999 14 1 10.0169 0.9278 3.8814 15 7 9.2915 1.7003 5.6955 16 6 9.3945 -0.6879 5.1632 17 6 10.8001 -0.8356 5.7494 18 6 10.9690 -2.2263 6.3048 19 1 10.1551 -2.9338 6.2461 20 6 12.1626 -2.5954 6.8880 21 7 12.3098 -3.8089 7.3732 22 14 13.5701 -1.3715 6.9903 23 1 13.4712 -0.6084 8.2605 24 1 14.8634 -2.0999 6.9498 25 1 13.4943 -0.4330 5.8419 26 7 7.6731 0.8557 2.6217 27 6 4.1993 1.1259 1.1949 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6887 1.8464 0.8901 32 1 1.6886 1.8465 -0.8899 33 1 3.6588 1.1756 -2.1331 34 1 6.1110 0.9808 -2.1465 35 1 7.3527 0.8798 -0.0249 36 1 8.5651 1.5327 6.3752 37 1 10.2021 1.6926 6.1300 38 1 9.2552 -1.4170 4.3651 39 1 8.6549 -0.8595 5.9452 40 1 11.5397 -0.6640 4.9673 41 1 10.9393 -0.1065 6.5475 42 1 13.1497 -4.0687 7.7832 43 1 3.6610 1.1641 2.1305 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822740318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:47 Heat of formation + Delta-G solvation = 15.517853 kcal Electronic energy + Delta-G solvation = -24932.868947 eV Core-core repulsion = 21173.081789 eV Total energy + Delta-G solvation = -3759.787159 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.68260 -40.59976 -38.61469 -38.36901 -36.89928 -35.08493 -33.73350 -33.06419 -32.21520 -31.52812 -28.57386 -28.22947 -26.38396 -25.94133 -25.77458 -24.04522 -22.53502 -22.30150 -21.34371 -19.25633 -19.12019 -18.60664 -17.68546 -17.52956 -17.34212 -16.93800 -16.76394 -16.25952 -15.97269 -15.65964 -15.57756 -15.21716 -14.77658 -14.61222 -14.59513 -14.24539 -14.09446 -13.69687 -13.52403 -13.18971 -13.08424 -12.93300 -12.67641 -12.45450 -12.41574 -12.33163 -11.98679 -11.96783 -11.91485 -11.65288 -11.45299 -11.35213 -10.75447 -10.68909 -10.00723 -9.89351 -9.75065 -8.28042 -6.34247 -0.44543 0.17671 0.23357 1.29876 1.40863 1.43773 1.54662 1.65693 2.26414 2.38585 2.54261 2.76619 3.07680 3.11969 3.55345 3.66244 3.79024 3.87496 3.92377 4.02277 4.10745 4.18650 4.25901 4.33828 4.40200 4.52305 4.55081 4.56808 4.61515 4.66479 4.74652 4.83964 4.86226 4.91293 4.92376 5.30866 5.34719 5.37579 5.42668 5.46469 5.63303 5.80928 5.93152 6.16994 6.25836 6.41678 6.74424 6.96781 7.30474 8.88779 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023270 B = 0.002191 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.989019 B =12776.177038 C =12928.752531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.103 3.897 4 C -0.103 4.103 5 C -0.073 4.073 6 C -0.117 4.117 7 C -0.077 4.077 8 C -0.050 4.050 9 C 0.205 3.795 10 N -0.397 5.397 11 O 0.078 5.922 12 C 0.215 3.785 13 C 0.194 3.806 14 H 0.135 0.865 15 N -0.833 5.833 16 C -0.126 4.126 17 C -0.005 4.005 18 C -0.536 4.536 19 H 0.024 0.976 20 C 0.000 4.000 21 N -0.954 5.954 22 Si 0.955 3.045 23 H -0.262 1.262 24 H -0.292 1.292 25 H -0.235 1.235 26 N -0.490 5.490 27 C -0.075 4.075 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.161 0.839 34 H 0.165 0.835 35 H 0.136 0.864 36 H 0.353 0.647 37 H 0.369 0.631 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.031 0.969 41 H 0.038 0.962 42 H 0.266 0.734 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.967 16.042 -18.068 30.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.027 3.973 4 C -0.103 4.103 5 C -0.091 4.091 6 C -0.135 4.135 7 C -0.097 4.097 8 C -0.051 4.051 9 C -0.064 4.064 10 N -0.106 5.106 11 O 0.021 5.979 12 C -0.006 4.006 13 C 0.080 3.920 14 H 0.153 0.847 15 N -0.367 5.367 16 C -0.166 4.166 17 C -0.042 4.042 18 C -0.574 4.574 19 H 0.043 0.957 20 C -0.197 4.197 21 N -0.594 5.594 22 Si 0.778 3.222 23 H -0.187 1.187 24 H -0.218 1.218 25 H -0.158 1.158 26 N -0.223 5.223 27 C -0.095 4.095 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.179 0.821 34 H 0.183 0.817 35 H 0.154 0.846 36 H 0.167 0.833 37 H 0.187 0.813 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.615 16.405 -18.771 31.721 hybrid contribution 0.767 -1.109 1.489 2.009 sum -18.847 15.295 -17.282 29.797 Atomic orbital electron populations 1.22950 0.79166 1.03795 1.01224 1.87942 1.21656 1.28232 1.95670 1.21428 0.88134 0.85068 1.02689 1.19738 0.95496 1.02333 0.92762 1.21620 0.94421 0.94861 0.98243 1.21479 0.94378 0.99319 0.98306 1.21438 1.01105 0.96109 0.91061 1.17521 0.92515 1.07449 0.87652 1.24337 0.87393 1.00605 0.94102 1.74820 1.13391 1.22533 0.99888 1.85221 1.13438 1.65253 1.34011 1.29058 0.91318 0.92891 0.87319 1.20038 0.85213 0.92054 0.94693 0.84710 1.58950 1.11686 1.50593 1.15478 1.22178 0.99539 0.94733 1.00196 1.19497 0.93184 0.95131 0.96437 1.21415 0.99283 0.98467 1.38204 0.95728 1.26125 1.01979 0.97328 0.94248 1.70090 1.27087 1.21184 1.41085 0.85590 0.77032 0.79113 0.80506 1.18692 1.21797 1.15754 1.71939 1.13492 1.21573 1.15286 1.21068 0.92017 0.97285 0.99100 0.92151 0.88980 0.93319 0.91836 0.89404 0.82132 0.81715 0.84647 0.83308 0.81297 0.92936 0.92058 0.95031 0.94425 0.92551 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.64 10.69 -148.98 -1.59 -9.23 16 3 C 0.10 1.49 6.06 71.24 0.43 1.92 16 4 C -0.10 -1.93 5.51 -19.89 -0.11 -2.04 16 5 C -0.07 -1.07 9.69 22.31 0.22 -0.86 16 6 C -0.12 -1.84 10.03 22.24 0.22 -1.62 16 7 C -0.08 -1.73 9.70 22.48 0.22 -1.51 16 8 C -0.05 -1.35 5.88 -20.04 -0.12 -1.47 16 9 C 0.21 6.66 7.80 137.30 1.07 7.74 16 10 N -0.40 -13.37 11.86 -59.16 -0.70 -14.07 16 11 O 0.08 2.54 11.27 74.65 0.84 3.39 16 12 C 0.22 6.81 7.30 88.36 0.65 7.45 16 13 C 0.19 5.58 3.35 44.17 0.15 5.73 16 14 H 0.14 3.65 8.14 -2.39 -0.02 3.63 16 15 N -0.83 -20.52 9.17 -171.80 -1.58 -22.10 16 16 C -0.13 -4.50 4.78 30.60 0.15 -4.35 16 17 C -0.01 -0.21 3.81 29.85 0.11 -0.09 16 18 C -0.54 -29.68 9.66 25.60 0.25 -29.43 16 19 H 0.02 1.54 7.99 -2.91 -0.02 1.51 16 20 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 21 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 22 Si 0.96 41.63 27.47 68.60 1.88 43.51 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 24 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.23 -9.06 6.54 99.48 0.65 -8.41 16 26 N -0.49 -16.13 11.26 -302.53 -3.41 -19.54 16 27 C -0.07 -1.81 9.34 22.48 0.21 -1.60 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 30 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.06 0.85 8.09 -2.38 -0.02 0.83 16 32 H 0.09 0.78 8.08 -2.39 -0.02 0.76 16 33 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 34 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 35 H 0.14 3.03 7.88 -2.91 -0.02 3.00 16 36 H 0.35 8.22 8.97 -89.70 -0.80 7.41 16 37 H 0.37 8.38 7.55 -89.69 -0.68 7.70 16 38 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.03 1.27 7.20 -2.39 -0.02 1.25 16 41 H 0.04 1.40 6.30 -2.39 -0.02 1.38 16 42 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 43 H 0.12 3.05 7.87 -2.91 -0.02 3.03 16 Total: -1.00 -72.37 369.02 0.41 -71.95 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: -0.49 Total: 23.12 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 5.15 Total: -18.16 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -5.38 Total: -114.58 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.75 Total: -5.85 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 1.88 Total: 43.51 kcal Total: -72.37 0.41 -71.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822740318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.472 kcal (2) G-P(sol) polarization free energy of solvation -72.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds